Literature DB >> 25995912

Crystal structure of febuxostat-acetic acid (1/1).

Min Wu1, Xiu-Rong Hu1, Jian-Ming Gu1, Gu-Ping Tang1.   

Abstract

The asymmetric unit of the title compound [systematic name: 2-(3-cyano-4-iso-butyl-oxyphen-yl)-4-methyl-thia-zole-5-carb-oxy-lic acid-acetic acid (1/1)], C16H16N2O3S·CH3COOH, contains a febuxostat mol-ecule and an acetic acid mol-ecule. In the febuxostat mol-ecule, the thia-zole ring is nearly coplanar with the benzene ring [dihedral angle = 3.24 (2)°]. In the crystal, the febuxostat and acetic acid mol-ecules are linked by O-H⋯O, O-H⋯N hydrogen bonds and weak C-H⋯O hydrogen bonds, forming supra-molecular chains propagating along the b-axis direction. π-π stacking is observed between nearly parallel thia-zole and benzene rings of adjacent mol-ecules; the centroid-to-centroid distances are 3.8064 (17) and 3.9296 (17) Å.

Entities:  

Keywords:  acetic acid; co-crystal; crystal structure; febuxostat; hydrogen bonding; π–π stacking

Year:  2015        PMID: 25995912      PMCID: PMC4420075          DOI: 10.1107/S2056989015005708

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general apllications of febuxostat in medicine, see: Pascual et al. (2009 ▸); Kataoka et al. (2015 ▸); Gray & Walters-Smith (2011 ▸). For the synthesis, polymorphism, stability and bioavailabitily of febuxostat, see: Hiramatsu et al. (2000 ▸); Maddileti et al. (2013 ▸). For the crystal structures of febuxostat pyridine solvate and febuxostat methanol solvate, see: Zhu et al. (2009 ▸); Jiang et al. (2011 ▸).

Experimental

Crystal data

C16H16N2O3S·C2H4O2 M = 376.42 Triclinic, a = 7.684 (2) Å b = 10.580 (3) Å c = 12.059 (3) Å α = 84.897 (5)° β = 84.674 (4)° γ = 71.081 (5)° V = 921.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.51 × 0.30 × 0.24 mm

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▸) T min = 0.890, T max = 0.952 7415 measured reflections 3397 independent reflections 2749 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.123 S = 1.00 3397 reflections 241 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.26 e Å−3

Data collection: PROCESS-AUTO (Rigaku, 2006 ▸); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015005708/xu5836sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015005708/xu5836Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015005708/xu5836Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015005708/xu5836fig1.tif Mol­ecular structure of the title compound (I) showing atom-labelling scheme. Click here for additional data file. . DOI: 10.1107/S2056989015005708/xu5836fig2.tif Part of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity. CCDC reference: 1055245 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H16N2O3S·C2H4O2Z = 2
Mr = 376.42F(000) = 396
Triclinic, P1Dx = 1.356 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.684 (2) ÅCell parameters from 2789 reflections
b = 10.580 (3) Åθ = 3.2–27.4°
c = 12.059 (3) ŵ = 0.21 mm1
α = 84.897 (5)°T = 296 K
β = 84.674 (4)°Chunk, colorless
γ = 71.081 (5)°0.51 × 0.30 × 0.24 mm
V = 921.6 (4) Å3
Rigaku R-AXIS RAPID/ZJUG diffractometer3397 independent reflections
Radiation source: rolling anode2749 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 10.00 pixels mm-1θmax = 25.5°, θmin = 3.2°
ω scansh = −8→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −12→12
Tmin = 0.890, Tmax = 0.952l = −14→14
7415 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0641P)2 + 0.4268P] where P = (Fo2 + 2Fc2)/3
3397 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.72628 (8)0.73569 (5)0.50085 (4)0.03662 (17)
O10.5945 (3)1.02293 (15)0.26948 (14)0.0507 (4)
H10.58891.10160.27050.076*
O20.7074 (3)1.00765 (16)0.43526 (15)0.0584 (5)
O30.8936 (2)0.12754 (14)0.74240 (13)0.0435 (4)
O40.5922 (3)0.46989 (15)0.17802 (14)0.0538 (5)
H40.62210.48210.23870.081*
O50.5837 (3)0.28003 (15)0.26573 (13)0.0511 (4)
N10.6762 (2)0.60007 (15)0.34796 (13)0.0305 (4)
N20.9313 (4)0.3647 (3)0.90533 (19)0.0707 (7)
C30.6693 (3)0.81547 (19)0.37300 (17)0.0324 (5)
C20.6483 (3)0.72860 (18)0.30167 (17)0.0304 (4)
C10.7188 (3)0.59016 (18)0.45268 (16)0.0291 (4)
C40.6599 (3)0.9576 (2)0.36255 (18)0.0364 (5)
C50.6022 (3)0.7595 (2)0.18262 (18)0.0416 (5)
H5A0.48350.75080.17470.062*
H5B0.69380.69810.13650.062*
H5C0.59970.84930.16010.062*
C60.7591 (3)0.46731 (19)0.52647 (16)0.0299 (4)
C110.7480 (3)0.3481 (2)0.49263 (17)0.0333 (5)
H110.71060.34640.42180.040*
C100.7910 (3)0.2323 (2)0.56132 (18)0.0361 (5)
H100.78360.15370.53630.043*
C90.8457 (3)0.2333 (2)0.66802 (17)0.0332 (5)
C80.8528 (3)0.3538 (2)0.70422 (17)0.0332 (5)
C70.8122 (3)0.4681 (2)0.63359 (17)0.0337 (5)
H70.82050.54680.65800.040*
C130.8752 (3)0.0017 (2)0.71520 (19)0.0412 (5)
H13A0.9542−0.03120.64950.049*
H13B0.74870.01390.70030.049*
C140.9314 (3)−0.0965 (2)0.8147 (2)0.0450 (6)
H141.0592−0.10620.82770.054*
C150.8132 (4)−0.0512 (3)0.9196 (2)0.0650 (8)
H15A0.81970.03420.93620.098*
H15B0.8569−0.11540.98040.098*
H15C0.6878−0.04340.90910.098*
C160.9239 (4)−0.2326 (2)0.7854 (3)0.0605 (7)
H16A0.8005−0.22420.76920.091*
H16B0.9601−0.29660.84740.091*
H16C1.0064−0.26220.72120.091*
C120.8996 (3)0.3588 (2)0.81619 (19)0.0440 (5)
C170.5719 (3)0.3514 (2)0.18152 (18)0.0371 (5)
C180.5320 (5)0.3165 (3)0.0724 (2)0.0676 (8)
H18A0.53750.22430.07690.101*
H18B0.62170.33050.01590.101*
H18C0.41110.37220.05380.101*
U11U22U33U12U13U23
S10.0516 (3)0.0284 (3)0.0330 (3)−0.0157 (2)−0.0089 (2)−0.0002 (2)
O10.0769 (12)0.0284 (8)0.0533 (10)−0.0232 (8)−0.0232 (9)0.0079 (7)
O20.0934 (14)0.0360 (9)0.0574 (11)−0.0312 (9)−0.0266 (10)−0.0004 (8)
O30.0615 (10)0.0317 (8)0.0401 (9)−0.0190 (7)−0.0145 (7)0.0104 (6)
O40.0965 (14)0.0329 (8)0.0406 (9)−0.0315 (9)−0.0159 (9)0.0059 (7)
O50.0845 (13)0.0324 (8)0.0425 (9)−0.0267 (8)−0.0148 (8)0.0068 (7)
N10.0390 (9)0.0238 (8)0.0294 (9)−0.0111 (7)−0.0063 (7)0.0025 (6)
N20.0975 (19)0.0752 (16)0.0407 (13)−0.0255 (15)−0.0214 (12)−0.0011 (11)
C30.0372 (11)0.0281 (10)0.0332 (11)−0.0122 (8)−0.0059 (9)0.0028 (8)
C20.0341 (10)0.0246 (9)0.0332 (11)−0.0110 (8)−0.0032 (8)0.0018 (8)
C10.0295 (10)0.0254 (9)0.0320 (10)−0.0089 (8)−0.0008 (8)−0.0012 (8)
C40.0422 (12)0.0291 (10)0.0406 (12)−0.0153 (9)−0.0052 (9)0.0013 (9)
C50.0627 (14)0.0295 (10)0.0352 (12)−0.0177 (10)−0.0129 (10)0.0063 (9)
C60.0314 (10)0.0274 (10)0.0302 (10)−0.0090 (8)−0.0017 (8)0.0008 (8)
C110.0388 (11)0.0327 (10)0.0304 (10)−0.0141 (9)−0.0061 (9)0.0023 (8)
C100.0462 (12)0.0292 (10)0.0364 (11)−0.0161 (9)−0.0074 (9)0.0009 (9)
C90.0367 (11)0.0303 (10)0.0337 (11)−0.0136 (9)−0.0042 (9)0.0057 (8)
C80.0375 (11)0.0329 (10)0.0286 (10)−0.0104 (9)−0.0039 (8)0.0009 (8)
C70.0404 (11)0.0279 (10)0.0338 (11)−0.0120 (9)−0.0031 (9)−0.0017 (8)
C130.0506 (13)0.0313 (11)0.0437 (13)−0.0173 (10)−0.0039 (10)0.0049 (9)
C140.0450 (12)0.0355 (11)0.0528 (14)−0.0126 (10)−0.0094 (11)0.0110 (10)
C150.088 (2)0.0519 (15)0.0481 (15)−0.0164 (15)−0.0039 (14)0.0141 (12)
C160.0697 (17)0.0333 (12)0.0743 (19)−0.0146 (12)−0.0043 (15)0.0111 (12)
C120.0577 (14)0.0389 (12)0.0357 (13)−0.0157 (11)−0.0094 (10)0.0032 (9)
C170.0473 (12)0.0272 (10)0.0388 (12)−0.0148 (9)−0.0030 (9)−0.0010 (9)
C180.119 (3)0.0564 (16)0.0429 (15)−0.0473 (17)−0.0126 (15)−0.0017 (12)
S1—C31.713 (2)C11—H110.9300
S1—C11.713 (2)C10—C91.392 (3)
O1—C41.316 (3)C10—H100.9300
O1—H10.8200C9—C81.403 (3)
O2—C41.204 (3)C8—C71.381 (3)
O3—C91.344 (2)C8—C121.439 (3)
O3—C131.452 (3)C7—H70.9300
O4—C171.309 (3)C13—C141.512 (3)
O4—H40.8200C13—H13A0.9700
O5—C171.203 (3)C13—H13B0.9700
N1—C11.321 (3)C14—C151.506 (4)
N1—C21.380 (2)C14—C161.533 (3)
N2—C121.135 (3)C14—H140.9800
C3—C21.369 (3)C15—H15A0.9600
C3—C41.477 (3)C15—H15B0.9600
C2—C51.493 (3)C15—H15C0.9600
C1—C61.470 (3)C16—H16A0.9600
C5—H5A0.9600C16—H16B0.9600
C5—H5B0.9600C16—H16C0.9600
C5—H5C0.9600C17—C181.482 (3)
C6—C111.389 (3)C18—H18A0.9600
C6—C71.392 (3)C18—H18B0.9600
C11—C101.380 (3)C18—H18C0.9600
C3—S1—C189.55 (10)C8—C7—C6120.94 (19)
C4—O1—H1109.5C8—C7—H7119.5
C9—O3—C13118.74 (17)C6—C7—H7119.5
C17—O4—H4109.5O3—C13—C14107.20 (18)
C1—N1—C2110.89 (16)O3—C13—H13A110.3
C2—C3—C4134.5 (2)C14—C13—H13A110.3
C2—C3—S1110.65 (15)O3—C13—H13B110.3
C4—C3—S1114.82 (15)C14—C13—H13B110.3
C3—C2—N1114.23 (18)H13A—C13—H13B108.5
C3—C2—C5126.75 (18)C15—C14—C13112.9 (2)
N1—C2—C5119.01 (17)C15—C14—C16110.9 (2)
N1—C1—C6125.29 (17)C13—C14—C16108.2 (2)
N1—C1—S1114.68 (14)C15—C14—H14108.2
C6—C1—S1120.03 (15)C13—C14—H14108.2
O2—C4—O1123.93 (19)C16—C14—H14108.2
O2—C4—C3121.4 (2)C14—C15—H15A109.5
O1—C4—C3114.69 (18)C14—C15—H15B109.5
C2—C5—H5A109.5H15A—C15—H15B109.5
C2—C5—H5B109.5C14—C15—H15C109.5
H5A—C5—H5B109.5H15A—C15—H15C109.5
C2—C5—H5C109.5H15B—C15—H15C109.5
H5A—C5—H5C109.5C14—C16—H16A109.5
H5B—C5—H5C109.5C14—C16—H16B109.5
C11—C6—C7118.10 (18)H16A—C16—H16B109.5
C11—C6—C1122.16 (18)C14—C16—H16C109.5
C7—C6—C1119.74 (18)H16A—C16—H16C109.5
C10—C11—C6121.79 (19)H16B—C16—H16C109.5
C10—C11—H11119.1N2—C12—C8178.0 (3)
C6—C11—H11119.1O5—C17—O4122.5 (2)
C11—C10—C9119.94 (19)O5—C17—C18124.4 (2)
C11—C10—H10120.0O4—C17—C18113.11 (19)
C9—C10—H10120.0C17—C18—H18A109.5
O3—C9—C10125.95 (18)C17—C18—H18B109.5
O3—C9—C8115.24 (18)H18A—C18—H18B109.5
C10—C9—C8118.81 (18)C17—C18—H18C109.5
C7—C8—C9120.38 (19)H18A—C18—H18C109.5
C7—C8—C12119.81 (19)H18B—C18—H18C109.5
C9—C8—C12119.80 (18)
C1—S1—C3—C2−0.09 (16)S1—C1—C6—C7−3.2 (3)
C1—S1—C3—C4−178.19 (16)C7—C6—C11—C10−1.1 (3)
C4—C3—C2—N1177.9 (2)C1—C6—C11—C10178.15 (18)
S1—C3—C2—N10.3 (2)C6—C11—C10—C90.6 (3)
C4—C3—C2—C5−1.3 (4)C13—O3—C9—C10−5.0 (3)
S1—C3—C2—C5−178.87 (18)C13—O3—C9—C8174.90 (18)
C1—N1—C2—C3−0.4 (2)C11—C10—C9—O3−179.0 (2)
C1—N1—C2—C5178.84 (18)C11—C10—C9—C81.1 (3)
C2—N1—C1—C6−179.40 (18)O3—C9—C8—C7177.91 (18)
C2—N1—C1—S10.3 (2)C10—C9—C8—C7−2.2 (3)
C3—S1—C1—N1−0.13 (16)O3—C9—C8—C12−3.1 (3)
C3—S1—C1—C6179.60 (16)C10—C9—C8—C12176.8 (2)
C2—C3—C4—O2−170.3 (2)C9—C8—C7—C61.6 (3)
S1—C3—C4—O27.2 (3)C12—C8—C7—C6−177.3 (2)
C2—C3—C4—O110.4 (4)C11—C6—C7—C80.0 (3)
S1—C3—C4—O1−172.07 (16)C1—C6—C7—C8−179.29 (18)
N1—C1—C6—C11−2.8 (3)C9—O3—C13—C14−177.85 (18)
S1—C1—C6—C11177.53 (15)O3—C13—C14—C1560.1 (3)
N1—C1—C6—C7176.48 (19)O3—C13—C14—C16−176.75 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O5i0.821.872.691 (2)177
O4—H4···N10.822.052.800 (3)152
C10—H10···O2ii0.932.303.192 (3)162
C11—H11···O50.932.453.344 (3)161
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1O5i 0.821.872.691(2)177
O4H4N10.822.052.800(3)152
C10H10O2ii 0.932.303.192(3)162
C11H11O50.932.453.344(3)161

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Febuxostat.

Authors:  Eliseo Pascual; Francisca Sivera; Uma Yasothan; Peter Kirkpatrick
Journal:  Nat Rev Drug Discov       Date:  2009-03       Impact factor: 84.694

3.  The xanthine oxidase inhibitor Febuxostat reduces tissue uric acid content and inhibits injury-induced inflammation in the liver and lung.

Authors:  Hiroshi Kataoka; Ke Yang; Kenneth L Rock
Journal:  Eur J Pharmacol       Date:  2014-11-20       Impact factor: 4.432

Review 4.  Febuxostat for treatment of chronic gout.

Authors:  Charnelda L Gray; Nafesa E Walters-Smith
Journal:  Am J Health Syst Pharm       Date:  2011-03-01       Impact factor: 2.637

5.  2-[3-Cyano-4-(2-methyl-prop-oxy)phen-yl]-4-methyl-thia-zole-5-carboxylic acid pyridine solvate.

Authors:  Xiong Zhu; Yue Wang; Tao Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

6.  Febuxostat methanol solvate.

Authors:  Qi-Ying Jiang; Jing-Jing Qian; Jian-Ming Gu; Gu-Ping Tang; Xiu-Rong Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29
  6 in total

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