Literature DB >> 27196374

Sedimentation coefficient distributions of large particles.

Peter Schuck1.   

Abstract

The spatial and temporal evolution of concentration boundaries in sedimentation velocity analytical ultracentrifugation reports on the size distribution of particles with high hydrodynamic resolution. For large particles such as large protein complexes, fibrils, viral particles, or nanoparticles, sedimentation conditions usually allow migration from diffusion to be neglected relative to sedimentation. In this case, the shape of the sedimentation boundaries of polydisperse mixtures relates directly to the underlying size-distributions. Integral and derivative methods for calculating sedimentation coefficient distributions g*(s) of large particles from experimental boundary profiles have been developed previously, and are recapitulated here in a common theoretical framework. This leads to a previously unrecognized relationship between g*(s) and the time-derivative of concentration profiles. Of closed analytical form, it is analogous to the well-known Bridgman relationship for the radial derivative. It provides a quantitative description of the effect of substituting the time-derivative by scan differences with finite time intervals, which appears as a skewed box average of the true distribution. This helps to theoretically clarify the differences between results from time-derivative method and the approach of directly fitting the integral definition of g*(s) to the entirety of experimental boundary data.

Entities:  

Year:  2016        PMID: 27196374      PMCID: PMC4931980          DOI: 10.1039/c6an00534a

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  39 in total

1.  A method for directly fitting the time derivative of sedimentation velocity data and an alternative algorithm for calculating sedimentation coefficient distribution functions.

Authors:  J S Philo
Journal:  Anal Biochem       Date:  2000-03-15       Impact factor: 3.365

2.  Direct sedimentation analysis of interference optical data in analytical ultracentrifugation.

Authors:  P Schuck; B Demeler
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

3.  Biochemical and biological characterization of a dodecameric CD4-Ig fusion protein: implications for therapeutic and vaccine strategies.

Authors:  James Arthos; Claudia Cicala; Tavis D Steenbeke; Tae-Wook Chun; Charles Dela Cruz; Douglas B Hanback; Prateeti Khazanie; Daniel Nam; Peter Schuck; Sara M Selig; Donald Van Ryk; Margery A Chaikin; Anthony S Fauci
Journal:  J Biol Chem       Date:  2002-01-22       Impact factor: 5.157

4.  A model for sedimentation in inhomogeneous media. II. Compressibility of aqueous and organic solvents.

Authors:  Peter Schuck
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

5.  Sedimentation velocity analysis of amyloid oligomers and fibrils using fluorescence detection.

Authors:  Yee-Foong Mok; Timothy M Ryan; Shuo Yang; Danny M Hatters; Geoffrey J Howlett; Michael D W Griffin
Journal:  Methods       Date:  2010-11-03       Impact factor: 3.608

6.  Dynamic range multiwavelength particle characterization using analytical ultracentrifugation.

Authors:  Johannes Walter; Wolfgang Peukert
Journal:  Nanoscale       Date:  2016-04-14       Impact factor: 7.790

7.  Validity range of centrifuges for the regulation of nanomaterials: from classification to as-tested coronas.

Authors:  Wendel Wohlleben
Journal:  J Nanopart Res       Date:  2012-11-24       Impact factor: 2.253

8.  Some statistical properties of differencing schemes for baseline correction of sedimentation velocity data.

Authors:  Peter Schuck
Journal:  Anal Biochem       Date:  2010-03-03       Impact factor: 3.365

9.  On computational approaches for size-and-shape distributions from sedimentation velocity analytical ultracentrifugation.

Authors:  Peter Schuck
Journal:  Eur Biophys J       Date:  2009-10-06       Impact factor: 1.733

10.  A structural framework for a near-minimal form of life: mass and compositional analysis of the helical mollicute Spiroplasma melliferum BC3.

Authors:  Shlomo Trachtenberg; Peter Schuck; Terry M Phillips; S Brian Andrews; Richard D Leapman
Journal:  PLoS One       Date:  2014-02-21       Impact factor: 3.240

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  6 in total

1.  Sedimentation of Reversibly Interacting Macromolecules with Changes in Fluorescence Quantum Yield.

Authors:  Sumit K Chaturvedi; Huaying Zhao; Peter Schuck
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

Review 2.  Best Practices for Aggregate Quantitation of Antibody Therapeutics by Sedimentation Velocity Analytical Ultracentrifugation.

Authors:  George M Bou-Assaf; Ivan L Budyak; Michael Brenowitz; Eric S Day; David Hayes; John Hill; Ranajoy Majumdar; Paola Ringhieri; Peter Schuck; Jasper C Lin
Journal:  J Pharm Sci       Date:  2022-01-02       Impact factor: 3.784

3.  Engineered Chimeras Unveil Swappable Modular Features of Fatty Acid and Polyketide Synthase Acyl Carrier Proteins.

Authors:  Yae In Cho; Claire L Armstrong; Ariana Sulpizio; Kofi K Acheampong; Kameron N Banks; Oishi Bardhan; Sydney J Churchill; Annie E Connolly-Sporing; Callie E W Crawford; Peter L Cruz Parrilla; Sarah M Curtis; Lauren M De La Ossa; Samuel C Epstein; Clara J Farrehi; Grayson S Hamrick; William J Hillegas; Austin Kang; Olivia C Laxton; Joie Ling; Sara M Matsumura; Victoria M Merino; Shahla H Mukhtar; Neel J Shah; Casey H Londergan; Clyde A Daly; Bashkim Kokona; Louise K Charkoudian
Journal:  Biochemistry       Date:  2022-01-24       Impact factor: 3.321

4.  Quantitative Analysis of Protein Self-Association by Sedimentation Velocity.

Authors:  Huaying Zhao; Wenqi Li; Wendan Chu; Mary Bollard; Regina Adão; Peter Schuck
Journal:  Curr Protoc Protein Sci       Date:  2020-09

5.  Characterisation of mass distributions of solvent-fractionated lignins using analytical ultracentrifugation and size exclusion chromatography methods.

Authors:  Yudong Lu; Lionard Joosten; Jacqueline Donkers; Fabrizio Andriulo; Ted M Slaghek; Mary K Phillips-Jones; Richard J A Gosselink; Stephen E Harding
Journal:  Sci Rep       Date:  2021-07-06       Impact factor: 4.379

6.  Measuring macromolecular size distributions and interactions at high concentrations by sedimentation velocity.

Authors:  Sumit K Chaturvedi; Jia Ma; Patrick H Brown; Huaying Zhao; P Schuck
Journal:  Nat Commun       Date:  2018-10-24       Impact factor: 14.919

  6 in total

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