Literature DB >> 21754528

Febuxostat methanol solvate.

Qi-Ying Jiang, Jing-Jing Qian, Jian-Ming Gu, Gu-Ping Tang, Xiu-Rong Hu.   

Abstract

In the title compound {systematic name: [2-(3-cyano-4-isobutyl-oxyphen-yl)-4-methyl-1,3-thia-zole-5-carb-oxy-lic acid (febuxostat) methanol monosolvate}, C(16)H(16)N(2)O(3)S·CH(4)O, the benzene and thia-zole rings in the febuxostat mol-ecule are twisted at 5.3 (1)°. In the crystal structure, inter-molecular O-H⋯O and O-H⋯N hydrogen bonds link the febuxostat and methanol mol-ecules into helical chains along the 2(1) screw axis.

Entities:  

Year:  2011        PMID: 21754528      PMCID: PMC3089318          DOI: 10.1107/S1600536811014905

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of febuxostat in the medicine, see: Schumacher et al. (2009 ▶); Becke et al. (2010 ▶); Khosravan et al. (2007 ▶); Takano et al. (2005 ▶). For the synthesis, polymorphism, stability and bioavailabitily of febuxostat, see: Hiramatsu et al. (2000 ▶); Sorbera et al. (2001 ▶); Zhou et al. (2007 ▶). For the crystal structure of febuxostat pyridine solvate, see: Zhu et al. (2009 ▶).

Experimental

Crystal data

C16H16N2O3S·CH4O M = 348.41 Monoclinic, a = 4.7089 (3) Å b = 17.9073 (13) Å c = 10.7965 (8) Å β = 98.047 (2)° V = 901.44 (11) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.48 × 0.13 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.905, T max = 0.980 8429 measured reflections 4048 independent reflections 3048 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.078 S = 1.00 4048 reflections 223 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), with 1941 Friedel pairs Flack parameter: −0.05 (7) Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811014905/cv5075sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014905/cv5075Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811014905/cv5075Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O3S·CH4OF(000) = 368
Mr = 348.41Dx = 1.284 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6196 reflections
a = 4.7089 (3) Åθ = 3.8–27.4°
b = 17.9073 (13) ŵ = 0.20 mm1
c = 10.7965 (8) ÅT = 296 K
β = 98.047 (2)°Needle, colourless
V = 901.44 (11) Å30.48 × 0.13 × 0.10 mm
Z = 2
Rigaku R-AXIS RAPID/ZJUG diffractometer4048 independent reflections
Radiation source: rolling anode3048 reflections with I > 2σ(I)
graphiteRint = 0.034
Detector resolution: 10.00 pixels mm-1θmax = 27.4°, θmin = 3.8°
ω scansh = −5→6
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −23→23
Tmin = 0.905, Tmax = 0.980l = −13→13
8429 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.078w = 1/[σ2(Fo2) + (0.0221P)2 + 0.134P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.002
4048 reflectionsΔρmax = 0.13 e Å3
223 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: Flack (1983), with 1941 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.05 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.2078 (5)0.19681 (11)0.8788 (2)0.0794 (6)
H40.22980.15750.91810.119*
C170.0129 (8)0.1856 (2)0.7690 (3)0.0918 (10)
H17A−0.15280.15950.78900.138*
H17B0.10310.15670.71060.138*
H17C−0.04450.23310.73240.138*
S10.81600 (13)0.45188 (3)0.82299 (5)0.04563 (15)
N10.7895 (4)0.56137 (10)0.97388 (17)0.0410 (4)
O31.6085 (4)0.72442 (8)0.62269 (15)0.0491 (4)
C61.0840 (5)0.59027 (12)0.8089 (2)0.0377 (5)
C81.3569 (5)0.61374 (13)0.6395 (2)0.0411 (6)
C10.8996 (5)0.54145 (12)0.8730 (2)0.0403 (5)
C131.6920 (5)0.79823 (12)0.6671 (2)0.0465 (6)
H13A1.81090.79520.74790.056*
H13B1.52320.82760.67640.056*
O10.5033 (5)0.31992 (10)0.87756 (19)0.0708 (6)
H10.41490.28200.89070.106*
C30.6208 (5)0.44077 (13)0.9457 (2)0.0420 (6)
C141.8573 (6)0.83447 (13)0.5728 (2)0.0504 (6)
H142.02170.80260.56250.060*
C20.6304 (5)0.50420 (13)1.0150 (2)0.0416 (5)
C111.1728 (5)0.65996 (13)0.8577 (2)0.0463 (6)
H111.11230.67570.93180.056*
O20.3404 (4)0.35831 (10)1.05077 (18)0.0692 (5)
C91.4399 (5)0.68379 (13)0.6888 (2)0.0406 (5)
C71.1807 (5)0.56763 (12)0.6989 (2)0.0443 (6)
H71.12690.52120.66480.053*
C101.3472 (5)0.70618 (13)0.7997 (2)0.0453 (6)
H101.40290.75230.83460.054*
C40.4753 (5)0.36987 (14)0.9650 (2)0.0480 (6)
C121.4636 (6)0.58932 (14)0.5282 (3)0.0572 (7)
C50.4890 (6)0.51762 (15)1.1292 (2)0.0568 (7)
H5A0.63070.51601.20230.085*
H5B0.34750.47971.13520.085*
H5C0.39820.56571.12330.085*
C161.9705 (7)0.90956 (14)0.6279 (3)0.0750 (9)
H16A2.07980.90150.70870.113*
H16B1.81190.94200.63590.113*
H16C2.09060.93210.57340.113*
N21.5505 (7)0.56898 (16)0.4403 (3)0.0918 (9)
C151.6760 (7)0.8435 (2)0.4470 (3)0.0838 (10)
H15A1.52220.87770.45430.126*
H15B1.59820.79590.41890.126*
H15C1.79220.86260.38790.126*
U11U22U33U12U13U23
O40.1106 (17)0.0497 (12)0.0779 (14)−0.0241 (12)0.0131 (14)0.0098 (11)
C170.102 (3)0.086 (2)0.088 (2)−0.013 (2)0.017 (2)0.012 (2)
S10.0576 (3)0.0349 (3)0.0467 (3)−0.0026 (3)0.0151 (3)−0.0007 (3)
N10.0452 (10)0.0372 (10)0.0415 (10)0.0046 (9)0.0089 (9)0.0009 (8)
O30.0636 (11)0.0400 (9)0.0473 (9)−0.0117 (8)0.0204 (9)−0.0047 (7)
C60.0410 (12)0.0334 (11)0.0389 (12)0.0016 (10)0.0058 (10)0.0038 (10)
C80.0465 (14)0.0380 (12)0.0399 (13)−0.0025 (11)0.0101 (11)−0.0030 (10)
C10.0435 (13)0.0358 (12)0.0407 (12)0.0018 (10)0.0029 (11)0.0024 (10)
C130.0519 (14)0.0375 (12)0.0509 (14)−0.0060 (12)0.0101 (12)−0.0024 (11)
O10.1015 (16)0.0449 (11)0.0727 (13)−0.0199 (10)0.0356 (12)−0.0043 (10)
C30.0475 (13)0.0388 (14)0.0408 (12)0.0016 (11)0.0097 (10)0.0076 (11)
C140.0499 (14)0.0417 (14)0.0627 (16)−0.0004 (11)0.0194 (13)0.0036 (12)
C20.0424 (14)0.0426 (13)0.0402 (13)0.0074 (11)0.0069 (11)0.0075 (10)
C110.0565 (15)0.0422 (14)0.0407 (13)−0.0020 (12)0.0089 (12)−0.0045 (11)
O20.0964 (15)0.0531 (11)0.0647 (12)−0.0073 (10)0.0341 (12)0.0151 (9)
C90.0456 (13)0.0357 (12)0.0408 (13)−0.0004 (10)0.0072 (11)0.0025 (10)
C70.0503 (13)0.0351 (12)0.0473 (13)−0.0029 (11)0.0062 (11)−0.0024 (11)
C100.0595 (16)0.0345 (12)0.0427 (13)−0.0059 (11)0.0105 (12)−0.0027 (10)
C40.0562 (15)0.0423 (13)0.0452 (14)0.0044 (12)0.0057 (13)0.0100 (12)
C120.0730 (18)0.0450 (14)0.0577 (16)−0.0140 (13)0.0229 (14)−0.0090 (13)
C50.0666 (17)0.0557 (16)0.0531 (16)0.0009 (13)0.0252 (14)0.0004 (12)
C160.074 (2)0.0436 (16)0.113 (3)−0.0099 (14)0.0326 (19)−0.0034 (16)
N20.126 (2)0.085 (2)0.0752 (18)−0.0245 (18)0.0498 (18)−0.0323 (16)
C150.100 (3)0.087 (2)0.067 (2)−0.004 (2)0.0197 (19)0.0235 (17)
O4—C171.409 (4)C3—C21.357 (3)
O4—H40.8200C3—C41.471 (3)
C17—H17A0.9600C14—C151.508 (4)
C17—H17B0.9600C14—C161.535 (4)
C17—H17C0.9600C14—H140.9800
S1—C11.720 (2)C2—C51.501 (3)
S1—C31.727 (2)C11—C101.377 (3)
N1—C11.319 (3)C11—H110.9300
N1—C21.378 (3)O2—C41.211 (3)
O3—C91.352 (3)C9—C101.389 (3)
O3—C131.442 (3)C7—H70.9300
C6—C71.390 (3)C10—H100.9300
C6—C111.396 (3)C12—N21.144 (3)
C6—C11.472 (3)C5—H5A0.9600
C8—C71.389 (3)C5—H5B0.9600
C8—C91.397 (3)C5—H5C0.9600
C8—C121.435 (4)C16—H16A0.9600
C13—C141.512 (3)C16—H16B0.9600
C13—H13A0.9700C16—H16C0.9600
C13—H13B0.9700C15—H15A0.9600
O1—C41.321 (3)C15—H15B0.9600
O1—H10.8200C15—H15C0.9600
C17—O4—H4109.5C3—C2—C5127.0 (2)
O4—C17—H17A109.5N1—C2—C5118.0 (2)
O4—C17—H17B109.5C10—C11—C6122.1 (2)
H17A—C17—H17B109.5C10—C11—H11118.9
O4—C17—H17C109.5C6—C11—H11118.9
H17A—C17—H17C109.5O3—C9—C10125.3 (2)
H17B—C17—H17C109.5O3—C9—C8115.8 (2)
C1—S1—C389.40 (12)C10—C9—C8118.8 (2)
C1—N1—C2111.03 (19)C6—C7—C8120.6 (2)
C9—O3—C13118.06 (17)C6—C7—H7119.7
C7—C6—C11117.8 (2)C8—C7—H7119.7
C7—C6—C1120.9 (2)C11—C10—C9119.9 (2)
C11—C6—C1121.3 (2)C11—C10—H10120.1
C7—C8—C9120.8 (2)C9—C10—H10120.1
C7—C8—C12120.5 (2)O2—C4—O1123.1 (2)
C9—C8—C12118.7 (2)O2—C4—C3124.1 (2)
N1—C1—C6123.6 (2)O1—C4—C3112.8 (2)
N1—C1—S1114.35 (17)N2—C12—C8179.0 (3)
C6—C1—S1122.03 (18)C2—C5—H5A109.5
O3—C13—C14108.14 (19)C2—C5—H5B109.5
O3—C13—H13A110.1H5A—C5—H5B109.5
C14—C13—H13A110.1C2—C5—H5C109.5
O3—C13—H13B110.1H5A—C5—H5C109.5
C14—C13—H13B110.1H5B—C5—H5C109.5
H13A—C13—H13B108.4C14—C16—H16A109.5
C4—O1—H1109.5C14—C16—H16B109.5
C2—C3—C4128.6 (2)H16A—C16—H16B109.5
C2—C3—S1110.26 (18)C14—C16—H16C109.5
C4—C3—S1121.10 (18)H16A—C16—H16C109.5
C15—C14—C13111.9 (2)H16B—C16—H16C109.5
C15—C14—C16112.2 (2)C14—C15—H15A109.5
C13—C14—C16107.4 (2)C14—C15—H15B109.5
C15—C14—H14108.4H15A—C15—H15B109.5
C13—C14—H14108.4C14—C15—H15C109.5
C16—C14—H14108.4H15A—C15—H15C109.5
C3—C2—N1115.0 (2)H15B—C15—H15C109.5
C2—N1—C1—C6−178.87 (19)C7—C6—C11—C100.9 (3)
C2—N1—C1—S1−0.2 (2)C1—C6—C11—C10179.5 (2)
C7—C6—C1—N1−176.4 (2)C13—O3—C9—C10−2.4 (3)
C11—C6—C1—N15.0 (3)C13—O3—C9—C8177.84 (19)
C7—C6—C1—S15.0 (3)C7—C8—C9—O3−179.2 (2)
C11—C6—C1—S1−173.57 (17)C12—C8—C9—O32.6 (3)
C3—S1—C1—N10.00 (18)C7—C8—C9—C101.1 (3)
C3—S1—C1—C6178.72 (18)C12—C8—C9—C10−177.2 (2)
C9—O3—C13—C14−175.41 (19)C11—C6—C7—C8−0.8 (3)
C1—S1—C3—C20.17 (18)C1—C6—C7—C8−179.4 (2)
C1—S1—C3—C4−179.20 (18)C9—C8—C7—C6−0.2 (3)
O3—C13—C14—C1562.2 (3)C12—C8—C7—C6178.1 (2)
O3—C13—C14—C16−174.3 (2)C6—C11—C10—C90.1 (4)
C4—C3—C2—N1179.0 (2)O3—C9—C10—C11179.3 (2)
S1—C3—C2—N1−0.3 (2)C8—C9—C10—C11−1.0 (3)
C4—C3—C2—C5−0.8 (4)C2—C3—C4—O2−0.8 (4)
S1—C3—C2—C5179.91 (19)S1—C3—C4—O2178.45 (19)
C1—N1—C2—C30.3 (3)C2—C3—C4—O1178.3 (2)
C1—N1—C2—C5−179.9 (2)S1—C3—C4—O1−2.5 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4···N1i0.822.092.899 (3)169
O1—H1···O40.821.802.608 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯N1i0.822.092.899 (3)169
O1—H1⋯O40.821.802.608 (3)166

Symmetry code: (i) .

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