Literature DB >> 29075361

Constrained H1-regularization schemes for diffeomorphic image registration.

Andreas Mang1, George Biros1.   

Abstract

We propose regularization schemes for deformable registration and efficient algorithms for their numerical approximation. We treat image registration as a variational optimal control problem. The deformation map is parametrized by its velocity. Tikhonov regularization ensures well-posedness. Our scheme augments standard smoothness regularization operators based on H1- and H2-seminorms with a constraint on the divergence of the velocity field, which resembles variational formulations for Stokes incompressible flows. In our formulation, we invert for a stationary velocity field and a mass source map. This allows us to explicitly control the compressibility of the deformation map and by that the determinant of the deformation gradient. We also introduce a new regularization scheme that allows us to control shear. We use a globalized, preconditioned, matrix-free, reduced space (Gauss-)Newton-Krylov scheme for numerical optimization. We exploit variable elimination techniques to reduce the number of unknowns of our system; we only iterate on the reduced space of the velocity field. Our current implementation is limited to the two-dimensional case. The numerical experiments demonstrate that we can control the determinant of the deformation gradient without compromising registration quality. This additional control allows us to avoid oversmoothing of the deformation map. We also demonstrate that we can promote or penalize shear whilst controlling the determinant of the deformation gradient.

Entities:  

Keywords:  35Q93; 49J20; 65K10; 68U10; 76D55; Krylov method; constrained regularization schemes; inexact Newton; optimal control; shear control; stationary velocity field diffeomorphic registration; variable elimination; volume conservation

Year:  2016        PMID: 29075361      PMCID: PMC5654641          DOI: 10.1137/15M1010919

Source DB:  PubMed          Journal:  SIAM J Imaging Sci        ISSN: 1936-4954            Impact factor:   2.867


  34 in total

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3.  Deformable templates using large deformation kinematics.

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5.  Image matching as a diffusion process: an analogy with Maxwell's demons.

Authors:  J P Thirion
Journal:  Med Image Anal       Date:  1998-09       Impact factor: 8.545

6.  Estimation of slipping organ motion by registration with direction-dependent regularization.

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Journal:  Med Image Anal       Date:  2011-06-26       Impact factor: 8.545

7.  Piecewise-diffeomorphic image registration: application to the motion estimation between 3D CT lung images with sliding conditions.

Authors:  Laurent Risser; François-Xavier Vialard; Habib Y Baluwala; Julia A Schnabel
Journal:  Med Image Anal       Date:  2012-11-02       Impact factor: 8.545

8.  An implicit sliding-motion preserving regularisation via bilateral filtering for deformable image registration.

Authors:  Bartłomiej W Papież; Mattias P Heinrich; Jérome Fehrenbach; Laurent Risser; Julia A Schnabel
Journal:  Med Image Anal       Date:  2014-06-09       Impact factor: 8.545

9.  An inverse problem formulation for parameter estimation of a reaction-diffusion model of low grade gliomas.

Authors:  Amir Gholami; Andreas Mang; George Biros
Journal:  J Math Biol       Date:  2015-05-12       Impact factor: 2.259

10.  Diffeomorphic registration using geodesic shooting and Gauss-Newton optimisation.

Authors:  John Ashburner; Karl J Friston
Journal:  Neuroimage       Date:  2011-01-07       Impact factor: 6.556

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  9 in total

1.  Coupling brain-tumor biophysical models and diffeomorphic image registration.

Authors:  Klaudius Scheufele; Andreas Mang; Amir Gholami; Christos Davatzikos; George Biros; Miriam Mehl
Journal:  Comput Methods Appl Mech Eng       Date:  2019-01-07       Impact factor: 6.756

2.  A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION.

Authors:  Andreas Mang; George Biros
Journal:  SIAM J Sci Comput       Date:  2017-11-21       Impact factor: 2.373

3.  A LAGRANGIAN GAUSS-NEWTON-KRYLOV SOLVER FOR MASS- AND INTENSITY-PRESERVING DIFFEOMORPHIC IMAGE REGISTRATION.

Authors:  Andreas Mang; Lars Ruthotto
Journal:  SIAM J Sci Comput       Date:  2017-09-26       Impact factor: 2.373

4.  Multi-Node Multi-GPU Diffeomorphic Image Registration for Large-Scale Imaging Problems.

Authors:  Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang
Journal:  Int Conf High Perform Comput Netw Storage Anal       Date:  2020-11

5.  Partial Differential Equation-Constrained Diffeomorphic Registration from Sum of Squared Differences to Normalized Cross-Correlation, Normalized Gradient Fields, and Mutual Information: A Unifying Framework.

Authors:  Monica Hernandez; Ubaldo Ramon-Julvez; Daniel Sierra-Tome
Journal:  Sensors (Basel)       Date:  2022-05-13       Impact factor: 3.847

6.  A Symmetric Prior for the Regularisation of Elastic Deformations: Improved anatomical plausibility in nonlinear image registration.

Authors:  Frederik J Lange; John Ashburner; Stephen M Smith; Jesper L R Andersson
Journal:  Neuroimage       Date:  2020-06-01       Impact factor: 6.556

7.  CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures.

Authors:  Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang
Journal:  J Open Source Softw       Date:  2021-05-30

8.  CLAIRE-Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications.

Authors:  Naveen Himthani; Malte Brunn; Jae-Youn Kim; Miriam Schulte; Andreas Mang; George Biros
Journal:  J Imaging       Date:  2022-09-16

9.  Fast GPU 3D diffeomorphic image registration.

Authors:  Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang
Journal:  J Parallel Distrib Comput       Date:  2020-12-10       Impact factor: 3.734

  9 in total

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