Literature DB >> 21578222

2-[3-Cyano-4-(2-methyl-prop-oxy)phen-yl]-4-methyl-thia-zole-5-carboxylic acid pyridine solvate.

Xiong Zhu, Yue Wang, Tao Lu.   

Abstract

In the title compound, C(16)H(16)N(2)O(3)S·C(5)H(5)N, the benzene and thia-zole rings of the Febuxostat [2-(3-cyano-4-isobut-yloxy)phenyl-4-methyl-5-thia-zolecarboxylic acid] mol-ecule are almost coplanar [dihedral angle = 2.4 (1)°]. The carboxyl group is coplanar with the thia-zole ring [O-C-C-C and O-C-C-S torsion angles of -0.7 (4) and 0.6 (3)°, respectively]. The pyridine mol-ecule of crystallization is linked to the Febuxostat mol-ecule through an O-H⋯N hydrogen bond. A weak π-π stacking inter-action is observed between the benzene ring of the Febuxostat mol-ecule and pyridine mol-ecule, with a centroid-centroid distance of 3.7530 (18) Å.

Entities:  

Year:  2009        PMID: 21578222      PMCID: PMC2971045          DOI: 10.1107/S1600536809039002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to gout, see: Alexander (2008 ▶). For the synthesis, polymorphism, stability and biological activity of Febuxostat, see: Edwards (2009 ▶); Hiramatsu et al. (2000 ▶); Perez-Ruiz et al. (2008 ▶); Sorbera et al. (2001 ▶); Zhou et al. (2007 ▶). For a related structure, see: Fontrodona et al. (2001 ▶).

Experimental

Crystal data

C16H16N2O3S·C5H5N M = 395.47 Triclinic, a = 8.6040 (17) Å b = 10.339 (2) Å c = 12.611 (3) Å α = 82.51 (3)° β = 80.69 (3)° γ = 69.61 (3)° V = 1034.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 296 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.947, T max = 0.964 4017 measured reflections 3747 independent reflections 2815 reflections with I > 2σ(I) R int = 0.032 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.156 S = 0.99 3747 reflections 255 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039002/ci2885sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039002/ci2885Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O3S·C5H5NZ = 2
Mr = 395.47F(000) = 416
Triclinic, P1Dx = 1.270 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6040 (17) ÅCell parameters from 25 reflections
b = 10.339 (2) Åθ = 10–13°
c = 12.611 (3) ŵ = 0.18 mm1
α = 82.51 (3)°T = 296 K
β = 80.69 (3)°Block, brown
γ = 69.61 (3)°0.30 × 0.20 × 0.20 mm
V = 1034.4 (4) Å3
Enraf–Nonius CAD-4 diffractometer2815 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
graphiteθmax = 25.3°, θmin = 1.6°
ω/2θ scansh = 0→10
Absorption correction: ψ scan (North et al., 1968)k = −11→12
Tmin = 0.947, Tmax = 0.964l = −14→15
4017 measured reflections3 standard reflections every 200 reflections
3747 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.156w = 1/[σ2(Fo2) + (0.1P)2 + 0.12P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
3747 reflectionsΔρmax = 0.33 e Å3
255 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.83182 (8)0.26459 (7)0.30078 (4)0.0564 (2)
O10.5471 (2)0.2112 (2)0.10983 (14)0.0754 (6)
O20.7344 (2)0.3198 (2)0.08925 (14)0.0754 (6)
H2A0.70910.33810.02770.113*
O31.1361 (2)0.20514 (18)0.76698 (12)0.0586 (5)
N10.6870 (3)0.1219 (2)0.43509 (15)0.0586 (5)
N21.2786 (4)0.4042 (4)0.5613 (2)0.1041 (10)
C10.6483 (3)0.2464 (3)0.14487 (19)0.0570 (6)
C20.6882 (3)0.2095 (3)0.25744 (18)0.0523 (6)
C30.7976 (3)0.1847 (2)0.42631 (17)0.0510 (6)
C40.6240 (3)0.1354 (3)0.33987 (18)0.0562 (6)
C50.4943 (4)0.0713 (3)0.3353 (2)0.0790 (9)
H5A0.41670.12820.28740.118*
H5B0.43570.06360.40620.118*
H5C0.5472−0.01910.30960.118*
C60.8868 (3)0.1864 (2)0.51606 (17)0.0509 (6)
C70.9984 (3)0.2585 (3)0.50346 (18)0.0554 (6)
H7A1.01830.30540.43740.067*
C81.0807 (3)0.2614 (2)0.58894 (17)0.0529 (6)
C91.0521 (3)0.1928 (2)0.68921 (17)0.0494 (5)
C100.9425 (3)0.1192 (2)0.70122 (17)0.0539 (6)
H10A0.92300.07140.76690.065*
C110.8622 (3)0.1166 (3)0.61544 (18)0.0555 (6)
H11A0.78920.06640.62470.067*
C121.1917 (4)0.3398 (3)0.57499 (19)0.0705 (8)
C131.1139 (3)0.1363 (3)0.87244 (17)0.0532 (6)
H13A1.14890.03710.86770.064*
H13B0.99710.16840.90250.064*
C141.2185 (3)0.1690 (3)0.94322 (18)0.0555 (6)
H14A1.33410.14320.90810.067*
C151.1568 (4)0.3222 (3)0.9600 (2)0.0716 (7)
H15A1.16030.37440.89140.107*
H15B1.22700.34041.00390.107*
H15C1.04400.34870.99520.107*
C161.2148 (4)0.0832 (4)1.0511 (2)0.0829 (9)
H16A1.2555−0.01341.03890.124*
H16B1.10210.10771.08650.124*
H16C1.28440.10121.09560.124*
N30.6706 (3)0.3879 (3)0.89010 (17)0.0662 (6)
C170.5872 (4)0.4524 (3)0.6832 (2)0.0784 (9)
H17A0.55890.47420.61340.094*
C180.6965 (4)0.5024 (3)0.7160 (2)0.0755 (8)
H18A0.74440.55890.66870.091*
C190.7359 (4)0.4686 (3)0.8200 (2)0.0702 (7)
H19A0.81060.50350.84180.084*
C200.5646 (3)0.3398 (3)0.8567 (2)0.0743 (8)
H20A0.51820.28300.90480.089*
C210.5200 (4)0.3700 (4)0.7544 (2)0.0816 (9)
H21A0.44470.33450.73410.098*
U11U22U33U12U13U23
S0.0649 (4)0.0694 (4)0.0399 (3)−0.0261 (3)−0.0190 (3)0.0038 (3)
O10.0859 (13)0.1005 (15)0.0542 (11)−0.0423 (11)−0.0318 (9)0.0028 (10)
O20.0786 (12)0.1131 (16)0.0442 (9)−0.0428 (12)−0.0256 (9)0.0128 (10)
O30.0751 (11)0.0709 (11)0.0383 (8)−0.0323 (9)−0.0229 (7)0.0072 (7)
N10.0607 (12)0.0784 (14)0.0422 (10)−0.0284 (11)−0.0138 (9)−0.0006 (9)
N20.148 (3)0.140 (3)0.0683 (16)−0.102 (2)−0.0507 (17)0.0359 (16)
C10.0562 (14)0.0680 (16)0.0436 (12)−0.0115 (12)−0.0179 (11)−0.0042 (11)
C20.0498 (13)0.0645 (15)0.0428 (12)−0.0140 (11)−0.0157 (10)−0.0078 (10)
C30.0547 (13)0.0588 (14)0.0387 (12)−0.0158 (11)−0.0124 (10)−0.0011 (10)
C40.0553 (14)0.0725 (16)0.0445 (12)−0.0224 (12)−0.0131 (10)−0.0058 (11)
C50.0804 (19)0.113 (2)0.0605 (16)−0.0508 (18)−0.0194 (14)−0.0009 (16)
C60.0562 (13)0.0583 (14)0.0383 (11)−0.0164 (11)−0.0130 (10)−0.0027 (10)
C70.0665 (15)0.0631 (15)0.0382 (11)−0.0226 (12)−0.0155 (10)0.0049 (10)
C80.0653 (15)0.0591 (14)0.0391 (12)−0.0249 (12)−0.0163 (10)0.0034 (10)
C90.0599 (13)0.0503 (13)0.0378 (11)−0.0152 (11)−0.0148 (10)−0.0015 (9)
C100.0697 (15)0.0583 (14)0.0362 (11)−0.0240 (12)−0.0147 (10)0.0053 (10)
C110.0658 (15)0.0625 (15)0.0448 (12)−0.0273 (12)−0.0150 (10)−0.0011 (10)
C120.095 (2)0.089 (2)0.0439 (13)−0.0501 (17)−0.0309 (13)0.0172 (13)
C130.0673 (15)0.0578 (14)0.0367 (11)−0.0214 (12)−0.0164 (10)0.0025 (10)
C140.0565 (14)0.0710 (16)0.0400 (12)−0.0198 (12)−0.0142 (10)−0.0021 (11)
C150.0767 (18)0.084 (2)0.0662 (16)−0.0361 (15)−0.0154 (14)−0.0125 (14)
C160.104 (2)0.103 (2)0.0470 (14)−0.0364 (19)−0.0328 (15)0.0091 (14)
N30.0607 (13)0.0864 (16)0.0445 (11)−0.0141 (12)−0.0165 (10)0.0022 (10)
C170.0798 (19)0.094 (2)0.0447 (14)−0.0046 (17)−0.0231 (13)0.0020 (14)
C180.085 (2)0.0775 (19)0.0538 (15)−0.0176 (16)−0.0115 (14)0.0084 (13)
C190.0737 (17)0.0765 (18)0.0588 (16)−0.0207 (15)−0.0166 (13)−0.0022 (13)
C200.0643 (17)0.104 (2)0.0547 (15)−0.0288 (16)−0.0183 (13)0.0081 (14)
C210.0717 (18)0.118 (3)0.0588 (16)−0.0306 (17)−0.0282 (14)0.0032 (16)
S—C21.714 (2)C10—H10A0.93
S—C31.718 (2)C11—H11A0.93
O1—C11.214 (3)C13—C141.508 (3)
O2—C11.304 (3)C13—H13A0.97
O2—H2A0.82C13—H13B0.97
O3—C91.352 (3)C14—C151.516 (4)
O3—C131.442 (3)C14—C161.526 (4)
N1—C31.310 (3)C14—H14A0.98
N1—C41.367 (3)C15—H15A0.96
N2—C121.143 (4)C15—H15B0.96
C1—C21.485 (3)C15—H15C0.96
C2—C41.369 (4)C16—H16A0.96
C3—C61.472 (3)C16—H16B0.96
C4—C51.494 (3)C16—H16C0.96
C5—H5A0.96N3—C201.323 (4)
C5—H5B0.96N3—C191.330 (4)
C5—H5C0.96C17—C181.357 (4)
C6—C111.386 (3)C17—C211.357 (5)
C6—C71.386 (3)C17—H17A0.93
C7—C81.391 (3)C18—C191.377 (4)
C7—H7A0.93C18—H18A0.93
C8—C91.396 (3)C19—H19A0.93
C8—C121.432 (4)C20—C211.371 (4)
C9—C101.384 (3)C20—H20A0.93
C10—C111.382 (3)C21—H21A0.93
C2—S—C389.34 (11)O3—C13—C14107.94 (19)
C1—O2—H2A109.5O3—C13—H13A110.1
C9—O3—C13118.94 (18)C14—C13—H13A110.1
C3—N1—C4111.2 (2)O3—C13—H13B110.1
O1—C1—O2124.6 (2)C14—C13—H13B110.1
O1—C1—C2123.2 (3)H13A—C13—H13B108.4
O2—C1—C2112.2 (2)C13—C14—C15111.3 (2)
C4—C2—C1129.7 (2)C13—C14—C16109.1 (2)
C4—C2—S110.16 (17)C15—C14—C16110.7 (2)
C1—C2—S120.2 (2)C13—C14—H14A108.6
N1—C3—C6123.1 (2)C15—C14—H14A108.6
N1—C3—S114.60 (16)C16—C14—H14A108.6
C6—C3—S122.33 (18)C14—C15—H15A109.5
N1—C4—C2114.7 (2)C14—C15—H15B109.5
N1—C4—C5118.6 (2)H15A—C15—H15B109.5
C2—C4—C5126.7 (2)C14—C15—H15C109.5
C4—C5—H5A109.5H15A—C15—H15C109.5
C4—C5—H5B109.5H15B—C15—H15C109.5
H5A—C5—H5B109.5C14—C16—H16A109.5
C4—C5—H5C109.5C14—C16—H16B109.5
H5A—C5—H5C109.5H16A—C16—H16B109.5
H5B—C5—H5C109.5C14—C16—H16C109.5
C11—C6—C7117.9 (2)H16A—C16—H16C109.5
C11—C6—C3121.4 (2)H16B—C16—H16C109.5
C7—C6—C3120.7 (2)C20—N3—C19117.5 (2)
C6—C7—C8120.5 (2)C18—C17—C21118.6 (3)
C6—C7—H7A119.8C18—C17—H17A120.7
C8—C7—H7A119.8C21—C17—H17A120.7
C7—C8—C9120.9 (2)C17—C18—C19119.4 (3)
C7—C8—C12119.5 (2)C17—C18—H18A120.3
C9—C8—C12119.6 (2)C19—C18—H18A120.3
O3—C9—C10125.7 (2)N3—C19—C18122.2 (3)
O3—C9—C8115.8 (2)N3—C19—H19A118.9
C10—C9—C8118.6 (2)C18—C19—H19A118.9
C11—C10—C9119.9 (2)N3—C20—C21123.0 (3)
C11—C10—H10A120.0N3—C20—H20A118.5
C9—C10—H10A120.0C21—C20—H20A118.5
C10—C11—C6122.2 (2)C17—C21—C20119.2 (3)
C10—C11—H11A118.9C17—C21—H21A120.4
C6—C11—H11A118.9C20—C21—H21A120.4
N2—C12—C8178.1 (3)
O1—C1—C2—C4−0.7 (4)C6—C7—C8—C9−0.4 (4)
O2—C1—C2—C4179.4 (2)C6—C7—C8—C12−178.2 (2)
O1—C1—C2—S−179.5 (2)C13—O3—C9—C100.5 (3)
O2—C1—C2—S0.6 (3)C13—O3—C9—C8−179.5 (2)
C3—S—C2—C40.17 (19)C7—C8—C9—O3−178.6 (2)
C3—S—C2—C1179.2 (2)C12—C8—C9—O3−0.8 (4)
C4—N1—C3—C6−179.6 (2)C7—C8—C9—C101.4 (4)
C4—N1—C3—S0.1 (3)C12—C8—C9—C10179.1 (2)
C2—S—C3—N1−0.1 (2)O3—C9—C10—C11178.9 (2)
C2—S—C3—C6179.5 (2)C8—C9—C10—C11−1.0 (3)
C3—N1—C4—C20.1 (3)C9—C10—C11—C6−0.2 (4)
C3—N1—C4—C5−179.3 (2)C7—C6—C11—C101.1 (4)
C1—C2—C4—N1−179.0 (2)C3—C6—C11—C10−178.8 (2)
S—C2—C4—N1−0.2 (3)C9—O3—C13—C14−179.00 (19)
C1—C2—C4—C50.3 (4)O3—C13—C14—C1564.7 (3)
S—C2—C4—C5179.2 (2)O3—C13—C14—C16−173.0 (2)
N1—C3—C6—C112.2 (4)C21—C17—C18—C19−0.1 (5)
S—C3—C6—C11−177.39 (18)C20—N3—C19—C180.0 (4)
N1—C3—C6—C7−177.7 (2)C17—C18—C19—N30.2 (4)
S—C3—C6—C72.7 (3)C19—N3—C20—C21−0.2 (4)
C11—C6—C7—C8−0.8 (4)C18—C17—C21—C20−0.1 (5)
C3—C6—C7—C8179.1 (2)N3—C20—C21—C170.2 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2A···N3i0.821.792.611 (3)174
C5—H5A···O10.962.523.055 (3)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯N3i0.821.792.611 (3)174

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Febuxostat: a new treatment for hyperuricaemia in gout.

Authors:  N Lawrence Edwards
Journal:  Rheumatology (Oxford)       Date:  2009-05       Impact factor: 7.580

  2 in total
  3 in total

1.  Bioequivalance and pharmacokinetic study of febuxostat in human plasma by using LC-MS/MS with liquid liquid extraction method.

Authors:  Babu Rao Chandu; Kanchanamala Kanala; Nagiat T Hwisa; Prakash Katakam; Mukkanti Khagga
Journal:  Springerplus       Date:  2013-04-30

2.  Febuxostat methanol solvate.

Authors:  Qi-Ying Jiang; Jing-Jing Qian; Jian-Ming Gu; Gu-Ping Tang; Xiu-Rong Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

3.  Crystal structure of febuxostat-acetic acid (1/1).

Authors:  Min Wu; Xiu-Rong Hu; Jian-Ming Gu; Gu-Ping Tang
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-09
  3 in total

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