Literature DB >> 25959995

A histogram approach to the quality of fit in sedimentation velocity analyses.

Jia Ma1, Huaying Zhao1, Peter Schuck2.   

Abstract

The quality of fit of sedimentation velocity data is critical to judge the veracity of the sedimentation model and accuracy of the derived macromolecular parameters. Absolute statistical measures are usually complicated by the presence of characteristic systematic errors and run-to-run variation in the stochastic noise of data acquisition. We present a new graphical approach to visualize systematic deviations between data and model in the form of a histogram of residuals. In comparison with the ideally expected Gaussian distribution, it can provide a robust measure of fit quality and be used to flag poor models. Published by Elsevier Inc.

Entities:  

Keywords:  Analytical ultracentrifugation; Sedimentation velocity

Mesh:

Year:  2015        PMID: 25959995      PMCID: PMC4461538          DOI: 10.1016/j.ab.2015.04.029

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  28 in total

1.  Direct sedimentation analysis of interference optical data in analytical ultracentrifugation.

Authors:  P Schuck; B Demeler
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  A comparison of weight average and direct boundary fitting of sedimentation velocity data for indefinite polymerizing systems.

Authors:  C A Sontag; W F Stafford; J J Correia
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

3.  Studying antibody conformations by ultracentrifugation and hydrodynamic modeling.

Authors:  Stephen E Harding; Emma Longman; Beatriz Carrasco; Alvaro Ortega; Jose Garcia de la Torre
Journal:  Methods Mol Biol       Date:  2004

Review 4.  Insight into protein-protein interactions from analytical ultracentrifugation.

Authors:  Stephen E Harding; Arthur J Rowe
Journal:  Biochem Soc Trans       Date:  2010-08       Impact factor: 5.407

5.  Sedimentation patterns of rapidly reversible protein interactions.

Authors:  Peter Schuck
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

6.  Analysis of residuals: criteria for determining goodness-of-fit.

Authors:  M Straume; M L Johnson
Journal:  Methods Enzymol       Date:  1992       Impact factor: 1.600

7.  The shock of the old: hydrodynamics for the masses.

Authors:  David J Scott
Journal:  Biochem Soc Trans       Date:  2008-08       Impact factor: 5.407

8.  Extracting equilibrium constants from kinetically limited reacting systems.

Authors:  John J Correia; Walter F Stafford
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

9.  Protein-protein and ligand-protein interactions studied by analytical ultracentrifugation.

Authors:  Walter F Stafford
Journal:  Methods Mol Biol       Date:  2009

10.  Some statistical properties of differencing schemes for baseline correction of sedimentation velocity data.

Authors:  Peter Schuck
Journal:  Anal Biochem       Date:  2010-03-03       Impact factor: 3.365

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  4 in total

1.  Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity.

Authors:  Jia Ma; Huaying Zhao; Julia Sandmaier; J Alexander Liddle; Peter Schuck
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Enhanced Sample Handling for Analytical Ultracentrifugation with 3D-Printed Centerpieces.

Authors:  Samuel C To; Chad A Brautigam; Sumit K Chaturvedi; Mary T Bollard; Jonathan Krynitsky; John W Kakareka; Thomas J Pohida; Huaying Zhao; Peter Schuck
Journal:  Anal Chem       Date:  2019-04-15       Impact factor: 6.986

3.  Returning Results: Let's Be Honest!

Authors:  Bernice S Elger; Eva De Clercq
Journal:  Genet Test Mol Biomarkers       Date:  2017-02-24

4.  Sedimentation coefficient distributions of large particles.

Authors:  Peter Schuck
Journal:  Analyst       Date:  2016-05-19       Impact factor: 4.616

  4 in total

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