Literature DB >> 25964458

Vaccinology in the era of high-throughput biology.

Helder I Nakaya1, Bali Pulendran2.   

Abstract

Vaccination has been tremendously successful saving lives and preventing infections. However, the development of vaccines against global pandemics such as HIV, malaria and tuberculosis has been obstructed by several challenges. A major challenge is the lack of knowledge about the correlates and mechanisms of protective immunity. Recent advances in the application of systems biological approaches to analyse immune responses to vaccination in humans are beginning to yield new insights about mechanisms of vaccine immunity, and to define molecular signatures, induced rapidly after vaccination, that correlate with and predict vaccine induced immunity. Here, we review these advances and discuss the potential of this systems vaccinology approach in defining novel correlates of protection in clinical trials, and in infection-induced 'experimental challenge models' in humans.
© 2015 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  high-throughput biology; immunity; systems biology; vaccinology

Mesh:

Substances:

Year:  2015        PMID: 25964458      PMCID: PMC4527391          DOI: 10.1098/rstb.2014.0146

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  75 in total

1.  Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures.

Authors:  Helder I Nakaya; Thomas Hagan; Sai S Duraisingham; Eva K Lee; Marcin Kwissa; Nadine Rouphael; Daniela Frasca; Merril Gersten; Aneesh K Mehta; Renaud Gaujoux; Gui-Mei Li; Shakti Gupta; Rafi Ahmed; Mark J Mulligan; Shai Shen-Orr; Bonnie B Blomberg; Shankar Subramaniam; Bali Pulendran
Journal:  Immunity       Date:  2015-12-15       Impact factor: 31.745

Review 2.  Systems biology of vaccination in the elderly.

Authors:  Sai S Duraisingham; Nadine Rouphael; Mary M Cavanagh; Helder I Nakaya; Jorg J Goronzy; Bali Pulendran
Journal:  Curr Top Microbiol Immunol       Date:  2013       Impact factor: 4.291

3.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

4.  Oil-in-water emulsion adjuvant with influenza vaccine in young children.

Authors:  Timo Vesikari; Markus Knuf; Peter Wutzler; Aino Karvonen; Dorothee Kieninger-Baum; Heinz-Josef Schmitt; Frank Baehner; Astrid Borkowski; Theodore F Tsai; Ralf Clemens
Journal:  N Engl J Med       Date:  2011-10-13       Impact factor: 91.245

Review 5.  Systems vaccinology.

Authors:  Bali Pulendran; Shuzhao Li; Helder I Nakaya
Journal:  Immunity       Date:  2010-10-29       Impact factor: 31.745

6.  A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus.

Authors:  Damien Chaussabel; Charles Quinn; Jing Shen; Pinakeen Patel; Casey Glaser; Nicole Baldwin; Dorothee Stichweh; Derek Blankenship; Lei Li; Indira Munagala; Lynda Bennett; Florence Allantaz; Asuncion Mejias; Monica Ardura; Ellen Kaizer; Laurence Monnet; Windy Allman; Henry Randall; Diane Johnson; Aimee Lanier; Marilynn Punaro; Knut M Wittkowski; Perrin White; Joseph Fay; Goran Klintmalm; Octavio Ramilo; A Karolina Palucka; Jacques Banchereau; Virginia Pascual
Journal:  Immunity       Date:  2008-07-18       Impact factor: 31.745

7.  An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.

Authors:  Matthew P R Berry; Christine M Graham; Finlay W McNab; Zhaohui Xu; Susannah A A Bloch; Tolu Oni; Katalin A Wilkinson; Romain Banchereau; Jason Skinner; Robert J Wilkinson; Charles Quinn; Derek Blankenship; Ranju Dhawan; John J Cush; Asuncion Mejias; Octavio Ramilo; Onn M Kon; Virginia Pascual; Jacques Banchereau; Damien Chaussabel; Anne O'Garra
Journal:  Nature       Date:  2010-08-19       Impact factor: 49.962

8.  From genomics to chemical genomics: new developments in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  PID: the Pathway Interaction Database.

Authors:  Carl F Schaefer; Kira Anthony; Shiva Krupa; Jeffrey Buchoff; Matthew Day; Timo Hannay; Kenneth H Buetow
Journal:  Nucleic Acids Res       Date:  2008-10-02       Impact factor: 16.971

10.  An outpatient, ambulant-design, controlled human infection model using escalating doses of Salmonella Typhi challenge delivered in sodium bicarbonate solution.

Authors:  Claire S Waddington; Thomas C Darton; Claire Jones; Kathryn Haworth; Anna Peters; Tessa John; Ben A V Thompson; Simon A Kerridge; Robert A Kingsley; Liqing Zhou; Kathryn E Holt; Ly-Mee Yu; Stephen Lockhart; Jeremy J Farrar; Marcelo B Sztein; Gordon Dougan; Brian Angus; Myron M Levine; Andrew J Pollard
Journal:  Clin Infect Dis       Date:  2014-02-10       Impact factor: 9.079

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  26 in total

Review 1.  Improving vaccine trials in infectious disease emergencies.

Authors:  Marc Lipsitch; Nir Eyal
Journal:  Science       Date:  2017-07-14       Impact factor: 47.728

Review 2.  The role of systems biology approaches in determining molecular signatures for the development of more effective vaccines.

Authors:  Abdulmohammad Pezeshki; Inna G Ovsyannikova; Brett A McKinney; Gregory A Poland; Richard B Kennedy
Journal:  Expert Rev Vaccines       Date:  2019-02-11       Impact factor: 5.217

3.  Biological challenges to effective vaccines in the developing world.

Authors:  Nicholas C Grassly; Gagandeep Kang; Beate Kampmann
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-06-19       Impact factor: 6.237

Review 4.  Harnessing the beneficial heterologous effects of vaccination.

Authors:  Helen S Goodridge; S Sohail Ahmed; Nigel Curtis; Tobias R Kollmann; Ofer Levy; Mihai G Netea; Andrew J Pollard; Reinout van Crevel; Christopher B Wilson
Journal:  Nat Rev Immunol       Date:  2016-05-09       Impact factor: 53.106

5.  Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data.

Authors:  Matthew C Altman; Darawan Rinchai; Nicole Baldwin; Mohammed Toufiq; Elizabeth Whalen; Mathieu Garand; Basirudeen Syed Ahamed Kabeer; Mohamed Alfaki; Scott R Presnell; Prasong Khaenam; Aaron Ayllón-Benítez; Fleur Mougin; Patricia Thébault; Laurent Chiche; Noemie Jourde-Chiche; J Theodore Phillips; Goran Klintmalm; Anne O'Garra; Matthew Berry; Chloe Bloom; Robert J Wilkinson; Christine M Graham; Marc Lipman; Ganjana Lertmemongkolchai; Davide Bedognetti; Rodolphe Thiebaut; Farrah Kheradmand; Asuncion Mejias; Octavio Ramilo; Karolina Palucka; Virginia Pascual; Jacques Banchereau; Damien Chaussabel
Journal:  Nat Commun       Date:  2021-07-19       Impact factor: 14.919

Review 6.  Systems Biology-Based Platforms to Accelerate Research of Emerging Infectious Diseases.

Authors:  Soo Jin Oh; Young Ki Choi; Ok Sarah Shin
Journal:  Yonsei Med J       Date:  2018-03       Impact factor: 2.759

Review 7.  Metazoan Parasite Vaccines: Present Status and Future Prospects.

Authors:  Christian Stutzer; Sabine A Richards; Mariette Ferreira; Samantha Baron; Christine Maritz-Olivier
Journal:  Front Cell Infect Microbiol       Date:  2018-03-13       Impact factor: 5.293

Review 8.  Vaccinology in the third millennium: scientific and social challenges.

Authors:  Gregory A Poland; Jennifer A Whitaker; Caroline M Poland; Inna G Ovsyannikova; Richard B Kennedy
Journal:  Curr Opin Virol       Date:  2016-03-30       Impact factor: 7.090

Review 9.  A review of clinical models for the evaluation of human TB vaccines.

Authors:  Matthew K O'Shea; Helen McShane
Journal:  Hum Vaccin Immunother       Date:  2016-01-25       Impact factor: 3.452

Review 10.  Can follicular helper T cells be targeted to improve vaccine efficacy?

Authors:  Michelle A Linterman; Danika L Hill
Journal:  F1000Res       Date:  2016-01-20
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