Literature DB >> 25963601

An inverse problem formulation for parameter estimation of a reaction-diffusion model of low grade gliomas.

Amir Gholami1, Andreas Mang2, George Biros3.   

Abstract

We present a numerical scheme for solving a parameter estimation problem for a model of low-grade glioma growth. Our goal is to estimate the spatial distribution of tumor concentration, as well as the magnitude of anisotropic tumor diffusion. We use a constrained optimization formulation with a reaction-diffusion model that results in a system of nonlinear partial differential equations. In our formulation, we estimate the parameters using partially observed, noisy tumor concentration data at two different time instances, along with white matter fiber directions derived from diffusion tensor imaging. The optimization problem is solved with a Gauss-Newton reduced space algorithm. We present the formulation and outline the numerical algorithms for solving the resulting equations. We test the method using a synthetic dataset and compute the reconstruction error for different noise levels and detection thresholds for monofocal and multifocal test cases.

Entities:  

Keywords:  Glioblastoma multiforme; Glioma; Inverse problems; Parameter estimation; Tumor growth

Mesh:

Year:  2015        PMID: 25963601      PMCID: PMC4643433          DOI: 10.1007/s00285-015-0888-x

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  41 in total

1.  Effects of cell volume fraction changes on apparent diffusion in human cells.

Authors:  A W Anderson; J Xie; J Pizzonia; R A Bronen; D D Spencer; J C Gore
Journal:  Magn Reson Imaging       Date:  2000-07       Impact factor: 2.546

2.  Isolation and characterization of human malignant glioma cells from histologically normal brain.

Authors:  D L Silbergeld; M R Chicoine
Journal:  J Neurosurg       Date:  1997-03       Impact factor: 5.115

3.  Image guided personalization of reaction-diffusion type tumor growth models using modified anisotropic eikonal equations.

Authors:  Ender Konukoglu; Olivier Clatz; Bjoern H Menze; Bram Stieltjes; Marc-André Weber; Emmanuel Mandonnet; Hervé Delingette; Nicholas Ayache
Journal:  IEEE Trans Med Imaging       Date:  2009-07-14       Impact factor: 10.048

4.  Finite element modeling of brain tumor mass-effect from 3D medical images.

Authors:  Ashraf Mohamed; Christos Davatzikos
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Survival in glioblastoma: historical perspective.

Authors:  M Salcman
Journal:  Neurosurgery       Date:  1980-11       Impact factor: 4.654

6.  A mechanically coupled reaction-diffusion model for predicting the response of breast tumors to neoadjuvant chemotherapy.

Authors:  Jared A Weis; Michael I Miga; Lori R Arlinghaus; Xia Li; A Bapsi Chakravarthy; Vandana Abramson; Jaime Farley; Thomas E Yankeelov
Journal:  Phys Med Biol       Date:  2013-08-06       Impact factor: 3.609

7.  Detection of tumour invasion into the pyramidal tract in glioma patients with sensorimotor deficits by correlation of (18)F-fluoroethyl-L: -tyrosine PET and magnetic resonance diffusion tensor imaging.

Authors:  Andreas Stadlbauer; Esther Pölking; Olaf Prante; Christopher Nimsky; Michael Buchfelder; Torsten Kuwert; Rainer Linke; Marc Doelken; Oliver Ganslandt
Journal:  Acta Neurochir (Wien)       Date:  2009-05-26       Impact factor: 2.216

8.  Biocomputing: numerical simulation of glioblastoma growth using diffusion tensor imaging.

Authors:  Pierre-Yves Bondiau; Olivier Clatz; Maxime Sermesant; Pierre-Yves Marcy; Herve Delingette; Marc Frenay; Nicholas Ayache
Journal:  Phys Med Biol       Date:  2008-01-15       Impact factor: 3.609

9.  Results of irradiation in patients with high-grade gliomas evaluated by magnetic resonance imaging.

Authors:  R B Seither; B Jose; K J Paris; R D Lindberg; W J Spanos
Journal:  Am J Clin Oncol       Date:  1995-08       Impact factor: 2.339

10.  Modeling glioma growth and mass effect in 3D MR images of the brain.

Authors:  Cosmina Hogea; Christos Davatzikos; George Biros
Journal:  Med Image Comput Comput Assist Interv       Date:  2007
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  8 in total

1.  Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology.

Authors:  Andreas Mang; Spyridon Bakas; Shashank Subramanian; Christos Davatzikos; George Biros
Journal:  Annu Rev Biomed Eng       Date:  2020-06-04       Impact factor: 9.590

2.  Coupling brain-tumor biophysical models and diffeomorphic image registration.

Authors:  Klaudius Scheufele; Andreas Mang; Amir Gholami; Christos Davatzikos; George Biros; Miriam Mehl
Journal:  Comput Methods Appl Mech Eng       Date:  2019-01-07       Impact factor: 6.756

3.  A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION.

Authors:  Andreas Mang; George Biros
Journal:  SIAM J Sci Comput       Date:  2017-11-21       Impact factor: 2.373

4.  WHERE DID THE TUMOR START? AN INVERSE SOLVER WITH SPARSE LOCALIZATION FOR TUMOR GROWTH MODELS.

Authors:  Shashank Subramanian; Klaudius Scheufele; Miriam Mehl; George Biros
Journal:  Inverse Probl       Date:  2020-02-26       Impact factor: 2.407

5.  Partial Differential Equation-Constrained Diffeomorphic Registration from Sum of Squared Differences to Normalized Cross-Correlation, Normalized Gradient Fields, and Mutual Information: A Unifying Framework.

Authors:  Monica Hernandez; Ubaldo Ramon-Julvez; Daniel Sierra-Tome
Journal:  Sensors (Basel)       Date:  2022-05-13       Impact factor: 3.847

6.  Constrained H1-regularization schemes for diffeomorphic image registration.

Authors:  Andreas Mang; George Biros
Journal:  SIAM J Imaging Sci       Date:  2016-08-30       Impact factor: 2.867

7.  CLAIRE-Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications.

Authors:  Naveen Himthani; Malte Brunn; Jae-Youn Kim; Miriam Schulte; Andreas Mang; George Biros
Journal:  J Imaging       Date:  2022-09-16

8.  Modeling of Glioma Growth With Mass Effect by Longitudinal Magnetic Resonance Imaging.

Authors:  Birkan Tunc; David Hormuth; George Biros; Thomas E Yankeelov
Journal:  IEEE Trans Biomed Eng       Date:  2021-11-19       Impact factor: 4.538

  8 in total

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