Literature DB >> 25977766

Time-resolved gene expression profiling during reprogramming of C/EBPα-pulsed B cells into iPS cells.

Bruno Di Stefano1, Samuel Collombet2, Thomas Graf3.   

Abstract

The reprogramming of somatic cells to induced pluripotent stem cells (iPSCs) is lengthy and inefficient. The development of a reprogramming system that allows rapid and synchronous reprogramming to pluripotency is imperative for understanding the mechanism of iPSC formation and for future therapeutic applications. We have recently reported that a short expression in mouse primary B cells of the transcription factor C/EBPα before the induction of pluripotency factors increases the iPSC reprogramming efficiency >100-fold, involving 95% of the cells within a week. Here we present a dataset containing the time course of gene expression during this process as determined by microarray and RNA-seq techniques.

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Year:  2014        PMID: 25977766      PMCID: PMC4322579          DOI: 10.1038/sdata.2014.8

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  26 in total

1.  Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.

Authors:  Simon Anders; Davis J McCarthy; Yunshun Chen; Michal Okoniewski; Gordon K Smyth; Wolfgang Huber; Mark D Robinson
Journal:  Nat Protoc       Date:  2013-08-22       Impact factor: 13.491

2.  Isolation and transplantation of hematopoietic stem cells (HSCs).

Authors:  Cristina Lo Celso; David Scadden
Journal:  J Vis Exp       Date:  2007-02-25       Impact factor: 1.355

3.  A robust and highly efficient immune cell reprogramming system.

Authors:  Lars H Bussmann; Alexis Schubert; Thien Phong Vu Manh; Luisa De Andres; Sabrina C Desbordes; Maribel Parra; Timo Zimmermann; Francesca Rapino; Javier Rodriguez-Ubreva; Esteban Ballestar; Thomas Graf
Journal:  Cell Stem Cell       Date:  2009-11-06       Impact factor: 24.633

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells.

Authors:  Bruno Di Stefano; Jose Luis Sardina; Chris van Oevelen; Samuel Collombet; Eric M Kallin; Guillermo P Vicent; Jun Lu; Denis Thieffry; Miguel Beato; Thomas Graf
Journal:  Nature       Date:  2013-12-15       Impact factor: 49.962

6.  CCAAT/enhancer binding protein alpha (C/EBP(alpha))-induced transdifferentiation of pre-B cells into macrophages involves no overt retrodifferentiation.

Authors:  Alessandro Di Tullio; Thien Phong Vu Manh; Alexis Schubert; Giancarlo Castellano; Robert Månsson; Thomas Graf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

7.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

8.  A microRNA-based system for selecting and maintaining the pluripotent state in human induced pluripotent stem cells.

Authors:  Bruno Di Stefano; Sara Martina Maffioletti; Bernhard Gentner; Federica Ungaro; Giulia Schira; Luigi Naldini; Vania Broccoli
Journal:  Stem Cells       Date:  2011-11       Impact factor: 6.277

Review 9.  Mechanisms and models of somatic cell reprogramming.

Authors:  Yosef Buganim; Dina A Faddah; Rudolf Jaenisch
Journal:  Nat Rev Genet       Date:  2013-06       Impact factor: 53.242

10.  Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency.

Authors:  Jenny Hansson; Mahmoud Reza Rafiee; Sonja Reiland; Jose M Polo; Julian Gehring; Satoshi Okawa; Wolfgang Huber; Konrad Hochedlinger; Jeroen Krijgsveld
Journal:  Cell Rep       Date:  2012-12-27       Impact factor: 9.423

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  2 in total

1.  Cellular reprogramming dynamics follow a simple one-dimensional reaction coordinate.

Authors:  Sai Teja Pusuluri; Alex H Lang; Pankaj Mehta; Horacio Castillo
Journal:  Phys Biol       Date:  2017-10-04       Impact factor: 2.583

2.  Cellular reprogramming dynamics follow a simple 1D reaction coordinate.

Authors:  Sai Teja Pusuluri; Alex H Lang; Pankaj Mehta; Horacio E Castillo
Journal:  Phys Biol       Date:  2017-12-06       Impact factor: 2.583

  2 in total

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