| Literature DB >> 25995899 |
J Mohana1, M Divya Bharathi1, G Ahila1, G Chakkaravarthi2, G Anbalagan1.
Abstract
In the anion of the title hydrated mol-ecular salt, C9H8N(+)·C8H4NO6 (-)·H2O, the protonated carboxyl and nitro groups makes dihedral angles of 27.56 (5) and 6.86 (8)°, respectively, with the attached benzene ring, whereas the deprotonated carb-oxy group is almost orthogonal to it with a dihedral angle of 80.21 (1)°. In the crystal, the components are linked by O-H⋯O and N-H⋯O hydrogen bonds, generating [001] chains. The packing is consolidated by weak C-H⋯N and C-H⋯O inter-actions as well as aromatic π-π stacking [centroid-to-centroid distances: 3.7023 (8) & 3.6590 (9)Å] inter-actions, resulting in a three-dimensional network.Entities:
Keywords: 2-carboxy-6-nitrobenzoate; crystal structure; hydrogen bonding; molecular salt; quinolinium; π–π stacking interactions
Year: 2015 PMID: 25995899 PMCID: PMC4420104 DOI: 10.1107/S2056989015006052
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C9H8N+·C8H4NO6−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9970 reflections |
| θ = 2.8–30.4° | |
| µ = 0.12 mm−1 | |
| β = 104.434 (2)° | Block, colourless |
| 0.26 × 0.24 × 0.18 mm | |
| Bruker Kappa APEXII CCD diffractometer | 4728 independent reflections |
| Radiation source: fine-focus sealed tube | 3394 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 30.8°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 32650 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4728 reflections | (Δ/σ)max < 0.001 |
| 248 parameters | Δρmax = 0.29 e Å−3 |
| 4 restraints | Δρmin = −0.20 e Å−3 |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.64273 (8) | 0.07483 (8) | −0.05905 (16) | 0.0309 (2) | |
| C2 | 0.57907 (9) | 0.14414 (9) | −0.04652 (19) | 0.0386 (3) | |
| H2 | 0.5629 | 0.1900 | −0.1354 | 0.046* | |
| C3 | 0.54012 (9) | 0.14429 (9) | 0.09892 (19) | 0.0405 (3) | |
| H3 | 0.4982 | 0.1912 | 0.1106 | 0.049* | |
| C4 | 0.56333 (9) | 0.07465 (9) | 0.22753 (18) | 0.0361 (3) | |
| H4 | 0.5351 | 0.0735 | 0.3236 | 0.043* | |
| C5 | 0.62851 (8) | 0.00608 (8) | 0.21529 (16) | 0.0295 (2) | |
| C6 | 0.67125 (8) | 0.00565 (8) | 0.07151 (15) | 0.0276 (2) | |
| C7 | 0.65254 (8) | −0.06752 (8) | 0.35872 (16) | 0.0321 (2) | |
| C8 | 0.74316 (8) | −0.06939 (8) | 0.06354 (16) | 0.0305 (2) | |
| C9 | 0.95815 (10) | 0.39076 (10) | 0.1010 (2) | 0.0450 (3) | |
| H9 | 0.9905 | 0.4451 | 0.1463 | 0.054* | |
| C10 | 0.87001 (11) | 0.39591 (13) | −0.0086 (2) | 0.0563 (4) | |
| H10 | 0.8421 | 0.4543 | −0.0379 | 0.068* | |
| C11 | 0.82119 (11) | 0.31475 (15) | −0.0772 (2) | 0.0617 (5) | |
| H11 | 0.7610 | 0.3196 | −0.1515 | 0.074* | |
| C12 | 0.86022 (10) | 0.22927 (13) | −0.0373 (2) | 0.0552 (4) | |
| H12 | 0.8268 | 0.1759 | −0.0848 | 0.066* | |
| C13 | 0.95129 (9) | 0.22011 (10) | 0.07584 (19) | 0.0387 (3) | |
| C14 | 0.99619 (11) | 0.13384 (10) | 0.1225 (2) | 0.0488 (4) | |
| H14 | 0.9653 | 0.0784 | 0.0797 | 0.059* | |
| C15 | 1.08465 (11) | 0.13063 (10) | 0.2302 (2) | 0.0497 (4) | |
| H15 | 1.1152 | 0.0734 | 0.2584 | 0.060* | |
| C16 | 1.12878 (9) | 0.21365 (10) | 0.2974 (2) | 0.0429 (3) | |
| H16 | 1.1887 | 0.2117 | 0.3734 | 0.051* | |
| C17 | 0.99937 (8) | 0.30253 (9) | 0.14427 (17) | 0.0331 (3) | |
| N1 | 0.67819 (8) | 0.07495 (8) | −0.22213 (15) | 0.0389 (3) | |
| H2A | 1.1177 (11) | 0.3480 (9) | 0.304 (2) | 0.060 (5)* | |
| N2 | 1.08727 (7) | 0.29511 (8) | 0.25544 (16) | 0.0364 (2) | |
| O1 | 0.58421 (7) | −0.08353 (8) | 0.43610 (14) | 0.0457 (2) | |
| H1A | 0.6007 (14) | −0.1247 (11) | 0.516 (2) | 0.069* | |
| O2 | 0.72664 (7) | −0.10794 (7) | 0.39726 (13) | 0.0445 (2) | |
| O3 | 0.82733 (6) | −0.04668 (7) | 0.11938 (14) | 0.0408 (2) | |
| O4 | 0.71315 (7) | −0.14892 (6) | 0.01135 (13) | 0.0386 (2) | |
| O5 | 0.65803 (10) | 0.14023 (9) | −0.32691 (17) | 0.0659 (4) | |
| O6 | 0.72700 (9) | 0.01019 (9) | −0.24593 (16) | 0.0611 (3) | |
| O7 | 0.62094 (7) | −0.21451 (7) | −0.32298 (13) | 0.0420 (2) | |
| H7A | 0.6537 (12) | −0.1934 (13) | −0.2261 (17) | 0.063* | |
| H7B | 0.6482 (12) | −0.2591 (10) | −0.359 (2) | 0.063* |
| C1 | 0.0293 (5) | 0.0308 (6) | 0.0300 (6) | −0.0029 (4) | 0.0026 (4) | 0.0001 (4) |
| C2 | 0.0368 (6) | 0.0332 (6) | 0.0406 (7) | 0.0043 (5) | 0.0001 (5) | 0.0069 (5) |
| C3 | 0.0350 (6) | 0.0363 (7) | 0.0469 (8) | 0.0107 (5) | 0.0042 (5) | −0.0002 (5) |
| C4 | 0.0322 (6) | 0.0386 (6) | 0.0368 (6) | 0.0049 (5) | 0.0073 (5) | −0.0027 (5) |
| C5 | 0.0273 (5) | 0.0287 (5) | 0.0296 (6) | 0.0008 (4) | 0.0014 (4) | −0.0015 (4) |
| C6 | 0.0245 (5) | 0.0256 (5) | 0.0300 (6) | −0.0016 (4) | 0.0017 (4) | −0.0027 (4) |
| C7 | 0.0341 (6) | 0.0325 (6) | 0.0281 (6) | 0.0010 (5) | 0.0047 (5) | −0.0021 (5) |
| C8 | 0.0328 (6) | 0.0293 (5) | 0.0290 (6) | 0.0023 (4) | 0.0068 (4) | −0.0014 (4) |
| C9 | 0.0443 (7) | 0.0386 (7) | 0.0511 (8) | 0.0053 (6) | 0.0100 (6) | 0.0017 (6) |
| C10 | 0.0489 (9) | 0.0593 (10) | 0.0580 (10) | 0.0201 (7) | 0.0085 (7) | 0.0066 (8) |
| C11 | 0.0353 (7) | 0.0846 (13) | 0.0584 (10) | 0.0099 (8) | −0.0011 (7) | −0.0028 (9) |
| C12 | 0.0359 (7) | 0.0647 (10) | 0.0604 (10) | −0.0080 (7) | 0.0031 (7) | −0.0138 (8) |
| C13 | 0.0316 (6) | 0.0414 (7) | 0.0437 (7) | −0.0041 (5) | 0.0105 (5) | −0.0058 (6) |
| C14 | 0.0479 (8) | 0.0350 (7) | 0.0644 (10) | −0.0077 (6) | 0.0157 (7) | −0.0050 (6) |
| C15 | 0.0469 (8) | 0.0350 (7) | 0.0684 (10) | 0.0049 (6) | 0.0166 (7) | 0.0093 (7) |
| C16 | 0.0311 (6) | 0.0444 (7) | 0.0519 (8) | 0.0019 (5) | 0.0080 (6) | 0.0107 (6) |
| C17 | 0.0282 (5) | 0.0364 (6) | 0.0355 (6) | −0.0006 (5) | 0.0094 (5) | 0.0014 (5) |
| N1 | 0.0401 (6) | 0.0412 (6) | 0.0338 (6) | −0.0060 (5) | 0.0061 (5) | 0.0015 (5) |
| N2 | 0.0289 (5) | 0.0362 (5) | 0.0429 (6) | −0.0049 (4) | 0.0068 (4) | 0.0021 (5) |
| O1 | 0.0425 (5) | 0.0521 (6) | 0.0446 (6) | 0.0056 (4) | 0.0148 (4) | 0.0143 (4) |
| O2 | 0.0439 (5) | 0.0486 (6) | 0.0404 (5) | 0.0147 (4) | 0.0095 (4) | 0.0113 (4) |
| O3 | 0.0286 (4) | 0.0385 (5) | 0.0539 (6) | 0.0020 (4) | 0.0078 (4) | −0.0039 (4) |
| O4 | 0.0459 (5) | 0.0293 (4) | 0.0388 (5) | 0.0001 (4) | 0.0071 (4) | −0.0059 (4) |
| O5 | 0.0789 (9) | 0.0694 (8) | 0.0530 (7) | 0.0109 (6) | 0.0232 (6) | 0.0290 (6) |
| O6 | 0.0824 (9) | 0.0594 (7) | 0.0506 (6) | 0.0141 (6) | 0.0338 (6) | 0.0025 (5) |
| O7 | 0.0478 (6) | 0.0417 (5) | 0.0355 (5) | 0.0014 (4) | 0.0086 (4) | 0.0010 (4) |
| C1—C2 | 1.3828 (17) | C10—H10 | 0.9300 |
| C1—C6 | 1.3907 (16) | C11—C12 | 1.349 (3) |
| C1—N1 | 1.4666 (16) | C11—H11 | 0.9300 |
| C2—C3 | 1.372 (2) | C12—C13 | 1.4114 (19) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.3780 (19) | C13—C14 | 1.400 (2) |
| C3—H3 | 0.9300 | C13—C17 | 1.4039 (18) |
| C4—C5 | 1.3906 (16) | C14—C15 | 1.360 (2) |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—C6 | 1.3965 (17) | C15—C16 | 1.386 (2) |
| C5—C7 | 1.4940 (16) | C15—H15 | 0.9300 |
| C6—C8 | 1.5184 (16) | C16—N2 | 1.3141 (17) |
| C7—O2 | 1.2060 (15) | C16—H16 | 0.9300 |
| C7—O1 | 1.3101 (16) | C17—N2 | 1.3663 (16) |
| C8—O4 | 1.2453 (14) | N1—O6 | 1.2120 (16) |
| C8—O3 | 1.2516 (14) | N1—O5 | 1.2146 (15) |
| C9—C10 | 1.362 (2) | N2—H2A | 0.908 (9) |
| C9—C17 | 1.3996 (19) | O1—H1A | 0.840 (9) |
| C9—H9 | 0.9300 | O7—H7A | 0.833 (9) |
| C10—C11 | 1.394 (3) | O7—H7B | 0.836 (9) |
| C2—C1—C6 | 123.08 (12) | C12—C11—C10 | 120.79 (14) |
| C2—C1—N1 | 116.78 (11) | C12—C11—H11 | 119.6 |
| C6—C1—N1 | 120.12 (11) | C10—C11—H11 | 119.6 |
| C3—C2—C1 | 119.09 (12) | C11—C12—C13 | 120.66 (15) |
| C3—C2—H2 | 120.5 | C11—C12—H12 | 119.7 |
| C1—C2—H2 | 120.5 | C13—C12—H12 | 119.7 |
| C2—C3—C4 | 119.75 (12) | C14—C13—C17 | 118.44 (12) |
| C2—C3—H3 | 120.1 | C14—C13—C12 | 123.75 (13) |
| C4—C3—H3 | 120.1 | C17—C13—C12 | 117.82 (13) |
| C3—C4—C5 | 120.73 (12) | C15—C14—C13 | 120.41 (13) |
| C3—C4—H4 | 119.6 | C15—C14—H14 | 119.8 |
| C5—C4—H4 | 119.6 | C13—C14—H14 | 119.8 |
| C4—C5—C6 | 120.78 (11) | C14—C15—C16 | 119.16 (13) |
| C4—C5—C7 | 119.05 (11) | C14—C15—H15 | 120.4 |
| C6—C5—C7 | 120.17 (10) | C16—C15—H15 | 120.4 |
| C1—C6—C5 | 116.47 (10) | N2—C16—C15 | 121.06 (12) |
| C1—C6—C8 | 124.05 (11) | N2—C16—H16 | 119.5 |
| C5—C6—C8 | 119.47 (10) | C15—C16—H16 | 119.5 |
| O2—C7—O1 | 124.07 (12) | N2—C17—C9 | 120.40 (12) |
| O2—C7—C5 | 123.32 (11) | N2—C17—C13 | 118.71 (11) |
| O1—C7—C5 | 112.60 (10) | C9—C17—C13 | 120.89 (12) |
| O4—C8—O3 | 126.02 (11) | O6—N1—O5 | 122.75 (13) |
| O4—C8—C6 | 117.19 (10) | O6—N1—C1 | 118.55 (11) |
| O3—C8—C6 | 116.67 (10) | O5—N1—C1 | 118.69 (12) |
| C10—C9—C17 | 119.08 (14) | C16—N2—C17 | 122.19 (11) |
| C10—C9—H9 | 120.5 | C16—N2—H2A | 118.7 (12) |
| C17—C9—H9 | 120.5 | C17—N2—H2A | 119.1 (12) |
| C9—C10—C11 | 120.77 (15) | C7—O1—H1A | 109.7 (14) |
| C9—C10—H10 | 119.6 | H7A—O7—H7B | 110.4 (18) |
| C11—C10—H10 | 119.6 | ||
| C6—C1—C2—C3 | −1.47 (19) | C17—C9—C10—C11 | −0.1 (3) |
| N1—C1—C2—C3 | 176.70 (11) | C9—C10—C11—C12 | −0.2 (3) |
| C1—C2—C3—C4 | −1.4 (2) | C10—C11—C12—C13 | 0.3 (3) |
| C2—C3—C4—C5 | 2.4 (2) | C11—C12—C13—C14 | −179.82 (16) |
| C3—C4—C5—C6 | −0.64 (18) | C11—C12—C13—C17 | −0.1 (2) |
| C3—C4—C5—C7 | 179.28 (12) | C17—C13—C14—C15 | −0.7 (2) |
| C2—C1—C6—C5 | 3.15 (17) | C12—C13—C14—C15 | 179.01 (16) |
| N1—C1—C6—C5 | −174.97 (10) | C13—C14—C15—C16 | 1.9 (2) |
| C2—C1—C6—C8 | −178.10 (11) | C14—C15—C16—N2 | −1.5 (2) |
| N1—C1—C6—C8 | 3.78 (17) | C10—C9—C17—N2 | −179.26 (14) |
| C4—C5—C6—C1 | −2.06 (16) | C10—C9—C17—C13 | 0.3 (2) |
| C7—C5—C6—C1 | 178.02 (10) | C14—C13—C17—N2 | −0.92 (19) |
| C4—C5—C6—C8 | 179.13 (11) | C12—C13—C17—N2 | 179.37 (13) |
| C7—C5—C6—C8 | −0.78 (16) | C14—C13—C17—C9 | 179.54 (14) |
| C4—C5—C7—O2 | −153.38 (13) | C12—C13—C17—C9 | −0.2 (2) |
| C6—C5—C7—O2 | 26.54 (18) | C2—C1—N1—O6 | −173.03 (12) |
| C4—C5—C7—O1 | 27.15 (16) | C6—C1—N1—O6 | 5.20 (17) |
| C6—C5—C7—O1 | −152.93 (11) | C2—C1—N1—O5 | 7.53 (17) |
| C1—C6—C8—O4 | −100.90 (14) | C6—C1—N1—O5 | −174.24 (12) |
| C5—C6—C8—O4 | 77.82 (14) | C15—C16—N2—C17 | −0.1 (2) |
| C1—C6—C8—O3 | 82.81 (15) | C9—C17—N2—C16 | −179.12 (13) |
| C5—C6—C8—O3 | −98.48 (13) | C13—C17—N2—C16 | 1.3 (2) |
| H··· | ||||
| O7—H7 | 0.83 (1) | 1.92 (1) | 2.7416 (14) | 171 (19) |
| O7—H7 | 0.84 (1) | 2.02 (1) | 2.8459 (14) | 169 (18) |
| O1—H1 | 0.84 (1) | 1.75 (1) | 2.5818 (14) | 173 (2) |
| N2—H2 | 0.91 (1) | 1.74 (1) | 2.6425 (14) | 176 (18) |
| C16—H16···O4iii | 0.93 | 2.49 | 3.1166 (17) | 125 |
| C16—H16···O2iv | 0.93 | 2.39 | 3.1278 (17) | 136 |
| C12—H12···N1 | 0.93 | 2.61 | 3.4866 (19) | 157 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O7H7 | 0.83(1) | 1.92(1) | 2.7416(14) | 171(19) |
| O7H7 | 0.84(1) | 2.02(1) | 2.8459(14) | 169(18) |
| O1H1 | 0.84(1) | 1.75(1) | 2.5818(14) | 173(2) |
| N2H2 | 0.91(1) | 1.74(1) | 2.6425(14) | 176(18) |
| C16H16O4iii | 0.93 | 2.49 | 3.1166(17) | 125 |
| C16H16O2iv | 0.93 | 2.39 | 3.1278(17) | 136 |
| C12H12N1 | 0.93 | 2.61 | 3.4866(19) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .