| Literature DB >> 25995859 |
Krishnasamy Mamallan1, Sadasivam Sharmila Tagore1, Sundaramoorthy Gomathi1, Velusamy Sethuraman1.
Abstract
In the title salt, C4H7N4O(+)·C7H7O3S(-), the 2,6-di-amino-4-oxo-1,3-di-hydro-pyrimidin-1-ium cation inter-acts with the sulfonate group of the p-toluene-sulfonate anion via a pair of N-H⋯O hydrogen bonds, forming a hetero-synthon R 2 (2)(8) that mimics the role of a carboxyl-ate. The self-assembled cations form a homo-synthon R 2 (1)(6) motif which is further linked with the sulfonate anion via N-H⋯O hydrogen bonds to generate an R 3 (2)(10) ring motif. The three motifs are fused together and extended as supra-molecular ribbons along the b-axis direction. Adjacent ribbons are further linked via N-H⋯O hydrogen bonds to form an annulus, with an R 4 (4)(20) ring motif, resulting in a tunnel-like arrangement propagating along [010]. There are slipped parallel π-π stacking inter-actions [inter-centroid distance = 3.6539 (7) Å], between the tunnel-like polymer chains, forming slabs parallel to (100).Entities:
Keywords: N—H⋯O hydrogen bonds; crystal structure; diaminopyrimidines; hydrogen bonding; p-toluenesulfonate; triaminopyrimidines; π–π stacking interactions
Year: 2015 PMID: 25995859 PMCID: PMC4420137 DOI: 10.1107/S2056989015006787
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title molecular salt, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1O1i | 0.86 | 1.86 | 2.6515(14) | 152 |
| N2H2 | 0.86 | 1.95 | 2.7935(17) | 166 |
| N2H2 | 0.86 | 2.01 | 2.8669(16) | 175 |
| N3H3O2 | 0.86 | 1.92 | 2.7689(14) | 169 |
| N6H6 | 0.86 | 2.25 | 2.9498(18) | 139 |
| N6H6 | 0.86 | 2.08 | 2.8201(15) | 143 |
Symmetry codes: (i) ; (ii) .
Figure 2A view of the supramolecular tunnel-like architecture built by N—H⋯O hydrogen bonds [dashed lines; see Table 1 ▸ for details; symmetry codes: (i) x, y + 1, z; (ii) −x + 1, −y + 1, −z + 1], in the crystal structure of the title molecular salt.
Figure 3A view along the b axis of the crystal packing of the title molecular salt. Hydrogen bonds (see Table 1 ▸ for details) and π–π interactions are shown as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | C4H7N4O+C7H7O3S |
|
| 298.33 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 30.8628(7), 6.5559(2), 13.1565(3) |
| () | 96.428(1) |
|
| 2645.27(12) |
|
| 8 |
| Radiation type | Mo |
| (mm1) | 0.27 |
| Crystal size (mm) | 0.30 0.20 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.925, 0.949 |
| No. of measured, independent and observed [ | 14972, 3580, 2986 |
|
| 0.022 |
| (sin /)max (1) | 0.687 |
| Refinement | |
|
| 0.037, 0.109, 1.06 |
| No. of reflections | 3580 |
| No. of parameters | 182 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.31, 0.25 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), PLATON (Spek, 2009 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C4H7N4O+·C7H7O3S− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3580 reflections |
| θ = 2.7–29.3° | |
| µ = 0.27 mm−1 | |
| β = 96.428 (1)° | Prism, colourless |
| 0.30 × 0.20 × 0.20 mm | |
| Bruker Kappa APEXII CCD diffractometer | 3580 independent reflections |
| Radiation source: fine-focus sealed tube | 2986 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 29.2°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 14972 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3580 reflections | (Δ/σ)max = 0.001 |
| 182 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| S1 | 0.37258 (1) | 0.33503 (6) | 0.60709 (3) | 0.0395 (1) | |
| O2 | 0.41787 (3) | 0.26937 (17) | 0.63677 (10) | 0.0469 (4) | |
| O3 | 0.36871 (4) | 0.55423 (17) | 0.61453 (11) | 0.0559 (4) | |
| O4 | 0.35526 (4) | 0.2530 (2) | 0.50899 (10) | 0.0594 (4) | |
| C7 | 0.34167 (4) | 0.2292 (2) | 0.69886 (12) | 0.0379 (4) | |
| C8 | 0.33328 (5) | 0.3414 (3) | 0.78333 (14) | 0.0508 (5) | |
| C9 | 0.30882 (6) | 0.2558 (4) | 0.85489 (15) | 0.0631 (7) | |
| C10 | 0.29210 (5) | 0.0608 (4) | 0.84233 (15) | 0.0611 (7) | |
| C11 | 0.30171 (6) | −0.0499 (3) | 0.75883 (16) | 0.0595 (6) | |
| C12 | 0.32634 (5) | 0.0315 (3) | 0.68668 (14) | 0.0477 (5) | |
| C13 | 0.26346 (7) | −0.0295 (5) | 0.9167 (2) | 0.0946 (12) | |
| O1 | 0.52384 (3) | 0.28686 (15) | 0.61202 (10) | 0.0461 (4) | |
| N1 | 0.50945 (3) | 0.88937 (16) | 0.62432 (8) | 0.0306 (3) | |
| N2 | 0.43613 (4) | 0.84071 (18) | 0.63472 (10) | 0.0382 (3) | |
| N3 | 0.48173 (3) | 0.56345 (16) | 0.62787 (9) | 0.0314 (3) | |
| N6 | 0.58157 (4) | 0.95420 (18) | 0.60830 (11) | 0.0424 (4) | |
| C2 | 0.47500 (4) | 0.76549 (19) | 0.62867 (9) | 0.0289 (3) | |
| C4 | 0.52230 (4) | 0.4758 (2) | 0.61702 (10) | 0.0321 (3) | |
| C5 | 0.55713 (4) | 0.6088 (2) | 0.61103 (11) | 0.0343 (4) | |
| C6 | 0.55075 (4) | 0.8158 (2) | 0.61406 (10) | 0.0308 (3) | |
| H8 | 0.34390 | 0.47360 | 0.79230 | 0.0610* | |
| H9 | 0.30360 | 0.33110 | 0.91220 | 0.0760* | |
| H11 | 0.29140 | −0.18290 | 0.75060 | 0.0710* | |
| H12 | 0.33250 | −0.04600 | 0.63080 | 0.0570* | |
| H13A | 0.23360 | 0.00590 | 0.89590 | 0.1420* | |
| H13B | 0.27210 | 0.02330 | 0.98400 | 0.1420* | |
| H13C | 0.26650 | −0.17530 | 0.91740 | 0.1420* | |
| H1 | 0.50570 | 1.01900 | 0.62810 | 0.0370* | |
| H2A | 0.41430 | 0.76020 | 0.63830 | 0.0460* | |
| H2B | 0.43230 | 0.97070 | 0.63510 | 0.0460* | |
| H3 | 0.46010 | 0.48390 | 0.63430 | 0.0380* | |
| H5 | 0.58480 | 0.55720 | 0.60500 | 0.0410* | |
| H6A | 0.60780 | 0.91650 | 0.60220 | 0.0510* | |
| H6B | 0.57530 | 1.08180 | 0.61070 | 0.0510* |
| S1 | 0.0285 (2) | 0.0340 (2) | 0.0570 (2) | −0.0021 (1) | 0.0095 (1) | −0.0001 (2) |
| O2 | 0.0284 (5) | 0.0346 (5) | 0.0788 (8) | −0.0014 (4) | 0.0105 (5) | 0.0016 (5) |
| O3 | 0.0434 (6) | 0.0332 (6) | 0.0928 (10) | 0.0018 (5) | 0.0154 (6) | 0.0087 (6) |
| O4 | 0.0459 (6) | 0.0783 (9) | 0.0554 (7) | −0.0116 (6) | 0.0117 (5) | −0.0091 (6) |
| C7 | 0.0265 (6) | 0.0356 (7) | 0.0519 (8) | −0.0021 (5) | 0.0053 (5) | 0.0004 (6) |
| C8 | 0.0409 (8) | 0.0524 (10) | 0.0600 (10) | −0.0048 (7) | 0.0094 (7) | −0.0104 (8) |
| C9 | 0.0469 (9) | 0.0889 (15) | 0.0554 (10) | −0.0014 (10) | 0.0140 (8) | −0.0057 (10) |
| C10 | 0.0336 (7) | 0.0877 (15) | 0.0618 (11) | −0.0043 (8) | 0.0039 (7) | 0.0239 (10) |
| C11 | 0.0458 (9) | 0.0518 (11) | 0.0791 (13) | −0.0138 (8) | −0.0004 (8) | 0.0191 (9) |
| C12 | 0.0411 (7) | 0.0379 (8) | 0.0638 (10) | −0.0056 (6) | 0.0047 (7) | −0.0005 (7) |
| C13 | 0.0533 (11) | 0.149 (3) | 0.0824 (15) | −0.0176 (14) | 0.0114 (10) | 0.0509 (16) |
| O1 | 0.0415 (5) | 0.0209 (5) | 0.0767 (8) | 0.0010 (4) | 0.0104 (5) | 0.0001 (5) |
| N1 | 0.0338 (5) | 0.0190 (5) | 0.0395 (6) | −0.0006 (4) | 0.0066 (4) | 0.0008 (4) |
| N2 | 0.0333 (5) | 0.0271 (6) | 0.0552 (7) | 0.0018 (4) | 0.0092 (5) | 0.0027 (5) |
| N3 | 0.0307 (5) | 0.0221 (5) | 0.0417 (6) | −0.0022 (4) | 0.0061 (4) | 0.0018 (4) |
| N6 | 0.0353 (6) | 0.0269 (6) | 0.0665 (8) | −0.0041 (5) | 0.0126 (6) | −0.0005 (5) |
| C2 | 0.0332 (6) | 0.0244 (6) | 0.0293 (6) | −0.0003 (5) | 0.0042 (4) | 0.0014 (4) |
| C4 | 0.0346 (6) | 0.0230 (6) | 0.0388 (6) | 0.0009 (5) | 0.0040 (5) | 0.0010 (5) |
| C5 | 0.0316 (6) | 0.0256 (6) | 0.0462 (7) | 0.0008 (5) | 0.0068 (5) | 0.0001 (5) |
| C6 | 0.0328 (6) | 0.0261 (6) | 0.0338 (6) | −0.0020 (5) | 0.0055 (5) | 0.0008 (5) |
| S1—O2 | 1.4728 (10) | C7—C12 | 1.383 (2) |
| S1—O3 | 1.4462 (12) | C7—C8 | 1.381 (2) |
| S1—O4 | 1.4444 (14) | C8—C9 | 1.389 (3) |
| S1—C7 | 1.7628 (15) | C9—C10 | 1.382 (4) |
| O1—C4 | 1.2416 (16) | C10—C13 | 1.511 (3) |
| N1—C6 | 1.3835 (16) | C10—C11 | 1.376 (3) |
| N1—C2 | 1.3442 (16) | C11—C12 | 1.388 (3) |
| N2—C2 | 1.3077 (18) | C8—H8 | 0.9300 |
| N3—C2 | 1.3410 (16) | C9—H9 | 0.9300 |
| N3—C4 | 1.3994 (16) | C11—H11 | 0.9300 |
| N6—C6 | 1.3228 (18) | C12—H12 | 0.9300 |
| N1—H1 | 0.8600 | C13—H13C | 0.9600 |
| N2—H2A | 0.8600 | C13—H13A | 0.9600 |
| N2—H2B | 0.8600 | C13—H13B | 0.9600 |
| N3—H3 | 0.8600 | C4—C5 | 1.3932 (18) |
| N6—H6B | 0.8600 | C5—C6 | 1.3725 (19) |
| N6—H6A | 0.8600 | C5—H5 | 0.9300 |
| S1···H2A | 3.0800 | C5···O4ii | 3.4031 (18) |
| S1···H2Bi | 3.0100 | C6···N2v | 3.2886 (19) |
| S1···H3 | 2.8600 | C6···O1iv | 3.1973 (16) |
| O1···C6i | 3.1973 (16) | C6···C2v | 3.5776 (18) |
| O1···N1i | 2.6515 (14) | C13···O4vi | 3.298 (3) |
| O1···N6i | 2.8201 (15) | C4···H1i | 3.0400 |
| O1···C2ii | 3.1894 (18) | C4···H6Bi | 3.0600 |
| O2···N3 | 2.7689 (14) | C7···H13Avii | 3.1000 |
| O2···N2i | 2.8669 (16) | C12···H13Biii | 3.0100 |
| O3···N2 | 2.7935 (17) | H1···H2B | 2.3000 |
| O4···C5ii | 3.4031 (18) | H1···H6B | 2.2200 |
| O4···N6ii | 2.9498 (18) | H1···C4iv | 3.0400 |
| O4···C13iii | 3.298 (3) | H1···O1iv | 1.8600 |
| O1···H6Bi | 2.0800 | H2A···H3 | 2.3000 |
| O1···H1i | 1.8600 | H2A···S1 | 3.0800 |
| O2···H3 | 1.9200 | H2A···O3 | 1.9500 |
| O2···H2Bi | 2.0100 | H2B···H1 | 2.3000 |
| O3···H12iv | 2.8700 | H2B···S1iv | 3.0100 |
| O3···H3 | 2.8400 | H2B···O2iv | 2.0100 |
| O3···H8 | 2.6000 | H3···S1 | 2.8600 |
| O3···H2A | 1.9500 | H3···H2A | 2.3000 |
| O4···H5ii | 2.8000 | H3···O2 | 1.9200 |
| O4···H13Ciii | 2.9100 | H3···O3 | 2.8400 |
| O4···H6Aii | 2.2500 | H5···O4ii | 2.8000 |
| O4···H12 | 2.6800 | H5···H8v | 2.5100 |
| N1···O1iv | 2.6515 (14) | H5···H6A | 2.4600 |
| N1···C2v | 3.3319 (16) | H6A···O4ii | 2.2500 |
| N2···O3 | 2.7935 (17) | H6A···H5 | 2.4600 |
| N2···O2iv | 2.8669 (16) | H6B···C4iv | 3.0600 |
| N2···C6v | 3.2886 (19) | H6B···H1 | 2.2200 |
| N3···C5ii | 3.4276 (18) | H6B···O1iv | 2.0800 |
| N3···O2 | 2.7689 (14) | H8···H5v | 2.5100 |
| N3···N3v | 3.2844 (17) | H8···O3 | 2.6000 |
| N3···C4v | 3.4212 (18) | H9···H13B | 2.4700 |
| N3···C4ii | 3.2207 (18) | H11···H13C | 2.4100 |
| N6···O1iv | 2.8201 (15) | H12···O4 | 2.6800 |
| N6···O4ii | 2.9498 (18) | H12···H13Biii | 2.5300 |
| C2···N1v | 3.3319 (16) | H12···O3i | 2.8700 |
| C2···C2v | 3.3868 (17) | H13A···C7viii | 3.1000 |
| C2···C6v | 3.5776 (18) | H13B···H9 | 2.4700 |
| C2···O1ii | 3.1894 (18) | H13B···C12vi | 3.0100 |
| C4···N3ii | 3.2207 (18) | H13B···H12vi | 2.5300 |
| C4···C4ii | 3.2446 (18) | H13C···H11 | 2.4100 |
| C4···N3v | 3.4212 (18) | H13C···O4vi | 2.9100 |
| C5···N3ii | 3.4276 (18) | ||
| O2—S1—O3 | 110.84 (7) | C7—C12—C11 | 119.19 (17) |
| O2—S1—O4 | 111.93 (7) | C9—C8—H8 | 120.00 |
| O2—S1—C7 | 105.89 (7) | C7—C8—H8 | 120.00 |
| O3—S1—O4 | 113.91 (8) | C10—C9—H9 | 119.00 |
| O3—S1—C7 | 106.83 (7) | C8—C9—H9 | 119.00 |
| O4—S1—C7 | 106.91 (7) | C10—C11—H11 | 119.00 |
| C2—N1—C6 | 122.36 (11) | C12—C11—H11 | 119.00 |
| C2—N3—C4 | 123.20 (10) | C11—C12—H12 | 120.00 |
| C6—N1—H1 | 119.00 | C7—C12—H12 | 120.00 |
| C2—N1—H1 | 119.00 | C10—C13—H13C | 109.00 |
| C2—N2—H2B | 120.00 | H13B—C13—H13C | 109.00 |
| H2A—N2—H2B | 120.00 | C10—C13—H13A | 109.00 |
| C2—N2—H2A | 120.00 | C10—C13—H13B | 109.00 |
| C4—N3—H3 | 118.00 | H13A—C13—H13C | 109.00 |
| C2—N3—H3 | 118.00 | H13A—C13—H13B | 110.00 |
| C6—N6—H6A | 120.00 | N1—C2—N3 | 118.20 (11) |
| H6A—N6—H6B | 120.00 | N1—C2—N2 | 120.67 (12) |
| C6—N6—H6B | 120.00 | N2—C2—N3 | 121.13 (11) |
| S1—C7—C12 | 119.60 (12) | N3—C4—C5 | 116.98 (11) |
| C8—C7—C12 | 119.99 (15) | O1—C4—C5 | 125.95 (12) |
| S1—C7—C8 | 120.41 (11) | O1—C4—N3 | 117.07 (11) |
| C7—C8—C9 | 119.68 (18) | C4—C5—C6 | 120.20 (12) |
| C8—C9—C10 | 121.11 (19) | N1—C6—N6 | 116.28 (12) |
| C11—C10—C13 | 120.3 (2) | N1—C6—C5 | 118.97 (11) |
| C9—C10—C13 | 121.5 (2) | N6—C6—C5 | 124.76 (12) |
| C9—C10—C11 | 118.19 (18) | C4—C5—H5 | 120.00 |
| C10—C11—C12 | 121.79 (19) | C6—C5—H5 | 120.00 |
| O2—S1—C7—C8 | 94.26 (13) | S1—C7—C12—C11 | −179.44 (13) |
| O2—S1—C7—C12 | −84.77 (13) | S1—C7—C8—C9 | 179.93 (13) |
| O3—S1—C7—C8 | −23.93 (14) | C12—C7—C8—C9 | −1.0 (2) |
| O3—S1—C7—C12 | 157.04 (12) | C8—C7—C12—C11 | 1.5 (2) |
| O4—S1—C7—C8 | −146.24 (13) | C7—C8—C9—C10 | −1.0 (3) |
| O4—S1—C7—C12 | 34.72 (14) | C8—C9—C10—C13 | −176.68 (19) |
| C6—N1—C2—N2 | −177.54 (12) | C8—C9—C10—C11 | 2.4 (3) |
| C6—N1—C2—N3 | 3.24 (18) | C13—C10—C11—C12 | 177.18 (19) |
| C2—N1—C6—N6 | 178.45 (12) | C9—C10—C11—C12 | −2.0 (3) |
| C2—N1—C6—C5 | −1.84 (19) | C10—C11—C12—C7 | 0.0 (3) |
| C2—N3—C4—O1 | −176.29 (13) | O1—C4—C5—C6 | 177.72 (14) |
| C2—N3—C4—C5 | 2.62 (19) | N3—C4—C5—C6 | −1.1 (2) |
| C4—N3—C2—N2 | 177.12 (12) | C4—C5—C6—N6 | −179.57 (14) |
| C4—N3—C2—N1 | −3.67 (18) | C4—C5—C6—N1 | 0.8 (2) |
| H··· | ||||
| N1—H1···O1iv | 0.86 | 1.86 | 2.6515 (14) | 152 |
| N2—H2 | 0.86 | 1.95 | 2.7935 (17) | 166 |
| N2—H2 | 0.86 | 2.01 | 2.8669 (16) | 175 |
| N3—H3···O2 | 0.86 | 1.92 | 2.7689 (14) | 169 |
| N6—H6 | 0.86 | 2.25 | 2.9498 (18) | 139 |
| N6—H6 | 0.86 | 2.08 | 2.8201 (15) | 143 |