Literature DB >> 25995955

Crystal structure of (E)-3-(3,4-di-meth-oxy-phen-yl)-1-(1-hy-droxy-naphthalen-2-yl)prop-2-en-1-one.

K S Ezhilarasi1, D Reuben Jonathan2, R Vasanthi1, B K Revathi1, G Usha1.   

Abstract

The mol-ecular structure of the title compound, C21H18O4, consists of a 3,4-di-meth-oxy-phenyl ring and a naphthalene ring system linked via a prop-2-en-1-one spacer. The mol-ecule is almost planar, with a dihedral angle between the benzene ring and the naphthalene ring system of 2.68 (12)°. There is an intra-molecular O-H⋯O hydrogen bond involving the adjacent hy-droxy and carbonyl groups. The mol-ecule has an E conformation about the C=C bond and the carbonyl group is syn with respect to the C=C bond. In the crystal, mol-ecules are linked by bifurcated C-H⋯(O,O) hydrogen bonds, enclosing an R 2 (1)(6) ring motif, and by a further C-H⋯O hydrogen bond, forming undulating sheets extending in b- and c-axis directions. There are π-π inter-actions between the sheets, involving inversion-related naphthalene and benzene rings [inter-centroid distance = 3.7452 (17) Å], forming a three-dimensional structure.

Entities:  

Keywords:  1,3-diphenyl-2-propene-1-ones; O—H⋯O intra­molecular hydrogen bond; bifurcated C—H⋯O hydrogen bonds; chalcones; crystal structure; α,β-unsaturated carbonyl system

Year:  2015        PMID: 25995955      PMCID: PMC4420054          DOI: 10.1107/S2056989015008087

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of chalcone derivatives, see: Sashidhara et al. (2011 ▸); Go et al. (2005 ▸); Mukherjee et al. (2001 ▸); Liu et al. (2003 ▸); Sivakumar et al. (2007 ▸); Viana et al. (2003 ▸); Ducki et al. (1998 ▸); Rahman et al. (2007 ▸). For a related structure, see: Ahn et al. (2013 ▸). For the synthesis, see: Ezhilarasi et al. (2014 ▸); Sathya et al. (2014 ▸).

Experimental

Crystal data

C21H18O4 M = 334.35 Monoclinic, a = 9.8784 (10) Å b = 15.4108 (15) Å c = 11.2288 (11) Å β = 92.674 (2)° V = 1707.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.973, T max = 0.982 34671 measured reflections 3568 independent reflections 1992 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.247 S = 1.08 3568 reflections 230 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, Global. DOI: 10.1107/S2056989015008087/su5109sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008087/su5109Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008087/su5109Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015008087/su5109fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. c . DOI: 10.1107/S2056989015008087/su5109fig2.tif A view along the c axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 for details). CCDC reference: 1051679 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H18O4F(000) = 704
Mr = 334.35Dx = 1.301 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.8784 (10) ÅCell parameters from 3582 reflections
b = 15.4108 (15) Åθ = 2.3–26.6°
c = 11.2288 (11) ŵ = 0.09 mm1
β = 92.674 (2)°T = 293 K
V = 1707.5 (3) Å3Block, redish
Z = 40.30 × 0.25 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer3568 independent reflections
Radiation source: fine-focus sealed tube1992 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
ω and φ scanθmax = 26.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −12→12
Tmin = 0.973, Tmax = 0.982k = −19→19
34671 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H-atom parameters constrained
wR(F2) = 0.247w = 1/[σ2(Fo2) + (0.125P)2 + 0.6413P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3568 reflectionsΔρmax = 0.29 e Å3
230 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.212 (16)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O1−0.0402 (2)0.54423 (14)0.26187 (18)0.0626 (6)
O20.1324 (2)0.65677 (13)0.22420 (16)0.0568 (6)
H2A0.08520.61360.21190.085*
O3−0.5102 (2)0.41489 (16)0.74635 (18)0.0691 (7)
O4−0.6337 (2)0.28908 (15)0.63862 (19)0.0664 (7)
C10.1882 (3)0.76195 (17)0.3705 (2)0.0468 (7)
C20.2833 (3)0.8011 (2)0.2974 (3)0.0589 (8)
H20.29720.77840.22220.071*
C30.3548 (3)0.8720 (2)0.3366 (3)0.0702 (10)
H30.41570.89830.28720.084*
C40.3372 (4)0.9050 (2)0.4501 (4)0.0757 (10)
H40.38720.95300.47620.091*
C50.2474 (3)0.8680 (2)0.5235 (3)0.0667 (9)
H50.23720.89070.59930.080*
C60.1701 (3)0.79568 (19)0.4855 (3)0.0533 (8)
C70.0772 (3)0.7555 (2)0.5598 (3)0.0599 (8)
H70.06580.77700.63610.072*
C80.0047 (3)0.68597 (19)0.5208 (3)0.0552 (8)
H8−0.05570.66060.57150.066*
C90.0170 (3)0.65037 (17)0.4059 (2)0.0439 (7)
C100.1113 (3)0.68788 (17)0.3329 (2)0.0445 (7)
C11−0.0608 (3)0.57509 (17)0.3629 (2)0.0479 (7)
C12−0.1620 (3)0.53573 (18)0.4362 (3)0.0505 (7)
H12−0.17480.55820.51180.061*
C13−0.2369 (3)0.46840 (19)0.3981 (3)0.0514 (7)
H13−0.22110.44830.32190.062*
C14−0.3399 (3)0.42287 (18)0.4610 (2)0.0484 (7)
C15−0.3725 (3)0.44398 (18)0.5770 (2)0.0482 (7)
H15−0.32680.48910.61650.058*
C16−0.4709 (3)0.39945 (19)0.6339 (2)0.0494 (7)
C17−0.5390 (3)0.33076 (19)0.5753 (3)0.0502 (7)
C18−0.5085 (3)0.30938 (19)0.4609 (3)0.0549 (8)
H18−0.55430.26440.42130.066*
C19−0.4089 (3)0.35528 (19)0.4049 (3)0.0565 (8)
H19−0.38810.34020.32770.068*
C20−0.4327 (4)0.4750 (3)0.8165 (3)0.0800 (11)
H20A−0.46460.47580.89600.120*
H20B−0.44180.53180.78200.120*
H20C−0.33910.45800.81910.120*
C21−0.6958 (4)0.2140 (2)0.5876 (3)0.0770 (10)
H21A−0.75620.18920.64290.116*
H21B−0.62730.17230.57000.116*
H21C−0.74590.22950.51550.116*
U11U22U33U12U13U23
O10.0739 (15)0.0598 (13)0.0553 (13)−0.0084 (11)0.0161 (10)−0.0062 (10)
O20.0683 (14)0.0591 (13)0.0440 (11)−0.0023 (10)0.0119 (10)0.0030 (9)
O30.0801 (15)0.0796 (16)0.0486 (13)−0.0189 (12)0.0110 (11)−0.0048 (10)
O40.0678 (14)0.0696 (15)0.0620 (13)−0.0185 (11)0.0060 (11)0.0058 (11)
C10.0443 (15)0.0449 (15)0.0511 (16)0.0067 (12)−0.0003 (12)0.0070 (12)
C20.0584 (19)0.0583 (18)0.0597 (18)−0.0032 (15)0.0013 (15)0.0102 (14)
C30.064 (2)0.065 (2)0.081 (2)−0.0109 (17)0.0006 (18)0.0163 (18)
C40.067 (2)0.058 (2)0.101 (3)−0.0055 (17)−0.016 (2)−0.0005 (19)
C50.065 (2)0.058 (2)0.076 (2)0.0049 (16)−0.0085 (17)−0.0108 (16)
C60.0528 (17)0.0486 (16)0.0580 (17)0.0084 (13)−0.0023 (14)−0.0008 (13)
C70.0643 (19)0.065 (2)0.0507 (17)0.0067 (16)0.0061 (14)−0.0116 (15)
C80.0566 (18)0.0566 (18)0.0536 (17)0.0026 (14)0.0134 (14)0.0002 (14)
C90.0465 (15)0.0433 (15)0.0424 (14)0.0090 (11)0.0068 (12)0.0019 (11)
C100.0476 (16)0.0442 (15)0.0417 (15)0.0094 (12)0.0031 (12)0.0041 (11)
C110.0500 (16)0.0440 (15)0.0499 (16)0.0081 (12)0.0056 (12)0.0051 (12)
C120.0536 (17)0.0500 (16)0.0485 (16)0.0039 (13)0.0094 (13)0.0060 (12)
C130.0510 (17)0.0515 (17)0.0519 (16)0.0057 (13)0.0053 (13)0.0049 (13)
C140.0455 (15)0.0469 (16)0.0529 (17)0.0042 (12)0.0027 (12)0.0064 (12)
C150.0475 (16)0.0463 (15)0.0506 (16)0.0017 (12)0.0001 (12)0.0034 (12)
C160.0506 (16)0.0539 (17)0.0435 (15)0.0011 (13)−0.0004 (12)0.0036 (12)
C170.0481 (16)0.0517 (16)0.0507 (17)0.0012 (13)0.0007 (13)0.0094 (13)
C180.0562 (18)0.0526 (17)0.0554 (18)−0.0042 (14)−0.0023 (14)−0.0007 (13)
C190.0605 (18)0.0581 (18)0.0512 (17)0.0002 (14)0.0064 (14)−0.0053 (14)
C200.093 (3)0.092 (3)0.056 (2)−0.018 (2)0.0084 (18)−0.0162 (18)
C210.069 (2)0.073 (2)0.089 (3)−0.0219 (18)0.0025 (19)0.0060 (19)
O1—C111.255 (3)C9—C101.395 (4)
O2—C101.336 (3)C9—C111.462 (4)
O2—H2A0.8200C11—C121.457 (4)
O3—C161.359 (3)C12—C131.333 (4)
O3—C201.417 (4)C12—H120.9300
O4—C171.361 (3)C13—C141.446 (4)
O4—C211.418 (4)C13—H130.9300
C1—C61.411 (4)C14—C191.381 (4)
C1—C21.411 (4)C14—C151.395 (4)
C1—C101.425 (4)C15—C161.372 (4)
C2—C31.363 (5)C15—H150.9300
C2—H20.9300C16—C171.402 (4)
C3—C41.391 (5)C17—C181.374 (4)
C3—H30.9300C18—C191.385 (4)
C4—C51.365 (5)C18—H180.9300
C4—H40.9300C19—H190.9300
C5—C61.406 (4)C20—H20A0.9600
C5—H50.9300C20—H20B0.9600
C6—C71.412 (4)C20—H20C0.9600
C7—C81.350 (4)C21—H21A0.9600
C7—H70.9300C21—H21B0.9600
C8—C91.412 (4)C21—H21C0.9600
C8—H80.9300
C10—O2—H2A109.5C13—C12—C11121.8 (3)
C16—O3—C20117.4 (2)C13—C12—H12119.1
C17—O4—C21118.0 (2)C11—C12—H12119.1
C6—C1—C2119.4 (3)C12—C13—C14127.8 (3)
C6—C1—C10118.6 (2)C12—C13—H13116.1
C2—C1—C10122.0 (3)C14—C13—H13116.1
C3—C2—C1120.2 (3)C19—C14—C15118.1 (3)
C3—C2—H2119.9C19—C14—C13119.2 (3)
C1—C2—H2119.9C15—C14—C13122.8 (3)
C2—C3—C4120.3 (3)C16—C15—C14121.2 (3)
C2—C3—H3119.9C16—C15—H15119.4
C4—C3—H3119.9C14—C15—H15119.4
C5—C4—C3120.9 (3)O3—C16—C15125.8 (3)
C5—C4—H4119.6O3—C16—C17114.6 (2)
C3—C4—H4119.6C15—C16—C17119.6 (3)
C4—C5—C6120.5 (3)O4—C17—C18124.1 (3)
C4—C5—H5119.8O4—C17—C16116.0 (3)
C6—C5—H5119.8C18—C17—C16119.9 (3)
C5—C6—C1118.7 (3)C17—C18—C19119.6 (3)
C5—C6—C7121.8 (3)C17—C18—H18120.2
C1—C6—C7119.5 (3)C19—C18—H18120.2
C8—C7—C6120.4 (3)C14—C19—C18121.6 (3)
C8—C7—H7119.8C14—C19—H19119.2
C6—C7—H7119.8C18—C19—H19119.2
C7—C8—C9122.5 (3)O3—C20—H20A109.5
C7—C8—H8118.7O3—C20—H20B109.5
C9—C8—H8118.7H20A—C20—H20B109.5
C10—C9—C8117.7 (3)O3—C20—H20C109.5
C10—C9—C11119.3 (2)H20A—C20—H20C109.5
C8—C9—C11122.9 (2)H20B—C20—H20C109.5
O2—C10—C9121.7 (2)O4—C21—H21A109.5
O2—C10—C1117.0 (2)O4—C21—H21B109.5
C9—C10—C1121.3 (2)H21A—C21—H21B109.5
O1—C11—C12119.8 (3)O4—C21—H21C109.5
O1—C11—C9119.6 (2)H21A—C21—H21C109.5
C12—C11—C9120.5 (2)H21B—C21—H21C109.5
C6—C1—C2—C3−1.4 (4)C8—C9—C11—O1−176.6 (3)
C10—C1—C2—C3179.9 (3)C10—C9—C11—C12−178.7 (2)
C1—C2—C3—C41.6 (5)C8—C9—C11—C123.4 (4)
C2—C3—C4—C5−0.7 (5)O1—C11—C12—C13−1.7 (4)
C3—C4—C5—C6−0.4 (5)C9—C11—C12—C13178.3 (2)
C4—C5—C6—C10.5 (4)C11—C12—C13—C14179.7 (3)
C4—C5—C6—C7179.5 (3)C12—C13—C14—C19178.6 (3)
C2—C1—C6—C50.4 (4)C12—C13—C14—C15−1.7 (5)
C10—C1—C6—C5179.1 (3)C19—C14—C15—C16−0.4 (4)
C2—C1—C6—C7−178.6 (3)C13—C14—C15—C16179.9 (2)
C10—C1—C6—C70.1 (4)C20—O3—C16—C15−8.0 (4)
C5—C6—C7—C8−179.8 (3)C20—O3—C16—C17171.3 (3)
C1—C6—C7—C8−0.9 (5)C14—C15—C16—O3−180.0 (3)
C6—C7—C8—C9−0.2 (5)C14—C15—C16—C170.8 (4)
C7—C8—C9—C102.0 (4)C21—O4—C17—C186.1 (4)
C7—C8—C9—C11179.9 (3)C21—O4—C17—C16−174.0 (3)
C8—C9—C10—O2178.1 (2)O3—C16—C17—O4−0.3 (4)
C11—C9—C10—O20.0 (4)C15—C16—C17—O4179.0 (2)
C8—C9—C10—C1−2.7 (4)O3—C16—C17—C18179.6 (3)
C11—C9—C10—C1179.2 (2)C15—C16—C17—C18−1.0 (4)
C6—C1—C10—O2−179.0 (2)O4—C17—C18—C19−179.1 (3)
C2—C1—C10—O2−0.3 (4)C16—C17—C18—C190.9 (4)
C6—C1—C10—C91.8 (4)C15—C14—C19—C180.3 (4)
C2—C1—C10—C9−179.6 (2)C13—C14—C19—C18180.0 (3)
C10—C9—C11—O11.3 (4)C17—C18—C19—C14−0.6 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O10.821.752.482 (3)148
C7—H7···O3i0.932.573.368 (4)144
C7—H7···O4i0.932.593.445 (4)152
C18—H18···O2ii0.932.433.333 (4)165
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H2AO10.821.752.482(3)148
C7H7O3i 0.932.573.368(4)144
C7H7O4i 0.932.593.445(4)152
C18H18O2ii 0.932.433.333(4)165

Symmetry codes: (i) ; (ii) .

  12 in total

1.  Synthetic and biological activity evaluation studies on novel 1,3-diarylpropenones.

Authors:  S Mukherjee; V Kumar; A K Prasad; H G Raj; M E Bracke; C E Olsen; S C Jain; V S Parmar
Journal:  Bioorg Med Chem       Date:  2001-02       Impact factor: 3.641

2.  Structure-activity relationships of antileishmanial and antimalarial chalcones.

Authors:  Mei Liu; Prapon Wilairat; Simon L Croft; Agnes Lay-Choo Tan; Mei-Lin Go
Journal:  Bioorg Med Chem       Date:  2003-07-03       Impact factor: 3.641

3.  QSAR studies on chalcones and flavonoids as anti-tuberculosis agents using genetic function approximation (GFA) method.

Authors:  Ponnurengam Malliappan Sivakumar; Sethu Kailasam Geetha Babu; Doble Mukesh
Journal:  Chem Pharm Bull (Tokyo)       Date:  2007-01       Impact factor: 1.645

4.  Synthesis and anti-inflammatory activity of novel biscoumarin-chalcone hybrids.

Authors:  Koneni V Sashidhara; Manoj Kumar; Ram K Modukuri; Ravi Sonkar; Gitika Bhatia; A K Khanna; Shivika Rai; Rakesh Shukla
Journal:  Bioorg Med Chem Lett       Date:  2011-06-12       Impact factor: 2.823

5.  Analgesic and antiinflammatory effects of chalcones isolated from Myracrodruon urundeuva allemão.

Authors:  G S B Viana; M A M Bandeira; F J A Matos
Journal:  Phytomedicine       Date:  2003-03       Impact factor: 5.340

6.  (2E)-1-(3,5-Di-hydroxy-phen-yl)-3-(4-meth-oxy-phen-yl)prop-2-en-1-one.

Authors:  K S Ezhilarasi; D Reuben Jonathan; Shanmugam Sathya; K Prathebha; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-26

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  (E)-1-(3,5-Di-meth-oxy-phen-yl)-3-(3-meth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Seunghyun Ahn; Ha-Jin Lee; Yoongho Lim; Dongsoo Koh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  Crystal structure of 4-[(2E)-3-(4-meth-oxy-phen-yl)prop-2-eno-yl]phenyl benzoate.

Authors:  S Sathya; D Reuben Jonathan; K Prathebha; J Jovita; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-16
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