Literature DB >> 25995873

Crystal structure of 3-bromo-2-hy-droxy-benzoic acid.

Gerhard Laus1, Volker Kahlenberg2, Thomas Gelbrich1, Sven Nerdinger3, Herwig Schottenberger1.   

Abstract

Mutual carbox-yl-carboxyl O-H⋯O hydrogen bonds link the mol-ecules of the title compound, C7H5BrO3, into centrosymmetric dimers which display a central R 2 (2)(8) ring motif. In addition, there is an intra-molecular hydrox-yl-carboxyl O-H⋯O inter-action present. A comparison with the crystal structures of 59 other substituted derivatives of salicylic acid shows that both the centrosymmetric carbox-yl-carboxyl O-H⋯O dimer and the stacking mode of mol-ecules along the short a axis observed in the title structure are frequent packing motifs in this set.

Entities:  

Keywords:  XPac; crystal structure; hydrogen bonding; salicylic acid derivative; structural systematics

Year:  2015        PMID: 25995873      PMCID: PMC4420063          DOI: 10.1107/S2056989015007331

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Substituted derivatives of salicylic acid are widely used in organic synthesis and can be biologically active. Members of this class have served as model compounds for studies of crystal polymorphism (Sarma et al., 2010 ▸; Braun et al., 2011 ▸), the stability of hydrogen bonds (Bawa et al., 2004 ▸; Adam et al., 2010 ▸) or for systematic investigations of crystal-packing relationships (Montis & Hursthouse, 2012 ▸). The title compound is used in the synthesis of 7-bromo­benzoxazolin-2-one (Laus et al., 2011 ▸), which is an inter­mediate in the synthesis of bifeprunox, an experimental drug for the treatment of psychiatric disorders such as schizophrenia (Zwier et al., 2005 ▸; Eijgendaal et al., 2006 ▸).

Structural commentary

The mol­ecule is almost planar (Fig. 1 ▸). The plane defined by the non-H atoms of the carboxyl group is slightly twisted by 4.7 (4)° to the mean plane of the phenyl ring. An intra­molecular hydrogen bond, O1—H1⋯O3 (Table 1 ▸), connects the hydroxyl group bonded to C2 with the carboxyl group at C1.
Figure 1

The mol­ecular structure of the title compound, drawn with displacement ellipsoids at the 50% probability level. H atoms are drawn as spheres of arbitrary size.

Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1O30.85(2)1.88(4)2.604(4)142(5)
O2H2O3i 0.87(2)1.80(2)2.664(4)172(6)

Symmetry code: (i) .

Supra­molecular features

Neighbouring mol­ecules are linked to one another by a two-point O2—H2⋯O3(−x + 2, −y, −z + 1) connection involving a pair of anti­parallel inter­actions between their carboxyl groups (Fig. 2 ▸, Table 1 ▸). The resulting centrosymmetric dimer is described by the graph set (8) (Etter et al. 1990 ▸; Bernstein et al., 1995 ▸). In the crystal structure, the dimers, which are essentially planar units, assemble into slightly corrugated sheets which lie parallel to the (10) plane. A sheet of this kind contains a short C4—H4⋯O1(−x + , y + , −z + ) contact (H⋯O = 2.57 Å, C—H⋯O = 145.7°) (Fig. 3 ▸ a) which involves the hydroxyl group at C2. The sheets are stacked in a parallel fashion in the a-axis direction with an inter­sheet separation of 3.798 (4) Å which corresponds to the length of this axis.
Figure 2

Centrosymmetric dimer with a central (8) ring motif. Dashed lines indicate hydrogen bonds. [Symmetry code: (i) −x + 2, −y, −z + 1.]

Figure 3

(a) Mol­ecular packing in the (10) plane. Dashed lines indicate O—H⋯O hydrogen bonds; C4—H4⋯O1(−x + , y + , −z + ) contacts are indicated by thin dotted lines. Similar arrangements are present in the crystal structures of 3,5-Br and 3,5-Cl (supra­molecular construct S2). (b) Three corrugated sheets stacked in the a-axis direction.

Database survey

A systematic study of packing motifs present in 24 crystal structures of monosubstituted derivatives of salicylic acid has previously been published by Montis & Hursthouse (2012 ▸), who also proposed a nomenclature where a substituent R at a ring position n (n = 3, 4, 5 or 6) is encoded n-R (Fig. 4 ▸; R ≠ H). The title compound of the present study is denoted 3-Br in this system. Our own survey of the Cambridge Structural Database (version 5.25; Groom & Allen, 2014 ▸) revealed 59 unique crystal structures of salicylic acid derivatives, listed in Table S1 of the Supporting information, which are close structural analogues of 3-Br. This set includes several polysubstituted derivatives as well as multiple-component crystals and crystal structures containing potential hydrogen bond donor and acceptor sites in addition to those of the 1-hydroxyl and 2-carboxyl groups.
Figure 4

Scheme showing the general composition of substituted derivatives of salicylic acid, the crystal structures of which were compared in this study.

In order to establish the possible existence of geometrically similar substructure units, pairwise XPac comparisons (Gelbrich & Hursthouse, 2005 ▸) were carried out between the crystal structure of 3-Br on one hand and each of the other 59 salicylic acid derivatives on the other. Analogous to the study by Montis & Hursthouse (2012 ▸), the underlying calculations were based on the comparison of inter­molecular geometrical parameters generated from the ten non-H atomic positions of the salicylic acid mol­ecular core (C7O3) which is present in all compounds of the set. A qu­anti­tative descriptor, the dissimilarity index x 10 (Gelbrich et al., 2012 ▸), was calculated for each common supra­molecular construct (SC) identified. In general, a larger x 10 value indicates a lower degree of similarity and an x 10 value significantly higher than 10 is consistent with a situation where the fundamental features of a 3-Br substructure unit are also present in a second crystal, albeit with considerable geometrical modifications. 41 structures of the investigated set, including 3-Br, contain (carbox­yl)O—H⋯O(carbox­yl) hydrogen-bonded dimers with a central (8) ring motif (Fig. 2 ▸). All of the dimers are centrosymmetric, except for that of 3-COOH (Mereiter et al., 2001 ▸). In the latter structure, the (8) ring motif is inter­sected by a glide plane and connects the 2-carboxyl group of one mol­ecule with the 3-carboxyl group of the other so that an hydrogen-bonded chain structure is formed. Owing to the rigidity of the aromatic ring and the limited rotational flexibility about the C1—C7 bond, all 40 centrosymmetric dimers adopt approximately the same geometry, and the corres­ponding x 10 values are smaller than 12 (Table S1 of the Supporting information). In keeping with the nomenclature introduced by Montis & Hursthouse (2012 ▸), we denote this dimer SC A0. A one-periodic SC, denoted X11 by Montis & Hursthouse (2012 ▸), describes the stacking of 3-Br mol­ecules along the shortest crystallographic axis [a axis; Fig. 5 ▸(right)]. We have identified another 21 examples of the same stacking mode (Table S1 of the Supporting Information) and the 13 best matches with x 10 > 12 are listed in Table 2 ▸. In this latter subset, the length of the stacking vector varies from 3.67 to 3.98 Å. Moreover, the eleven structures listed in the top section of Table 2 ▸ also contain a centrosymmetric dimer so that their common SC is actually a stack of dimers [denoted A11; Fig. 5 ▸(right)].
Figure 5

(Left) Tree diagram illustrating the packing relationships between 3-Br and other substituted derivatives of salicylic acid. A number in a box indicates the number of crystal structures for which a given SC (A0, X11, A11 and S2) is the largest common SC with 3-Br. (Right) Instances of the SCs A0, X11, A11 in 3-Br.

Table 2

One-dimensional packing relationships between 3-Br and other derivatives of salicylic acid, based on the stacking of either individual molecules (X11) or dimers (A11) along the short crystallographic axis and identified with XPac

CompoundSCa x 10 b d ()c CSD codereference
3-BrA11-3.80-This work
5-FA114.23.82ABENEBChoudhury Guru Row (2004)
5-COOHA114.83.68OJICEPCox Murphy (2003)
3,4-OH0.25H2OA115.63.73LAPZUZLi et al. (2012)
5-OMeA115.63.98VAXZURMontis Hursthouse (2012)
5-ClA117.13.71VABVAX01Montis Hursthouse (2012)
4-ClA119.23.72VAXYAWMontis Hursthouse (2012)
5-NOA119.53.67NTSALATalberg (1977)
4-NH2 A1110.33.73AMSALA02Montis Hursthouse (2012)
4-OHA1110.73.69ZZZEEU04Parkin et al. (2007)
4-MeA1111.53.87VAXYIEMontis Hursthouse (2012)
5-ACMH2OX112.23.75VAXYOKMontis Hursthouse (2012)
5-CHOX115.63.78UJOFEFLu et al. (2010)
3-CHOH2OX1111.13.72JOHXEJClaude et al. (1991)

Notes: (a) the largest supramolecular construct which a crystal has in common with that of 3-Br; (b) XPac dissimilarity index computed from intermolecular geometrical parameters which were calculated using the ten non-H atomic positions of the common salicylic acid molecular fragment; (c) the length of the X11 stacking vector.

Other noteworthy packing relationships exist between 3-Br and the structures of 3,5-Br (XISGEM; Liu et al., 2008 ▸) and 3,5-Cl (WECXAE; Gao et al., 2005 ▸). These are based on the sheet structure which lies parallel to (10) in the 3-Br crystal and is depicted in Fig. 3 ▸ a. The corresponding x 10 values of 11.8 and 12.4 for this 2-periodic SC [denoted S2 in Fig. 5 ▸(left)] indicate a relaxed form of geometrical similarity, which is consistent with the accommodation of additional halogen substituents in the planes of 3,5-Cl and 3,5-Br. Moreover, the short C4—H4⋯O1 contact found in 3-Br (see above) is replaced by other close contacts in the S2 instances of 3,5-Br and 3,5-Cl. Table S2 of the Supporting information contains the corresponding crystallographic parameters associated with SC S2. A graphical overview of the packing relationships involving 3-Br and their inter­dependencies is given in Fig. 5 ▸(left).

Synthesis and crystallization

The title compound was prepared from 5-sulfosalicylic acid by bromination, followed by desulfonation in hot phospho­ric acid and, finally, purification by steam distillation, as described by Meldrum & Shah (1923 ▸). Single crystals were obtained by recrystallisation from hot water. 1H NMR (DMSO-d 6, 300 MHz): 6.87 (t, J = 7.9 Hz, 1H), 5.3 (br, 1H), 7.80 (d, J = 7.9 Hz, 2H), 11.5 (br, 1H) p.p.m. 13C NMR (DMSO-d 6, 75 MHz): 110.1, 114.3, 120.2 (CH), 129.7 (CH), 138.5 (CH), 157.6, 171.6 p.p.m. 1H NMR (CDCl3, 300 MHz): 6.85 (t, J = 7.9 Hz, 1H), 7.79 (dd, J = 7.9 and 1.6 Hz, 1H), 7.92 (dd, J = 7.9 and 1.6 Hz, 1H), 11.07 (s, 1H) p.p.m. 13C NMR (CDCl3, 75 MHz): 111.8, 112.8, 120.7 (CH), 130.6 (CH), 140.5 (CH), 159.0, 174.1 p.p.m. IR (neat): 2855, 2526, 1653, 1603, 1428, 1298, 1243, 1153, 851, 744, 677, 469 cm−1.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. Positions of hydrogen atoms bonded to carbon atoms were generated in idealized geometries using a riding model and their displacement parameters were set to U iso(H) = 1.2 U eq(C). The H atoms attached to O were identified from difference Fourier maps and their positions refined with restrained distances [O—H 0.86 (2) Å] and their isotropic thermal displacement parameters were refined freely.
Table 3

Experimental details

Crystal data
Chemical formulaC7H5BrO3
M r 217.02
Crystal system, space groupMonoclinic, P21/n
Temperature (K)173
a, b, c ()3.7978(4), 10.5567(6), 18.0366(10)
()90.208(7)
V (3)723.12(10)
Z 4
Radiation typeMo K
(mm1)5.63
Crystal size (mm)0.32 0.16 0.08
 
Data collection
DiffractometerAgilent Xcalibur (Ruby, Gemini ultra)
Absorption correctionMulti-scan (CrysAlis PRO; Agilent, 2012)
T min, T max 0.094, 1
No. of measured, independent and observed [I > 2(I)] reflections4627, 1594, 1309
R int 0.040
(sin /)max (1)0.684
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.040, 0.100, 1.08
No. of reflections1594
No. of parameters108
No. of restraints2
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
max, min (e 3)1.19, 0.79

Computer programs: CrysAlis PRO (Agilent, 2012 ▸), SUPERFLIP (Palatinus Chapuis, 2007 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸), Mercury (Macrae et al., 2006 ▸), XP (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015007331/wm5143sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007331/wm5143Isup2.hkl Supporting information file. DOI: 10.1107/S2056989015007331/wm5143Isup3.pdf Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007331/wm5143Isup4.cml CCDC reference: 1059331 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H5BrO3F(000) = 424
Mr = 217.02Dx = 1.993 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 3.7978 (4) ÅCell parameters from 1701 reflections
b = 10.5567 (6) Åθ = 3.0–28.1°
c = 18.0366 (10) ŵ = 5.63 mm1
β = 90.208 (7)°T = 173 K
V = 723.12 (10) Å3Plate, colourless
Z = 40.32 × 0.16 × 0.08 mm
Agilent Xcalibur (Ruby, Gemini ultra) diffractometer1594 independent reflections
Radiation source: Enhance (Mo) X-ray Source1309 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
Detector resolution: 10.3575 pixels mm-1θmax = 29.1°, θmin = 3.0°
ω scansh = −4→3
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −12→10
Tmin = 0.094, Tmax = 1l = −21→19
4627 measured reflections
Refinement on F2Primary atom site location: iterative
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0507P)2 + 0.2934P] where P = (Fo2 + 2Fc2)/3
1594 reflections(Δ/σ)max < 0.001
108 parametersΔρmax = 1.19 e Å3
2 restraintsΔρmin = −0.79 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.28846 (10)0.31635 (3)0.19518 (2)0.02717 (17)
O20.9783 (9)0.1747 (2)0.51138 (16)0.0323 (7)
H21.055 (16)0.109 (4)0.535 (3)0.08 (2)*
O10.5137 (8)0.1225 (2)0.30358 (15)0.0304 (7)
H10.574 (15)0.064 (4)0.334 (3)0.060 (16)*
O30.7802 (8)0.0380 (2)0.42729 (15)0.0330 (7)
C30.4674 (10)0.3437 (3)0.2917 (2)0.0214 (8)
C20.5652 (10)0.2381 (3)0.3340 (2)0.0216 (8)
C10.7081 (10)0.2576 (3)0.4042 (2)0.0214 (8)
C70.8233 (10)0.1476 (4)0.4484 (2)0.0241 (8)
C40.5058 (10)0.4649 (3)0.3191 (2)0.0251 (8)
H40.43690.53560.28990.030*
C60.7467 (10)0.3806 (3)0.4318 (2)0.0242 (8)
H60.84320.39350.47990.029*
C50.6454 (11)0.4832 (4)0.3896 (2)0.0284 (9)
H50.67110.56660.40870.034*
U11U22U33U12U13U23
Br10.0292 (3)0.0333 (3)0.0190 (3)0.00063 (15)−0.00907 (17)0.00363 (14)
O20.049 (2)0.0296 (16)0.0187 (16)0.0017 (12)−0.0129 (14)0.0054 (11)
O10.0443 (19)0.0232 (15)0.0234 (16)0.0006 (12)−0.0131 (13)0.0003 (11)
O30.049 (2)0.0252 (15)0.0250 (16)0.0053 (12)−0.0134 (13)0.0000 (11)
C30.019 (2)0.034 (2)0.0118 (19)0.0021 (15)−0.0018 (15)0.0026 (14)
C20.0177 (19)0.027 (2)0.020 (2)−0.0001 (14)−0.0004 (15)0.0025 (14)
C10.0155 (19)0.030 (2)0.018 (2)0.0012 (14)0.0004 (15)0.0031 (14)
C70.022 (2)0.035 (2)0.015 (2)0.0033 (15)−0.0009 (16)0.0018 (15)
C40.023 (2)0.027 (2)0.026 (2)0.0009 (15)−0.0025 (17)0.0022 (15)
C60.026 (2)0.028 (2)0.018 (2)−0.0012 (15)−0.0051 (16)−0.0004 (14)
C50.033 (2)0.020 (2)0.031 (2)−0.0008 (15)−0.0031 (18)−0.0001 (14)
Br1—C31.889 (4)C2—C11.391 (5)
O2—C71.309 (5)C1—C61.398 (6)
O2—H20.87 (2)C1—C71.474 (5)
O1—C21.352 (5)C4—C51.388 (6)
O1—H10.85 (2)C4—H40.9500
O3—C71.229 (5)C6—C51.379 (5)
C3—C41.379 (5)C6—H60.9500
C3—C21.400 (5)C5—H50.9500
C7—O2—H2114 (4)O3—C7—C1122.4 (3)
C2—O1—H1111 (4)O2—C7—C1115.4 (3)
C4—C3—C2121.0 (4)C3—C4—C5119.8 (3)
C4—C3—Br1120.7 (3)C3—C4—H4120.1
C2—C3—Br1118.3 (3)C5—C4—H4120.1
O1—C2—C1123.9 (3)C5—C6—C1120.3 (4)
O1—C2—C3117.4 (3)C5—C6—H6119.9
C1—C2—C3118.7 (3)C1—C6—H6119.9
C2—C1—C6120.1 (3)C6—C5—C4120.1 (3)
C2—C1—C7119.3 (3)C6—C5—H5120.0
C6—C1—C7120.6 (3)C4—C5—H5120.0
O3—C7—O2122.2 (3)
C4—C3—C2—O1178.9 (4)C6—C1—C7—O3176.9 (4)
Br1—C3—C2—O1−2.2 (5)C2—C1—C7—O2175.1 (3)
C4—C3—C2—C1−1.0 (6)C6—C1—C7—O2−3.8 (5)
Br1—C3—C2—C1177.9 (3)C2—C3—C4—C50.4 (6)
O1—C2—C1—C6−178.9 (3)Br1—C3—C4—C5−178.5 (3)
C3—C2—C1—C61.0 (5)C2—C1—C6—C5−0.3 (6)
O1—C2—C1—C72.1 (6)C7—C1—C6—C5178.6 (4)
C3—C2—C1—C7−178.0 (3)C1—C6—C5—C4−0.3 (6)
C2—C1—C7—O3−4.2 (6)C3—C4—C5—C60.3 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···O30.85 (2)1.88 (4)2.604 (4)142 (5)
O2—H2···O3i0.87 (2)1.80 (2)2.664 (4)172 (6)
  9 in total

1.  Structure and hydrogen bonding in 2,4-dihydroxybenzoic acid at 90, 100, 110 and 150 K; a theoretical and single-crystal X-ray diffraction study.

Authors:  Andrew Parkin; Martin Adam; Richard I Cooper; Derek S Middlemiss; Chick C Wilson
Journal:  Acta Crystallogr B       Date:  2007-03-16

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

4.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

5.  5-Formylsalicylic acid and 5-(benzimidazolium-2-yl)salicylate.

Authors:  Yu Bing Lu; Ping Yang; Wen Na Huang; Yan Na Yang; Jian Zhong Wu
Journal:  Acta Crystallogr C       Date:  2010-11-06       Impact factor: 1.172

6.  2-Hydroxyisophthalic acid: hydrogen-bonding patterns in the monohydrate and the tetraphenylphosphonium salt. An instance of dramatic acidity enhancement by symmetric, internally hydrogen-bonded anion stabilization.

Authors:  Shaleen Bawa; Marie L Coté; Patrick Dubois; Roger A Lalancette; Hugh W Thompson
Journal:  Acta Crystallogr B       Date:  2004-07-19

7.  Solid-State Forms of β-Resorcylic Acid: How Exhaustive Should a Polymorph Screen Be?

Authors:  Doris E Braun; Panagiotis G Karamertzanis; Jean-Baptiste Arlin; Alastair J Florence; Volker Kahlenberg; Derek A Tocher; Ulrich J Griesser; Sarah L Price
Journal:  Cryst Growth Des       Date:  2010-11-30       Impact factor: 4.076

8.  2,3,4-Trihy-droxy-benzoic acid 0.25-hydrate.

Authors:  Jin-Hang Li; Fu-Yue Dong; Fang Cai; Xiao-Feng Yuan; Ren-Wang Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.