Literature DB >> 22412689

2,3,4-Trihy-droxy-benzoic acid 0.25-hydrate.

Jin-Hang Li1, Fu-Yue Dong, Fang Cai, Xiao-Feng Yuan, Ren-Wang Jiang.   

Abstract

The asymmetric unit of the title compound, C(7)H(6)O(5)·0.25H(2)O, contains two mol-ecules of 2,3,4-trihy-droxy-benzoic acid, with similar conformations, and one water mol-ecule which lies on a twofold rotation axis. Both acid mol-ecules are essentially planar [maximum r.m.s deviations = 0.0324 (2) and 0.0542 (3) Å for the two acid molecules]. The mol-ecular conformations are stabilized by intra-molecular O(phenol)-H⋯O(carbox-yl/phenol) inter-actions. A cyclic inter-molecular association is formed between the two acid and one water mol-ecule [graph set R(3) (3)(12)] involving O-H⋯O hydrogen bonds. The two acid mol-ecules are further linked through a cyclic R(2) (2)(8) carb-oxy-lic acid hydrogen-bonding association, which together with inter-molecular O-H⋯O hydrogen-bonding inter-actions involving the phenol groups and the water mol-ecule, and weak π-π inter-actions [minimum ring centroid separation = 3.731 (3) Å], give a three-dimensional network.

Entities:  

Year:  2012        PMID: 22412689      PMCID: PMC3297886          DOI: 10.1107/S160053681200709X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the natural distribution of 2,3,4-trihy­droxy­benzoic acid, see: Zhai et al. (2010 ▶); Xu & Chang (2010 ▶). For its anti­oxidant and anti­bacterial activities, see: Kodama et al. (2007 ▶); Friedman et al. (2003 ▶). For the inhibition of xanthine oxidase, see: Chang et al. (1995 ▶). For the crystal structure of the dihydrate pseudopolymorph, see: Prior & Sharp (2010 ▶). For π–π inter­actions in gallic acid pyridine monosolvate and in natural flavonoids, see: Dong et al. (2011 ▶); Jiang et al. (2009 ▶, 2002 ▶). For graph-set analysis, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C7H6O5·0.25H2O M = 174.62 Orthorhombic, a = 11.8364 (12) Å b = 32.598 (3) Å c = 3.7306 (4) Å V = 1439.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.14 mm−1 T = 291 K 0.42 × 0.28 × 0.20 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.874, T max = 1.000 7863 measured reflections 2552 independent reflections 2010 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 0.97 2552 reflections 222 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1998 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200709X/zs2181sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200709X/zs2181Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200709X/zs2181Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6O5·0.25H2OF(000) = 724
Mr = 174.62Dx = 1.612 Mg m3
Orthorhombic, P21212Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2552 reflections
a = 11.8364 (12) Åθ = 2.1–50.0°
b = 32.598 (3) ŵ = 0.14 mm1
c = 3.7306 (4) ÅT = 291 K
V = 1439.4 (3) Å3Prism, light brown
Z = 80.42 × 0.28 × 0.20 mm
Bruker SMART 1000 CCD diffractometer2552 independent reflections
Radiation source: fine-focus sealed tube2010 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
ω scanθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −13→14
Tmin = 0.874, Tmax = 1.000k = −38→34
7863 measured reflectionsl = −4→4
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0443P)2] where P = (Fo2 + 2Fc2)/3
2552 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W0.50000.0000−0.1102 (7)0.0395 (6)
H1WA0.52630.01730.02580.059*
O10.65345 (12)0.12870 (4)0.2193 (5)0.0334 (4)
H1A0.66370.15340.19000.040*
O20.65656 (13)0.04688 (4)0.3549 (4)0.0323 (4)
H2A0.61450.06400.44440.039*
O30.84576 (14)0.00203 (5)0.2010 (5)0.0445 (5)
H3A0.7859−0.00480.29400.053*
O40.75826 (14)0.19200 (4)−0.0346 (6)0.0429 (5)
O50.93058 (15)0.18491 (4)−0.2704 (6)0.0481 (5)
H5B0.92430.2098−0.29190.058*
C10.84467 (19)0.12653 (6)−0.0250 (7)0.0273 (5)
C20.74982 (19)0.10787 (6)0.1337 (6)0.0245 (5)
C30.74932 (18)0.06626 (6)0.2074 (6)0.0254 (5)
C40.84311 (19)0.04271 (6)0.1272 (7)0.0295 (5)
C50.9374 (2)0.06046 (7)−0.0324 (7)0.0330 (6)
H5A0.99980.0444−0.08910.040*
C60.9383 (2)0.10180 (7)−0.1064 (7)0.0313 (6)
H6A1.00180.1135−0.21170.038*
C70.8406 (2)0.17017 (7)−0.1079 (7)0.0310 (6)
O1'0.49399 (13)0.17376 (4)−0.2824 (5)0.0359 (4)
H1'A0.48560.1982−0.32700.043*
O2'0.49999 (12)0.09083 (4)−0.2151 (5)0.0308 (4)
H2'A0.53800.1075−0.10330.037*
O3'0.32290 (14)0.04439 (4)−0.4474 (5)0.0397 (5)
H3'A0.38170.0378−0.34640.048*
O4'0.39072 (15)0.23703 (5)−0.5434 (6)0.0446 (5)
O5'0.22055 (15)0.23003 (5)−0.7935 (6)0.0506 (5)
H5'B0.22940.2547−0.82590.061*
C1'0.3088 (2)0.17066 (7)−0.5659 (7)0.0293 (6)
C2'0.40325 (19)0.15242 (6)−0.4052 (6)0.0271 (6)
C3'0.40863 (19)0.11019 (6)−0.3646 (6)0.0267 (5)
C4'0.31874 (19)0.08593 (6)−0.4795 (7)0.0281 (6)
C5'0.22322 (19)0.10389 (7)−0.6322 (7)0.0328 (6)
H5'A0.16300.0876−0.70560.039*
C6'0.2185 (2)0.14569 (7)−0.6737 (7)0.0336 (6)
H6'A0.15460.1576−0.77460.040*
C7'0.3098 (2)0.21492 (7)−0.6310 (7)0.0349 (6)
U11U22U33U12U13U23
O1W0.0469 (15)0.0229 (11)0.0486 (16)−0.0056 (10)0.0000.000
O10.0299 (9)0.0177 (7)0.0527 (11)0.0023 (6)0.0057 (9)0.0020 (8)
O20.0280 (9)0.0212 (8)0.0475 (11)0.0003 (6)0.0064 (8)0.0020 (8)
O30.0386 (10)0.0215 (8)0.0734 (13)0.0038 (7)0.0121 (10)0.0077 (10)
O40.0398 (11)0.0244 (8)0.0644 (13)−0.0006 (8)0.0084 (10)0.0075 (9)
O50.0463 (11)0.0268 (9)0.0713 (14)−0.0031 (8)0.0157 (11)0.0094 (10)
C10.0298 (13)0.0244 (11)0.0278 (13)−0.0029 (10)−0.0040 (11)0.0009 (11)
C20.0265 (12)0.0208 (11)0.0261 (13)0.0014 (9)−0.0058 (11)−0.0024 (10)
C30.0285 (13)0.0211 (11)0.0268 (12)−0.0056 (9)−0.0017 (11)0.0004 (10)
C40.0334 (14)0.0193 (11)0.0359 (14)0.0014 (10)−0.0033 (12)0.0009 (11)
C50.0278 (14)0.0303 (13)0.0409 (15)0.0041 (10)0.0006 (12)−0.0034 (12)
C60.0257 (13)0.0324 (13)0.0360 (15)−0.0042 (10)−0.0001 (12)0.0006 (11)
C70.0315 (14)0.0255 (12)0.0361 (14)−0.0068 (11)−0.0040 (12)0.0019 (11)
O1'0.0346 (9)0.0185 (7)0.0546 (11)−0.0032 (6)−0.0058 (10)0.0011 (8)
O2'0.0294 (9)0.0191 (7)0.0440 (10)0.0016 (6)−0.0038 (9)0.0011 (7)
O3'0.0408 (11)0.0207 (8)0.0575 (12)−0.0029 (7)−0.0115 (9)−0.0004 (9)
O4'0.0476 (12)0.0208 (8)0.0655 (14)0.0004 (8)−0.0142 (10)0.0057 (9)
O5'0.0482 (11)0.0279 (9)0.0758 (14)0.0047 (8)−0.0172 (12)0.0138 (10)
C1'0.0340 (14)0.0227 (12)0.0312 (13)0.0031 (10)0.0040 (11)−0.0003 (11)
C2'0.0295 (13)0.0221 (12)0.0297 (14)−0.0024 (10)0.0035 (12)−0.0021 (10)
C3'0.0280 (13)0.0231 (11)0.0290 (13)0.0037 (10)0.0045 (11)0.0009 (10)
C4'0.0334 (14)0.0199 (11)0.0311 (14)0.0005 (10)0.0052 (11)−0.0007 (11)
C5'0.0297 (14)0.0299 (12)0.0388 (15)−0.0033 (10)−0.0005 (12)−0.0019 (12)
C6'0.0342 (14)0.0326 (12)0.0339 (15)0.0051 (10)−0.0039 (12)0.0022 (12)
C7'0.0399 (16)0.0271 (13)0.0376 (15)0.0071 (11)0.0020 (12)0.0021 (12)
O1W—H1WA0.8200O1'—C2'1.359 (3)
O1—C21.365 (3)O1'—H1'A0.8200
O1—H1A0.8200O2'—C3'1.371 (3)
O2—C31.381 (3)O2'—H2'A0.8200
O2—H2A0.8200O3'—C4'1.360 (2)
O3—C41.355 (2)O3'—H3'A0.8200
O3—H3A0.8200O4'—C7'1.243 (3)
O4—C71.237 (3)O5'—C7'1.314 (3)
O5—C71.317 (3)O5'—H5'B0.8200
O5—H5B0.8200C1'—C2'1.401 (3)
C1—C61.404 (3)C1'—C6'1.403 (3)
C1—C21.407 (3)C1'—C7'1.463 (3)
C1—C71.457 (3)C2'—C3'1.386 (3)
C2—C31.384 (3)C3'—C4'1.393 (3)
C3—C41.382 (3)C4'—C5'1.395 (3)
C4—C51.391 (3)C5'—C6'1.373 (3)
C5—C61.376 (3)C5'—H5'A0.9300
C5—H5A0.9300C6'—H6'A0.9300
C6—H6A0.9300
C2—O1—H1A109.5C2'—O1'—H1'A109.5
C3—O2—H2A109.5C3'—O2'—H2'A109.5
C4—O3—H3A109.5C4'—O3'—H3'A109.5
C7—O5—H5B109.5C7'—O5'—H5'B109.5
C6—C1—C2118.2 (2)C2'—C1'—C6'119.0 (2)
C6—C1—C7122.8 (2)C2'—C1'—C7'118.9 (2)
C2—C1—C7119.0 (2)C6'—C1'—C7'122.1 (2)
O1—C2—C3115.9 (2)O1'—C2'—C3'115.8 (2)
O1—C2—C1123.35 (18)O1'—C2'—C1'123.89 (18)
C3—C2—C1120.7 (2)C3'—C2'—C1'120.3 (2)
O2—C3—C4118.08 (17)O2'—C3'—C2'122.5 (2)
O2—C3—C2122.06 (19)O2'—C3'—C4'117.79 (18)
C4—C3—C2119.9 (2)C2'—C3'—C4'119.7 (2)
O3—C4—C3121.2 (2)O3'—C4'—C3'120.7 (2)
O3—C4—C5118.4 (2)O3'—C4'—C5'118.9 (2)
C3—C4—C5120.4 (2)C3'—C4'—C5'120.4 (2)
C6—C5—C4119.9 (2)C6'—C5'—C4'119.7 (2)
C6—C5—H5A120.0C6'—C5'—H5'A120.1
C4—C5—H5A120.0C4'—C5'—H5'A120.1
C5—C6—C1120.9 (2)C5'—C6'—C1'120.8 (2)
C5—C6—H6A119.6C5'—C6'—H6'A119.6
C1—C6—H6A119.6C1'—C6'—H6'A119.6
O4—C7—O5122.0 (2)O4'—C7'—O5'121.6 (2)
O4—C7—C1122.7 (2)O4'—C7'—C1'122.3 (2)
O5—C7—C1115.3 (2)O5'—C7'—C1'116.1 (2)
C6—C1—C2—O1−178.9 (2)C6'—C1'—C2'—O1'−178.2 (2)
C7—C1—C2—O1−0.8 (3)C7'—C1'—C2'—O1'4.6 (4)
C6—C1—C2—C30.1 (3)C6'—C1'—C2'—C3'2.1 (4)
C7—C1—C2—C3178.2 (2)C7'—C1'—C2'—C3'−175.1 (2)
O1—C2—C3—O20.7 (3)O1'—C2'—C3'—O2'−0.9 (3)
C1—C2—C3—O2−178.4 (2)C1'—C2'—C3'—O2'178.8 (2)
O1—C2—C3—C4179.6 (2)O1'—C2'—C3'—C4'179.3 (2)
C1—C2—C3—C40.5 (3)C1'—C2'—C3'—C4'−1.0 (4)
O2—C3—C4—O3−2.0 (3)O2'—C3'—C4'—O3'−0.8 (3)
C2—C3—C4—O3179.0 (2)C2'—C3'—C4'—O3'179.0 (2)
O2—C3—C4—C5177.9 (2)O2'—C3'—C4'—C5'179.7 (2)
C2—C3—C4—C5−1.0 (4)C2'—C3'—C4'—C5'−0.5 (4)
O3—C4—C5—C6−179.1 (2)O3'—C4'—C5'—C6'−178.6 (2)
C3—C4—C5—C61.0 (4)C3'—C4'—C5'—C6'0.9 (4)
C4—C5—C6—C1−0.4 (4)C4'—C5'—C6'—C1'0.3 (4)
C2—C1—C6—C5−0.1 (4)C2'—C1'—C6'—C5'−1.8 (4)
C7—C1—C6—C5−178.2 (2)C7'—C1'—C6'—C5'175.3 (2)
C6—C1—C7—O4−179.6 (2)C2'—C1'—C7'—O4'−1.2 (4)
C2—C1—C7—O42.3 (4)C6'—C1'—C7'—O4'−178.3 (2)
C6—C1—C7—O51.0 (3)C2'—C1'—C7'—O5'177.7 (2)
C2—C1—C7—O5−177.1 (2)C6'—C1'—C7'—O5'0.6 (4)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O20.822.192.963 (2)156
O1W—H1WA···O2′0.822.582.987 (3)112
O1—H1A···O40.821.882.587 (3)143
O2—H2A···O2′i0.822.052.839 (4)161
O2—H2A···O10.822.322.715 (2)111
O3—H3A···O3′ii0.822.062.828 (3)155
O3—H3A···O20.822.292.735 (3)115
O5—H5B···O4′iii0.821.882.679 (4)165
O1′—H1′A···O4′0.821.872.588 (3)145
O2′—H2′A···O10.821.952.729 (4)159
O2′—H2′A···O1′0.822.322.716 (2)110
O3′—H3′A···O1W0.822.062.841 (3)158
O3′—H3′A···O2′0.822.282.727 (4)115
O5′—H5′B···O4iv0.821.852.659 (4)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O20.822.192.963 (2)156
O1—H1A⋯O40.821.882.587 (3)143
O2—H2A⋯O2′i0.822.052.839 (4)161
O3—H3A⋯O3′ii0.822.062.828 (3)155
O5—H5B⋯O4′iii0.821.882.679 (4)165
O1′—H1′A⋯O4′0.821.872.588 (3)145
O2′—H2′A⋯O10.821.952.729 (4)159
O3′—H3′A⋯O1W0.822.062.841 (3)158
O5′—H5′B⋯O4iv0.821.852.659 (4)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Inhibitory effects of phenolic carboxylic acid analogues on xanthine oxidase.

Authors:  W S Chang; G F Yan; H C Chiang
Journal:  Anticancer Res       Date:  1995 Sep-Oct       Impact factor: 2.480

4.  Phenolic substance characterization and chemical and cell-based antioxidant activities of 11 lentils grown in the northern United States.

Authors:  Baojun Xu; Sam K C Chang
Journal:  J Agric Food Chem       Date:  2010-02-10       Impact factor: 5.279

5.  Antibacterial activities of phenolic benzaldehydes and benzoic acids against Campylobacter jejuni, Escherichia coli, Listeria monocytogenes, and Salmonella enterica.

Authors:  Mendel Friedman; Philip R Henika; Robert E Mandrell
Journal:  J Food Prot       Date:  2003-10       Impact factor: 2.077

6.  Oxidative dimer produced from a 2,3,4-trihydroxybenzoic ester.

Authors:  Asuka Kodama; Hidetoshi Shibano; Jun Kawabata
Journal:  Biosci Biotechnol Biochem       Date:  2007-07-07       Impact factor: 2.043

7.  Gallic acid pyridine monosolvate.

Authors:  Fu-Yue Dong; Jie Wu; Hai-Yan Tian; Qing-Mei Ye; Ren-Wang Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  7 in total
  1 in total

1.  Crystal structure of 3-bromo-2-hy-droxy-benzoic acid.

Authors:  Gerhard Laus; Volker Kahlenberg; Thomas Gelbrich; Sven Nerdinger; Herwig Schottenberger
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-22
  1 in total

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