| Literature DB >> 22064770 |
Sundaramoorthy Gomathi1, Packianathan Thomas Muthiah.
Abstract
In the title salt, C(6)H(10)N(3)O(2) (+)·C(7)H(7)O(3)S(-), the 2-amino-4,6-dimeth-oxy-pyrimidinium cation inter-acts with the sulfonate group of the p-toluene-sulfonate anion via a pair of N-H⋯O hydrogen bonds, forming a cyclic hydrogen-bonded R(2) (2)(8) motif, which in the crystal is linked by further intemolecular N-H⋯O hydrogen bonds, forming supra-molecular chains along the c axis. Furthermore, neighboring chains are inter-linked via weak C-H⋯O hydrogen bonds and C-H⋯π inter-actions, forming layers.Entities:
Year: 2011 PMID: 22064770 PMCID: PMC3201388 DOI: 10.1107/S160053681103755X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H10N3O2+·C7H7O3S− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 5264 reflections |
| θ = 1.7–31.9° | |
| µ = 0.24 mm−1 | |
| Prism, colourless | |
| 0.20 × 0.18 × 0.15 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 5264 independent reflections |
| Radiation source: fine-focus sealed tube | 4257 reflections with |
| graphite | |
| φ and ω scans | θmax = 31.9°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 35029 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 5264 reflections | Δρmax = 0.21 e Å−3 |
| 202 parameters | Δρmin = −0.23 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983) 2449, Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.01 (6) |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| O1 | 0.19507 (6) | 0.22303 (9) | 0.38465 (14) | 0.0511 (3) | |
| O2 | 0.11421 (6) | −0.06832 (9) | 0.04130 (13) | 0.0501 (3) | |
| N1 | 0.29344 (7) | 0.11712 (9) | 0.26107 (13) | 0.0402 (3) | |
| N2 | 0.40346 (7) | 0.01635 (11) | 0.14147 (18) | 0.0496 (4) | |
| N3 | 0.25982 (7) | −0.03173 (10) | 0.08987 (14) | 0.0404 (3) | |
| C2 | 0.31858 (9) | 0.03320 (10) | 0.16420 (17) | 0.0390 (3) | |
| C4 | 0.17567 (9) | −0.00833 (12) | 0.11384 (17) | 0.0403 (4) | |
| C5 | 0.14437 (8) | 0.07733 (12) | 0.21022 (17) | 0.0428 (3) | |
| C6 | 0.20693 (8) | 0.13947 (11) | 0.28454 (15) | 0.0400 (4) | |
| C7 | 0.14081 (10) | −0.16405 (13) | −0.0479 (2) | 0.0540 (4) | |
| C8 | 0.10582 (10) | 0.25880 (15) | 0.4142 (2) | 0.0563 (5) | |
| S1 | 0.50030 (2) | 0.23323 (3) | 0.42863 (6) | 0.0428 (1) | |
| O3 | 0.52077 (8) | 0.12267 (9) | 0.37468 (16) | 0.0570 (4) | |
| O4 | 0.41176 (7) | 0.26565 (10) | 0.3831 (2) | 0.0647 (5) | |
| O5 | 0.51823 (10) | 0.24747 (13) | 0.59809 (18) | 0.0739 (5) | |
| C9 | 0.57224 (9) | 0.32344 (11) | 0.32795 (17) | 0.0422 (3) | |
| C10 | 0.66162 (10) | 0.30482 (15) | 0.3425 (2) | 0.0591 (5) | |
| C11 | 0.72049 (13) | 0.37635 (17) | 0.2707 (3) | 0.0705 (6) | |
| C12 | 0.69171 (15) | 0.46724 (14) | 0.1854 (2) | 0.0648 (6) | |
| C13 | 0.60373 (15) | 0.48291 (15) | 0.1698 (3) | 0.0698 (6) | |
| C14 | 0.54237 (12) | 0.41230 (13) | 0.2414 (2) | 0.0601 (5) | |
| C15 | 0.7578 (2) | 0.54823 (18) | 0.1173 (3) | 0.0919 (9) | |
| H1 | 0.33270 | 0.15660 | 0.30810 | 0.0480* | |
| H2A | 0.42080 | −0.03590 | 0.07950 | 0.0600* | |
| H2B | 0.44140 | 0.05760 | 0.18870 | 0.0600* | |
| H5 | 0.08460 | 0.09110 | 0.22280 | 0.0510* | |
| H7A | 0.16740 | −0.21650 | 0.02330 | 0.0810* | |
| H7B | 0.18250 | −0.14290 | −0.12860 | 0.0810* | |
| H7C | 0.09030 | −0.19660 | −0.09800 | 0.0810* | |
| H8A | 0.07310 | 0.19980 | 0.46210 | 0.0840* | |
| H8B | 0.07880 | 0.27950 | 0.31480 | 0.0840* | |
| H8C | 0.10640 | 0.32090 | 0.48540 | 0.0840* | |
| H10 | 0.68200 | 0.24450 | 0.40020 | 0.0710* | |
| H11 | 0.78050 | 0.36310 | 0.27980 | 0.0850* | |
| H13 | 0.58360 | 0.54230 | 0.10970 | 0.0840* | |
| H14 | 0.48240 | 0.42530 | 0.23060 | 0.0720* | |
| H15A | 0.72930 | 0.59500 | 0.04060 | 0.1380* | |
| H15B | 0.80450 | 0.50860 | 0.06570 | 0.1380* | |
| H15C | 0.78160 | 0.59230 | 0.20230 | 0.1380* |
| O1 | 0.0369 (5) | 0.0605 (6) | 0.0559 (6) | 0.0002 (4) | −0.0028 (4) | −0.0136 (5) |
| O2 | 0.0340 (4) | 0.0573 (6) | 0.0589 (6) | −0.0034 (4) | −0.0075 (4) | −0.0086 (5) |
| N1 | 0.0323 (5) | 0.0477 (6) | 0.0407 (5) | −0.0051 (4) | −0.0035 (4) | 0.0014 (4) |
| N2 | 0.0311 (5) | 0.0558 (7) | 0.0619 (8) | −0.0011 (5) | −0.0030 (5) | −0.0073 (6) |
| N3 | 0.0325 (5) | 0.0456 (5) | 0.0431 (5) | −0.0023 (4) | −0.0030 (4) | 0.0026 (4) |
| C2 | 0.0337 (5) | 0.0427 (6) | 0.0405 (6) | −0.0006 (4) | −0.0012 (5) | 0.0067 (5) |
| C4 | 0.0327 (6) | 0.0474 (7) | 0.0409 (6) | −0.0038 (5) | −0.0056 (5) | 0.0060 (5) |
| C5 | 0.0299 (5) | 0.0512 (7) | 0.0473 (6) | −0.0002 (5) | −0.0042 (5) | 0.0005 (6) |
| C6 | 0.0363 (6) | 0.0466 (7) | 0.0370 (6) | −0.0005 (5) | −0.0020 (5) | 0.0043 (5) |
| C7 | 0.0480 (7) | 0.0532 (7) | 0.0609 (9) | −0.0052 (6) | −0.0075 (7) | −0.0063 (7) |
| C8 | 0.0427 (7) | 0.0624 (9) | 0.0638 (9) | 0.0085 (6) | −0.0062 (7) | −0.0131 (8) |
| S1 | 0.0333 (1) | 0.0475 (2) | 0.0477 (2) | −0.0056 (1) | −0.0002 (1) | −0.0003 (2) |
| O3 | 0.0512 (5) | 0.0429 (5) | 0.0770 (8) | −0.0034 (4) | −0.0008 (5) | 0.0019 (5) |
| O4 | 0.0348 (5) | 0.0570 (7) | 0.1024 (11) | −0.0026 (4) | −0.0073 (6) | −0.0052 (6) |
| O5 | 0.0665 (8) | 0.1106 (12) | 0.0446 (6) | −0.0298 (7) | 0.0061 (6) | 0.0007 (6) |
| C9 | 0.0424 (6) | 0.0414 (6) | 0.0427 (6) | −0.0060 (5) | −0.0025 (5) | −0.0021 (5) |
| C10 | 0.0417 (7) | 0.0613 (9) | 0.0742 (11) | −0.0056 (6) | 0.0011 (7) | 0.0173 (9) |
| C11 | 0.0507 (9) | 0.0794 (12) | 0.0814 (12) | −0.0191 (8) | 0.0087 (9) | 0.0105 (10) |
| C12 | 0.0847 (13) | 0.0603 (9) | 0.0493 (8) | −0.0265 (8) | 0.0092 (8) | 0.0011 (8) |
| C13 | 0.0933 (14) | 0.0511 (9) | 0.0649 (10) | −0.0095 (8) | −0.0067 (10) | 0.0150 (8) |
| C14 | 0.0591 (10) | 0.0530 (8) | 0.0682 (10) | 0.0010 (7) | −0.0086 (8) | 0.0096 (8) |
| C15 | 0.123 (2) | 0.0774 (13) | 0.0754 (13) | −0.0454 (14) | 0.0247 (14) | 0.0022 (11) |
| S1—O4 | 1.4538 (12) | C7—H7B | 0.9600 |
| S1—O5 | 1.4513 (16) | C7—H7C | 0.9600 |
| S1—C9 | 1.7618 (14) | C8—H8B | 0.9600 |
| S1—O3 | 1.4498 (12) | C8—H8C | 0.9600 |
| O1—C6 | 1.3269 (17) | C8—H8A | 0.9600 |
| O1—C8 | 1.4466 (18) | C9—C10 | 1.384 (2) |
| O2—C7 | 1.4386 (19) | C9—C14 | 1.376 (2) |
| O2—C4 | 1.3310 (17) | C10—C11 | 1.384 (3) |
| N1—C2 | 1.3560 (17) | C11—C12 | 1.385 (3) |
| N1—C6 | 1.3579 (16) | C12—C13 | 1.358 (3) |
| N2—C2 | 1.3210 (17) | C12—C15 | 1.517 (3) |
| N3—C4 | 1.3264 (17) | C13—C14 | 1.401 (3) |
| N3—C2 | 1.3438 (18) | C10—H10 | 0.9300 |
| N1—H1 | 0.8600 | C11—H11 | 0.9300 |
| N2—H2B | 0.8600 | C13—H13 | 0.9300 |
| N2—H2A | 0.8600 | C14—H14 | 0.9300 |
| C4—C5 | 1.399 (2) | C15—H15A | 0.9600 |
| C5—C6 | 1.3638 (18) | C15—H15B | 0.9600 |
| C5—H5 | 0.9300 | C15—H15C | 0.9600 |
| C7—H7A | 0.9600 | ||
| S1···H2B | 3.0600 | C10···H7Aiv | 2.8700 |
| S1···H2Ai | 2.9600 | C10···H7Bi | 3.0900 |
| S1···H1 | 2.8900 | C11···H7Aiv | 2.9500 |
| O1···C2ii | 3.2870 (17) | C11···H15Bix | 2.9600 |
| O2···O3iii | 3.1944 (17) | C15···H8Cx | 2.8300 |
| O3···C5iv | 3.3642 (18) | H1···O4 | 1.9000 |
| O3···N2 | 2.9398 (18) | H1···S1 | 2.8900 |
| O3···N2i | 3.0233 (19) | H1···H2B | 2.2700 |
| O3···O2iv | 3.1944 (17) | H2A···O5vii | 2.7400 |
| O4···N1 | 2.7441 (16) | H2A···O3vii | 2.2000 |
| O5···C5ii | 3.356 (2) | H2A···S1vii | 2.9600 |
| O5···C8ii | 3.248 (2) | H2B···O2iv | 2.9100 |
| O1···H15Av | 2.8100 | H2B···O3 | 2.1200 |
| O2···H2Biii | 2.9100 | H2B···H1 | 2.2700 |
| O3···H10 | 2.8700 | H2B···S1 | 3.0600 |
| O3···H2B | 2.1200 | H2B···H8Aviii | 2.5700 |
| O3···H2Ai | 2.2000 | H5···C8 | 2.6100 |
| O4···H14 | 2.5600 | H5···H8A | 2.4000 |
| O4···H1 | 1.9000 | H5···H8B | 2.4100 |
| O5···H5ii | 2.6700 | H5···O5viii | 2.6700 |
| O5···H8Bii | 2.3700 | H7A···N3 | 2.7100 |
| O5···H2Ai | 2.7400 | H7A···C11iii | 2.9500 |
| O5···H7Cvi | 2.8300 | H7A···C10iii | 2.8700 |
| N1···O4 | 2.7441 (16) | H7A···H10vii | 2.5300 |
| N1···C4ii | 3.3492 (18) | H7B···C10vii | 3.0900 |
| N2···O3vii | 3.0233 (19) | H7B···N3 | 2.5600 |
| N2···O3 | 2.9398 (18) | H7B···H10vii | 2.4100 |
| N3···C6viii | 3.3281 (17) | H7B···N3viii | 2.8500 |
| N2···H8Aviii | 2.7100 | H7B···C2viii | 2.7500 |
| N3···H7B | 2.5600 | H7C···H8Axiii | 2.5400 |
| N3···H7A | 2.7100 | H7C···O5xiv | 2.8300 |
| N3···H7Bii | 2.8500 | H7C···C8xiii | 3.0800 |
| C2···O1viii | 3.2870 (17) | H8A···C5 | 2.7900 |
| C2···C7ii | 3.449 (2) | H8A···H5 | 2.4000 |
| C2···C6viii | 3.4445 (19) | H8A···H7Cxii | 2.5400 |
| C4···N1viii | 3.3492 (18) | H8A···N2ii | 2.7100 |
| C5···O5viii | 3.356 (2) | H8A···H2Bii | 2.5700 |
| C5···O3iii | 3.3642 (18) | H8B···H5 | 2.4100 |
| C6···C2ii | 3.4445 (19) | H8B···O5viii | 2.3700 |
| C6···N3ii | 3.3281 (17) | H8B···C5 | 2.7900 |
| C7···C2viii | 3.449 (2) | H8C···H15Bv | 2.5600 |
| C7···C10vii | 3.577 (2) | H8C···C15v | 2.8300 |
| C8···C15v | 3.559 (3) | H10···O3 | 2.8700 |
| C8···O5viii | 3.248 (2) | H10···C7i | 2.9000 |
| C10···C7i | 3.577 (2) | H10···H7Ai | 2.5300 |
| C11···C15ix | 3.583 (3) | H10···H7Bi | 2.4100 |
| C15···C8x | 3.559 (3) | H11···H15B | 2.5400 |
| C15···C11xi | 3.583 (3) | H11···C7i | 3.0600 |
| C2···H7Bii | 2.7500 | H13···H15A | 2.3800 |
| C5···H8A | 2.7900 | H14···O4 | 2.5600 |
| C5···H8B | 2.7900 | H15A···H13 | 2.3800 |
| C7···H11vii | 3.0600 | H15A···O1x | 2.8100 |
| C7···H10vii | 2.9000 | H15B···H11 | 2.5400 |
| C8···H7Cxii | 3.0800 | H15B···H8Cx | 2.5600 |
| C8···H5 | 2.6100 | H15B···C11xi | 2.9600 |
| O5—S1—C9 | 105.93 (8) | H7B—C7—H7C | 109.00 |
| O3—S1—C9 | 107.10 (7) | H8B—C8—H8C | 109.00 |
| O3—S1—O4 | 111.62 (8) | O1—C8—H8A | 109.00 |
| O3—S1—O5 | 111.89 (9) | O1—C8—H8B | 109.00 |
| O4—S1—O5 | 113.38 (9) | O1—C8—H8C | 109.00 |
| O4—S1—C9 | 106.40 (7) | H8A—C8—H8B | 110.00 |
| C6—O1—C8 | 117.69 (11) | H8A—C8—H8C | 109.00 |
| C4—O2—C7 | 118.70 (11) | S1—C9—C10 | 117.83 (11) |
| C2—N1—C6 | 120.64 (11) | S1—C9—C14 | 122.21 (12) |
| C2—N3—C4 | 116.52 (12) | C10—C9—C14 | 119.92 (14) |
| C6—N1—H1 | 120.00 | C9—C10—C11 | 119.68 (16) |
| C2—N1—H1 | 120.00 | C10—C11—C12 | 121.23 (18) |
| C2—N2—H2B | 120.00 | C11—C12—C13 | 118.21 (18) |
| C2—N2—H2A | 120.00 | C11—C12—C15 | 120.0 (2) |
| H2A—N2—H2B | 120.00 | C13—C12—C15 | 121.76 (18) |
| N2—C2—N3 | 119.53 (12) | C12—C13—C14 | 121.99 (18) |
| N1—C2—N2 | 118.54 (12) | C9—C14—C13 | 118.94 (17) |
| N1—C2—N3 | 121.92 (12) | C9—C10—H10 | 120.00 |
| O2—C4—N3 | 119.47 (13) | C11—C10—H10 | 120.00 |
| N3—C4—C5 | 125.08 (13) | C10—C11—H11 | 119.00 |
| O2—C4—C5 | 115.45 (12) | C12—C11—H11 | 119.00 |
| C4—C5—C6 | 115.83 (12) | C12—C13—H13 | 119.00 |
| O1—C6—N1 | 112.06 (11) | C14—C13—H13 | 119.00 |
| N1—C6—C5 | 120.00 (12) | C9—C14—H14 | 121.00 |
| O1—C6—C5 | 127.94 (12) | C13—C14—H14 | 121.00 |
| C4—C5—H5 | 122.00 | C12—C15—H15A | 110.00 |
| C6—C5—H5 | 122.00 | C12—C15—H15B | 109.00 |
| H7A—C7—H7B | 109.00 | C12—C15—H15C | 110.00 |
| H7A—C7—H7C | 109.00 | H15A—C15—H15B | 109.00 |
| O2—C7—H7A | 109.00 | H15A—C15—H15C | 110.00 |
| O2—C7—H7B | 109.00 | H15B—C15—H15C | 109.00 |
| O2—C7—H7C | 109.00 | ||
| O4—S1—C9—C10 | −175.52 (13) | C4—N3—C2—N2 | −177.98 (13) |
| O3—S1—C9—C10 | −56.03 (14) | C2—N3—C4—O2 | 178.80 (12) |
| O3—S1—C9—C14 | 126.16 (13) | O2—C4—C5—C6 | −179.77 (12) |
| O5—S1—C9—C14 | −114.27 (14) | N3—C4—C5—C6 | −0.5 (2) |
| O4—S1—C9—C14 | 6.66 (15) | C4—C5—C6—N1 | 0.8 (2) |
| O5—S1—C9—C10 | 63.54 (14) | C4—C5—C6—O1 | −178.16 (13) |
| C8—O1—C6—N1 | 177.13 (12) | S1—C9—C10—C11 | −177.39 (15) |
| C8—O1—C6—C5 | −3.9 (2) | C14—C9—C10—C11 | 0.5 (3) |
| C7—O2—C4—N3 | 6.4 (2) | S1—C9—C14—C13 | 177.50 (14) |
| C7—O2—C4—C5 | −174.33 (13) | C10—C9—C14—C13 | −0.3 (2) |
| C2—N1—C6—C5 | −0.07 (18) | C9—C10—C11—C12 | 0.6 (3) |
| C2—N1—C6—O1 | 179.01 (12) | C10—C11—C12—C13 | −1.9 (3) |
| C6—N1—C2—N2 | 178.19 (13) | C10—C11—C12—C15 | 175.99 (19) |
| C6—N1—C2—N3 | −1.0 (2) | C11—C12—C13—C14 | 2.1 (3) |
| C4—N3—C2—N1 | 1.2 (2) | C15—C12—C13—C14 | −175.73 (19) |
| C2—N3—C4—C5 | −0.4 (2) | C12—C13—C14—C9 | −1.1 (3) |
| Cg is the centroid of the C9–C14 ring. |
| H··· | ||||
| N1—H1···O4 | 0.86 | 1.90 | 2.7441 (16) | 169 |
| N2—H2A···O3vii | 0.86 | 2.20 | 3.0233 (19) | 161 |
| N2—H2B···O3 | 0.86 | 2.12 | 2.9398 (18) | 159 |
| C8—H8B···O5viii | 0.96 | 2.37 | 3.248 (2) | 152 |
| C7—H7A···Cgiii | 0.96 | 2.96 | 3.7815 (18) | 145 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C9–C14 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O4 | 0.86 | 1.90 | 2.7441 (16) | 169 |
| N2—H2 | 0.86 | 2.20 | 3.0233 (19) | 161 |
| N2—H2 | 0.86 | 2.12 | 2.9398 (18) | 159 |
| C8—H8 | 0.96 | 2.37 | 3.248 (2) | 152 |
| C7—H7 | 0.96 | 2.96 | 3.7815 (18) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) .