| Literature DB >> 25995873 |
Gerhard Laus1, Volker Kahlenberg2, Thomas Gelbrich1, Sven Nerdinger3, Herwig Schottenberger1.
Abstract
Mutual carbox-yl-carboxyl O-H⋯O hydrogen bonds link the mol-ecules of the title compound, C7H5BrO3, into centrosymmetric dimers which display a central R 2 (2)(8) ring motif. In addition, there is an intra-molecular hydrox-yl-carboxyl O-H⋯O inter-action present. A comparison with the crystal structures of 59 other substituted derivatives of salicylic acid shows that both the centrosymmetric carbox-yl-carboxyl O-H⋯O dimer and the stacking mode of mol-ecules along the short a axis observed in the title structure are frequent packing motifs in this set.Entities:
Keywords: XPac; crystal structure; hydrogen bonding; salicylic acid derivative; structural systematics
Year: 2015 PMID: 25995873 PMCID: PMC4420063 DOI: 10.1107/S2056989015007331
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, drawn with displacement ellipsoids at the 50% probability level. H atoms are drawn as spheres of arbitrary size.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1O3 | 0.85(2) | 1.88(4) | 2.604(4) | 142(5) |
| O2H2O3i | 0.87(2) | 1.80(2) | 2.664(4) | 172(6) |
Symmetry code: (i) .
Figure 2Centrosymmetric dimer with a central (8) ring motif. Dashed lines indicate hydrogen bonds. [Symmetry code: (i) −x + 2, −y, −z + 1.]
Figure 3(a) Molecular packing in the (10) plane. Dashed lines indicate O—H⋯O hydrogen bonds; C4—H4⋯O1(−x + , y + , −z + ) contacts are indicated by thin dotted lines. Similar arrangements are present in the crystal structures of 3,5-Br and 3,5-Cl (supramolecular construct S2). (b) Three corrugated sheets stacked in the a-axis direction.
Figure 4Scheme showing the general composition of substituted derivatives of salicylic acid, the crystal structures of which were compared in this study.
Figure 5(Left) Tree diagram illustrating the packing relationships between 3-Br and other substituted derivatives of salicylic acid. A number in a box indicates the number of crystal structures for which a given SC (A0, X11, A11 and S2) is the largest common SC with 3-Br. (Right) Instances of the SCs A0, X11, A11 in 3-Br.
One-dimensional packing relationships between 3-Br and other derivatives of salicylic acid, based on the stacking of either individual molecules (X11) or dimers (A11) along the short crystallographic axis and identified with XPac
| Compound | SC |
|
| CSD code | reference |
|---|---|---|---|---|---|
| 3-Br | A11 | - | 3.80 | - | This work |
| 5-F | A11 | 4.2 | 3.82 | ABENEB | Choudhury Guru Row (2004 |
| 5-COOH | A11 | 4.8 | 3.68 | OJICEP | Cox Murphy (2003 |
| 3,4-OH0.25H2O | A11 | 5.6 | 3.73 | LAPZUZ | Li |
| 5-OMe | A11 | 5.6 | 3.98 | VAXZUR | Montis Hursthouse (2012 |
| 5-Cl | A11 | 7.1 | 3.71 | VABVAX01 | Montis Hursthouse (2012 |
| 4-Cl | A11 | 9.2 | 3.72 | VAXYAW | Montis Hursthouse (2012 |
| 5-NO | A11 | 9.5 | 3.67 | NTSALA | Talberg (1977 |
| 4-NH2 | A11 | 10.3 | 3.73 | AMSALA02 | Montis Hursthouse (2012 |
| 4-OH | A11 | 10.7 | 3.69 | ZZZEEU04 | Parkin |
| 4-Me | A11 | 11.5 | 3.87 | VAXYIE | Montis Hursthouse (2012 |
| 5-ACMH2O | X11 | 2.2 | 3.75 | VAXYOK | Montis Hursthouse (2012 |
| 5-CHO | X11 | 5.6 | 3.78 | UJOFEF | Lu |
| 3-CHOH2O | X11 | 11.1 | 3.72 | JOHXEJ | Claude |
Notes: (a) the largest supramolecular construct which a crystal has in common with that of 3-Br; (b) XPac dissimilarity index computed from intermolecular geometrical parameters which were calculated using the ten non-H atomic positions of the common salicylic acid molecular fragment; (c) the length of the X11 stacking vector.
Experimental details
| Crystal data | |
| Chemical formula | C7H5BrO3 |
|
| 217.02 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 173 |
|
| 3.7978(4), 10.5567(6), 18.0366(10) |
| () | 90.208(7) |
|
| 723.12(10) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 5.63 |
| Crystal size (mm) | 0.32 0.16 0.08 |
| Data collection | |
| Diffractometer | Agilent Xcalibur (Ruby, Gemini ultra) |
| Absorption correction | Multi-scan ( |
|
| 0.094, 1 |
| No. of measured, independent and observed [ | 4627, 1594, 1309 |
|
| 0.040 |
| (sin /)max (1) | 0.684 |
| Refinement | |
|
| 0.040, 0.100, 1.08 |
| No. of reflections | 1594 |
| No. of parameters | 108 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 1.19, 0.79 |
Computer programs: CrysAlis PRO (Agilent, 2012 ▸), SUPERFLIP (Palatinus Chapuis, 2007 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸), Mercury (Macrae et al., 2006 ▸), XP (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C7H5BrO3 | |
| Monoclinic, | Mo |
| Cell parameters from 1701 reflections | |
| θ = 3.0–28.1° | |
| µ = 5.63 mm−1 | |
| β = 90.208 (7)° | |
| Plate, colourless | |
| 0.32 × 0.16 × 0.08 mm |
| Agilent Xcalibur (Ruby, Gemini ultra) diffractometer | 1594 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1309 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.3575 pixels mm-1 | θmax = 29.1°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4627 measured reflections |
| Refinement on | Primary atom site location: iterative |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1594 reflections | (Δ/σ)max < 0.001 |
| 108 parameters | Δρmax = 1.19 e Å−3 |
| 2 restraints | Δρmin = −0.79 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Br1 | 0.28846 (10) | 0.31635 (3) | 0.19518 (2) | 0.02717 (17) | |
| O2 | 0.9783 (9) | 0.1747 (2) | 0.51138 (16) | 0.0323 (7) | |
| H2 | 1.055 (16) | 0.109 (4) | 0.535 (3) | 0.08 (2)* | |
| O1 | 0.5137 (8) | 0.1225 (2) | 0.30358 (15) | 0.0304 (7) | |
| H1 | 0.574 (15) | 0.064 (4) | 0.334 (3) | 0.060 (16)* | |
| O3 | 0.7802 (8) | 0.0380 (2) | 0.42729 (15) | 0.0330 (7) | |
| C3 | 0.4674 (10) | 0.3437 (3) | 0.2917 (2) | 0.0214 (8) | |
| C2 | 0.5652 (10) | 0.2381 (3) | 0.3340 (2) | 0.0216 (8) | |
| C1 | 0.7081 (10) | 0.2576 (3) | 0.4042 (2) | 0.0214 (8) | |
| C7 | 0.8233 (10) | 0.1476 (4) | 0.4484 (2) | 0.0241 (8) | |
| C4 | 0.5058 (10) | 0.4649 (3) | 0.3191 (2) | 0.0251 (8) | |
| H4 | 0.4369 | 0.5356 | 0.2899 | 0.030* | |
| C6 | 0.7467 (10) | 0.3806 (3) | 0.4318 (2) | 0.0242 (8) | |
| H6 | 0.8432 | 0.3935 | 0.4799 | 0.029* | |
| C5 | 0.6454 (11) | 0.4832 (4) | 0.3896 (2) | 0.0284 (9) | |
| H5 | 0.6711 | 0.5666 | 0.4087 | 0.034* |
| Br1 | 0.0292 (3) | 0.0333 (3) | 0.0190 (3) | 0.00063 (15) | −0.00907 (17) | 0.00363 (14) |
| O2 | 0.049 (2) | 0.0296 (16) | 0.0187 (16) | 0.0017 (12) | −0.0129 (14) | 0.0054 (11) |
| O1 | 0.0443 (19) | 0.0232 (15) | 0.0234 (16) | 0.0006 (12) | −0.0131 (13) | 0.0003 (11) |
| O3 | 0.049 (2) | 0.0252 (15) | 0.0250 (16) | 0.0053 (12) | −0.0134 (13) | 0.0000 (11) |
| C3 | 0.019 (2) | 0.034 (2) | 0.0118 (19) | 0.0021 (15) | −0.0018 (15) | 0.0026 (14) |
| C2 | 0.0177 (19) | 0.027 (2) | 0.020 (2) | −0.0001 (14) | −0.0004 (15) | 0.0025 (14) |
| C1 | 0.0155 (19) | 0.030 (2) | 0.018 (2) | 0.0012 (14) | 0.0004 (15) | 0.0031 (14) |
| C7 | 0.022 (2) | 0.035 (2) | 0.015 (2) | 0.0033 (15) | −0.0009 (16) | 0.0018 (15) |
| C4 | 0.023 (2) | 0.027 (2) | 0.026 (2) | 0.0009 (15) | −0.0025 (17) | 0.0022 (15) |
| C6 | 0.026 (2) | 0.028 (2) | 0.018 (2) | −0.0012 (15) | −0.0051 (16) | −0.0004 (14) |
| C5 | 0.033 (2) | 0.020 (2) | 0.031 (2) | −0.0008 (15) | −0.0031 (18) | −0.0001 (14) |
| Br1—C3 | 1.889 (4) | C2—C1 | 1.391 (5) |
| O2—C7 | 1.309 (5) | C1—C6 | 1.398 (6) |
| O2—H2 | 0.87 (2) | C1—C7 | 1.474 (5) |
| O1—C2 | 1.352 (5) | C4—C5 | 1.388 (6) |
| O1—H1 | 0.85 (2) | C4—H4 | 0.9500 |
| O3—C7 | 1.229 (5) | C6—C5 | 1.379 (5) |
| C3—C4 | 1.379 (5) | C6—H6 | 0.9500 |
| C3—C2 | 1.400 (5) | C5—H5 | 0.9500 |
| C7—O2—H2 | 114 (4) | O3—C7—C1 | 122.4 (3) |
| C2—O1—H1 | 111 (4) | O2—C7—C1 | 115.4 (3) |
| C4—C3—C2 | 121.0 (4) | C3—C4—C5 | 119.8 (3) |
| C4—C3—Br1 | 120.7 (3) | C3—C4—H4 | 120.1 |
| C2—C3—Br1 | 118.3 (3) | C5—C4—H4 | 120.1 |
| O1—C2—C1 | 123.9 (3) | C5—C6—C1 | 120.3 (4) |
| O1—C2—C3 | 117.4 (3) | C5—C6—H6 | 119.9 |
| C1—C2—C3 | 118.7 (3) | C1—C6—H6 | 119.9 |
| C2—C1—C6 | 120.1 (3) | C6—C5—C4 | 120.1 (3) |
| C2—C1—C7 | 119.3 (3) | C6—C5—H5 | 120.0 |
| C6—C1—C7 | 120.6 (3) | C4—C5—H5 | 120.0 |
| O3—C7—O2 | 122.2 (3) | ||
| C4—C3—C2—O1 | 178.9 (4) | C6—C1—C7—O3 | 176.9 (4) |
| Br1—C3—C2—O1 | −2.2 (5) | C2—C1—C7—O2 | 175.1 (3) |
| C4—C3—C2—C1 | −1.0 (6) | C6—C1—C7—O2 | −3.8 (5) |
| Br1—C3—C2—C1 | 177.9 (3) | C2—C3—C4—C5 | 0.4 (6) |
| O1—C2—C1—C6 | −178.9 (3) | Br1—C3—C4—C5 | −178.5 (3) |
| C3—C2—C1—C6 | 1.0 (5) | C2—C1—C6—C5 | −0.3 (6) |
| O1—C2—C1—C7 | 2.1 (6) | C7—C1—C6—C5 | 178.6 (4) |
| C3—C2—C1—C7 | −178.0 (3) | C1—C6—C5—C4 | −0.3 (6) |
| C2—C1—C7—O3 | −4.2 (6) | C3—C4—C5—C6 | 0.3 (6) |
| H··· | ||||
| O1—H1···O3 | 0.85 (2) | 1.88 (4) | 2.604 (4) | 142 (5) |
| O2—H2···O3i | 0.87 (2) | 1.80 (2) | 2.664 (4) | 172 (6) |