Literature DB >> 25995899

Crystal structure of quinolinium 2-carboxy-6-nitro-benzoate monohydrate.

J Mohana1, M Divya Bharathi1, G Ahila1, G Chakkaravarthi2, G Anbalagan1.   

Abstract

In the anion of the title hydrated mol-ecular salt, C9H8N(+)·C8H4NO6 (-)·H2O, the protonated carboxyl and nitro groups makes dihedral angles of 27.56 (5) and 6.86 (8)°, respectively, with the attached benzene ring, whereas the deprotonated carb-oxy group is almost orthogonal to it with a dihedral angle of 80.21 (1)°. In the crystal, the components are linked by O-H⋯O and N-H⋯O hydrogen bonds, generating [001] chains. The packing is consolidated by weak C-H⋯N and C-H⋯O inter-actions as well as aromatic π-π stacking [centroid-to-centroid distances: 3.7023 (8) & 3.6590 (9)Å] inter-actions, resulting in a three-dimensional network.

Entities:  

Keywords:  2-carboxy-6-nitro­benzoate; crystal structure; hydrogen bonding; mol­ecular salt; quinolinium; π–π stacking inter­actions

Year:  2015        PMID: 25995899      PMCID: PMC4420104          DOI: 10.1107/S2056989015006052

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of quinoline derivatives, see: Font et al. (1997 ▸); Sloboda et al. (1991 ▸). For similar structures, see: Castañeda et al. (2014 ▸); Kafka et al. (2012 ▸); Li & Chai (2007 ▸); Divya Bharathi et al. (2015 ▸).

Experimental

Crystal data

C9H8N+·C8H4NO6 −·H2O M = 358.30 Monoclinic, a = 14.7622 (8) Å b = 14.2461 (8) Å c = 7.6395 (4) Å β = 104.434 (2)° V = 1555.90 (15) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.26 × 0.24 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.969, T max = 0.979 32650 measured reflections 4728 independent reflections 3394 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.115 S = 1.04 4728 reflections 248 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015006052/hb7390sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015006052/hb7390Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015006052/hb7390Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015006052/hb7390fig1.tif The mol­ecular structure of (I), with 30% probability displacement ellipsoids for non-H atoms. Click here for additional data file. . DOI: 10.1107/S2056989015006052/hb7390fig2.tif The packing of (I), viewed down C face. Inter­molecular Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted. CCDC reference: 1015219 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H8N+·C8H4NO6·H2OF(000) = 744
Mr = 358.30Dx = 1.530 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9970 reflections
a = 14.7622 (8) Åθ = 2.8–30.4°
b = 14.2461 (8) ŵ = 0.12 mm1
c = 7.6395 (4) ÅT = 295 K
β = 104.434 (2)°Block, colourless
V = 1555.90 (15) Å30.26 × 0.24 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer4728 independent reflections
Radiation source: fine-focus sealed tube3394 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω and φ scansθmax = 30.8°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −21→21
Tmin = 0.969, Tmax = 0.979k = −20→20
32650 measured reflectionsl = −10→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0472P)2 + 0.4484P] where P = (Fo2 + 2Fc2)/3
4728 reflections(Δ/σ)max < 0.001
248 parametersΔρmax = 0.29 e Å3
4 restraintsΔρmin = −0.20 e Å3
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.64273 (8)0.07483 (8)−0.05905 (16)0.0309 (2)
C20.57907 (9)0.14414 (9)−0.04652 (19)0.0386 (3)
H20.56290.1900−0.13540.046*
C30.54012 (9)0.14429 (9)0.09892 (19)0.0405 (3)
H30.49820.19120.11060.049*
C40.56333 (9)0.07465 (9)0.22753 (18)0.0361 (3)
H40.53510.07350.32360.043*
C50.62851 (8)0.00608 (8)0.21529 (16)0.0295 (2)
C60.67125 (8)0.00565 (8)0.07151 (15)0.0276 (2)
C70.65254 (8)−0.06752 (8)0.35872 (16)0.0321 (2)
C80.74316 (8)−0.06939 (8)0.06354 (16)0.0305 (2)
C90.95815 (10)0.39076 (10)0.1010 (2)0.0450 (3)
H90.99050.44510.14630.054*
C100.87001 (11)0.39591 (13)−0.0086 (2)0.0563 (4)
H100.84210.4543−0.03790.068*
C110.82119 (11)0.31475 (15)−0.0772 (2)0.0617 (5)
H110.76100.3196−0.15150.074*
C120.86022 (10)0.22927 (13)−0.0373 (2)0.0552 (4)
H120.82680.1759−0.08480.066*
C130.95129 (9)0.22011 (10)0.07584 (19)0.0387 (3)
C140.99619 (11)0.13384 (10)0.1225 (2)0.0488 (4)
H140.96530.07840.07970.059*
C151.08465 (11)0.13063 (10)0.2302 (2)0.0497 (4)
H151.11520.07340.25840.060*
C161.12878 (9)0.21365 (10)0.2974 (2)0.0429 (3)
H161.18870.21170.37340.051*
C170.99937 (8)0.30253 (9)0.14427 (17)0.0331 (3)
N10.67819 (8)0.07495 (8)−0.22213 (15)0.0389 (3)
H2A1.1177 (11)0.3480 (9)0.304 (2)0.060 (5)*
N21.08727 (7)0.29511 (8)0.25544 (16)0.0364 (2)
O10.58421 (7)−0.08353 (8)0.43610 (14)0.0457 (2)
H1A0.6007 (14)−0.1247 (11)0.516 (2)0.069*
O20.72664 (7)−0.10794 (7)0.39726 (13)0.0445 (2)
O30.82733 (6)−0.04668 (7)0.11938 (14)0.0408 (2)
O40.71315 (7)−0.14892 (6)0.01135 (13)0.0386 (2)
O50.65803 (10)0.14023 (9)−0.32691 (17)0.0659 (4)
O60.72700 (9)0.01019 (9)−0.24593 (16)0.0611 (3)
O70.62094 (7)−0.21451 (7)−0.32298 (13)0.0420 (2)
H7A0.6537 (12)−0.1934 (13)−0.2261 (17)0.063*
H7B0.6482 (12)−0.2591 (10)−0.359 (2)0.063*
U11U22U33U12U13U23
C10.0293 (5)0.0308 (6)0.0300 (6)−0.0029 (4)0.0026 (4)0.0001 (4)
C20.0368 (6)0.0332 (6)0.0406 (7)0.0043 (5)0.0001 (5)0.0069 (5)
C30.0350 (6)0.0363 (7)0.0469 (8)0.0107 (5)0.0042 (5)−0.0002 (5)
C40.0322 (6)0.0386 (6)0.0368 (6)0.0049 (5)0.0073 (5)−0.0027 (5)
C50.0273 (5)0.0287 (5)0.0296 (6)0.0008 (4)0.0014 (4)−0.0015 (4)
C60.0245 (5)0.0256 (5)0.0300 (6)−0.0016 (4)0.0017 (4)−0.0027 (4)
C70.0341 (6)0.0325 (6)0.0281 (6)0.0010 (5)0.0047 (5)−0.0021 (5)
C80.0328 (6)0.0293 (5)0.0290 (6)0.0023 (4)0.0068 (4)−0.0014 (4)
C90.0443 (7)0.0386 (7)0.0511 (8)0.0053 (6)0.0100 (6)0.0017 (6)
C100.0489 (9)0.0593 (10)0.0580 (10)0.0201 (7)0.0085 (7)0.0066 (8)
C110.0353 (7)0.0846 (13)0.0584 (10)0.0099 (8)−0.0011 (7)−0.0028 (9)
C120.0359 (7)0.0647 (10)0.0604 (10)−0.0080 (7)0.0031 (7)−0.0138 (8)
C130.0316 (6)0.0414 (7)0.0437 (7)−0.0041 (5)0.0105 (5)−0.0058 (6)
C140.0479 (8)0.0350 (7)0.0644 (10)−0.0077 (6)0.0157 (7)−0.0050 (6)
C150.0469 (8)0.0350 (7)0.0684 (10)0.0049 (6)0.0166 (7)0.0093 (7)
C160.0311 (6)0.0444 (7)0.0519 (8)0.0019 (5)0.0080 (6)0.0107 (6)
C170.0282 (5)0.0364 (6)0.0355 (6)−0.0006 (5)0.0094 (5)0.0014 (5)
N10.0401 (6)0.0412 (6)0.0338 (6)−0.0060 (5)0.0061 (5)0.0015 (5)
N20.0289 (5)0.0362 (5)0.0429 (6)−0.0049 (4)0.0068 (4)0.0021 (5)
O10.0425 (5)0.0521 (6)0.0446 (6)0.0056 (4)0.0148 (4)0.0143 (4)
O20.0439 (5)0.0486 (6)0.0404 (5)0.0147 (4)0.0095 (4)0.0113 (4)
O30.0286 (4)0.0385 (5)0.0539 (6)0.0020 (4)0.0078 (4)−0.0039 (4)
O40.0459 (5)0.0293 (4)0.0388 (5)0.0001 (4)0.0071 (4)−0.0059 (4)
O50.0789 (9)0.0694 (8)0.0530 (7)0.0109 (6)0.0232 (6)0.0290 (6)
O60.0824 (9)0.0594 (7)0.0506 (6)0.0141 (6)0.0338 (6)0.0025 (5)
O70.0478 (6)0.0417 (5)0.0355 (5)0.0014 (4)0.0086 (4)0.0010 (4)
C1—C21.3828 (17)C10—H100.9300
C1—C61.3907 (16)C11—C121.349 (3)
C1—N11.4666 (16)C11—H110.9300
C2—C31.372 (2)C12—C131.4114 (19)
C2—H20.9300C12—H120.9300
C3—C41.3780 (19)C13—C141.400 (2)
C3—H30.9300C13—C171.4039 (18)
C4—C51.3906 (16)C14—C151.360 (2)
C4—H40.9300C14—H140.9300
C5—C61.3965 (17)C15—C161.386 (2)
C5—C71.4940 (16)C15—H150.9300
C6—C81.5184 (16)C16—N21.3141 (17)
C7—O21.2060 (15)C16—H160.9300
C7—O11.3101 (16)C17—N21.3663 (16)
C8—O41.2453 (14)N1—O61.2120 (16)
C8—O31.2516 (14)N1—O51.2146 (15)
C9—C101.362 (2)N2—H2A0.908 (9)
C9—C171.3996 (19)O1—H1A0.840 (9)
C9—H90.9300O7—H7A0.833 (9)
C10—C111.394 (3)O7—H7B0.836 (9)
C2—C1—C6123.08 (12)C12—C11—C10120.79 (14)
C2—C1—N1116.78 (11)C12—C11—H11119.6
C6—C1—N1120.12 (11)C10—C11—H11119.6
C3—C2—C1119.09 (12)C11—C12—C13120.66 (15)
C3—C2—H2120.5C11—C12—H12119.7
C1—C2—H2120.5C13—C12—H12119.7
C2—C3—C4119.75 (12)C14—C13—C17118.44 (12)
C2—C3—H3120.1C14—C13—C12123.75 (13)
C4—C3—H3120.1C17—C13—C12117.82 (13)
C3—C4—C5120.73 (12)C15—C14—C13120.41 (13)
C3—C4—H4119.6C15—C14—H14119.8
C5—C4—H4119.6C13—C14—H14119.8
C4—C5—C6120.78 (11)C14—C15—C16119.16 (13)
C4—C5—C7119.05 (11)C14—C15—H15120.4
C6—C5—C7120.17 (10)C16—C15—H15120.4
C1—C6—C5116.47 (10)N2—C16—C15121.06 (12)
C1—C6—C8124.05 (11)N2—C16—H16119.5
C5—C6—C8119.47 (10)C15—C16—H16119.5
O2—C7—O1124.07 (12)N2—C17—C9120.40 (12)
O2—C7—C5123.32 (11)N2—C17—C13118.71 (11)
O1—C7—C5112.60 (10)C9—C17—C13120.89 (12)
O4—C8—O3126.02 (11)O6—N1—O5122.75 (13)
O4—C8—C6117.19 (10)O6—N1—C1118.55 (11)
O3—C8—C6116.67 (10)O5—N1—C1118.69 (12)
C10—C9—C17119.08 (14)C16—N2—C17122.19 (11)
C10—C9—H9120.5C16—N2—H2A118.7 (12)
C17—C9—H9120.5C17—N2—H2A119.1 (12)
C9—C10—C11120.77 (15)C7—O1—H1A109.7 (14)
C9—C10—H10119.6H7A—O7—H7B110.4 (18)
C11—C10—H10119.6
C6—C1—C2—C3−1.47 (19)C17—C9—C10—C11−0.1 (3)
N1—C1—C2—C3176.70 (11)C9—C10—C11—C12−0.2 (3)
C1—C2—C3—C4−1.4 (2)C10—C11—C12—C130.3 (3)
C2—C3—C4—C52.4 (2)C11—C12—C13—C14−179.82 (16)
C3—C4—C5—C6−0.64 (18)C11—C12—C13—C17−0.1 (2)
C3—C4—C5—C7179.28 (12)C17—C13—C14—C15−0.7 (2)
C2—C1—C6—C53.15 (17)C12—C13—C14—C15179.01 (16)
N1—C1—C6—C5−174.97 (10)C13—C14—C15—C161.9 (2)
C2—C1—C6—C8−178.10 (11)C14—C15—C16—N2−1.5 (2)
N1—C1—C6—C83.78 (17)C10—C9—C17—N2−179.26 (14)
C4—C5—C6—C1−2.06 (16)C10—C9—C17—C130.3 (2)
C7—C5—C6—C1178.02 (10)C14—C13—C17—N2−0.92 (19)
C4—C5—C6—C8179.13 (11)C12—C13—C17—N2179.37 (13)
C7—C5—C6—C8−0.78 (16)C14—C13—C17—C9179.54 (14)
C4—C5—C7—O2−153.38 (13)C12—C13—C17—C9−0.2 (2)
C6—C5—C7—O226.54 (18)C2—C1—N1—O6−173.03 (12)
C4—C5—C7—O127.15 (16)C6—C1—N1—O65.20 (17)
C6—C5—C7—O1−152.93 (11)C2—C1—N1—O57.53 (17)
C1—C6—C8—O4−100.90 (14)C6—C1—N1—O5−174.24 (12)
C5—C6—C8—O477.82 (14)C15—C16—N2—C17−0.1 (2)
C1—C6—C8—O382.81 (15)C9—C17—N2—C16−179.12 (13)
C5—C6—C8—O3−98.48 (13)C13—C17—N2—C161.3 (2)
D—H···AD—HH···AD···AD—H···A
O7—H7A···O40.83 (1)1.92 (1)2.7416 (14)171 (19)
O7—H7B···O4i0.84 (1)2.02 (1)2.8459 (14)169 (18)
O1—H1A···O7ii0.84 (1)1.75 (1)2.5818 (14)173 (2)
N2—H2A···O3iii0.91 (1)1.74 (1)2.6425 (14)176 (18)
C16—H16···O4iii0.932.493.1166 (17)125
C16—H16···O2iv0.932.393.1278 (17)136
C12—H12···N10.932.613.4866 (19)157
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O7H7AO40.83(1)1.92(1)2.7416(14)171(19)
O7H7BO4i 0.84(1)2.02(1)2.8459(14)169(18)
O1H1AO7ii 0.84(1)1.75(1)2.5818(14)173(2)
N2H2AO3iii 0.91(1)1.74(1)2.6425(14)176(18)
C16H16O4iii 0.932.493.1166(17)125
C16H16O2iv 0.932.393.1278(17)136
C12H12N10.932.613.4866(19)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiinflammatory and antiarthritic properties of a substituted quinoline carboxylic acid: CL 306,293.

Authors:  A E Sloboda; D Powell; J F Poletto; W C Pickett; J J Gibbons; D H Bell; A L Oronsky; S S Kerwar
Journal:  J Rheumatol       Date:  1991-06       Impact factor: 4.666

3.  Structure-activity relationships in quinoline Reissert derivatives with HIV-1 reverse transcriptase inhibitory activity.

Authors:  M Font; A Monge; I Ruiz; B Heras
Journal:  Drug Des Discov       Date:  1997-04

4.  3-Ethyl-3-hy-droxy-8-meth-oxy-quinoline-2,4(1H,3H)-dione monohydrate.

Authors:  Stanislav Kafka; Andrej Pevec; Karel Proisl; Roman Kimmel; Janez Košmrlj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-24

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  Crystal structure of 8-hy-droxy-quinoline: a new monoclinic polymorph.

Authors:  Raúl Castañeda; Sofia A Antal; Sergiu Draguta; Tatiana V Timofeeva; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  6 in total

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