Literature DB >> 25959207

Stability of energy metabolites-An often overlooked issue in metabolomics studies: A review.

Andres Gil1, David Siegel1, Hjalmar Permentier2, Dirk-Jan Reijngoud3, Frank Dekker4, Rainer Bischoff1.   

Abstract

Recent advances in analytical chemistry have set the stage for metabolite profiling to help understand complex molecular processes in physiology. Despite ongoing efforts, there are concerns regarding metabolomics workflows, since it has been shown that internal (enzyme activity, blood contamination, and the dynamic nature of metabolite concentrations) as well as external factors (storage, handling, and analysis method) may affect the metabolome profile. Many metabolites are intrinsically instable, particularly some of those associated with central carbon metabolism. While enzymatic conversions have been studied in great detail, nonenzymatic, chemical conversions received comparatively little attention. This review aims to give an in-depth overview of nonenzymatic energy metabolite degradation/interconversion chemistry focusing on a selected range of metabolites. Special attention will be given to qualitative (degradation pathways) as well as quantitative aspects, that may affect the acquisition of accurate data in the context of metabolomics studies. Problems related to the use of isotopically labeled internal standards hindering the quantitative analysis of common metabolites will be presented with an experimental example. Finally, general conclusions and perspectives are given.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Central carbon metabolism; Interconversion; Metabolomics; Nonenzymatic degradation; Preanalytical phase; Stability

Year:  2015        PMID: 25959207     DOI: 10.1002/elps.201500031

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  15 in total

Review 1.  Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.

Authors:  Jeremy P Koelmel; Candice Z Ulmer; Christina M Jones; Richard A Yost; John A Bowden
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2017-03-02       Impact factor: 4.698

2.  Whole Blood Metabolomics by 1H NMR Spectroscopy Provides a New Opportunity To Evaluate Coenzymes and Antioxidants.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2017-03-30       Impact factor: 6.986

3.  Individual variability in human blood metabolites identifies age-related differences.

Authors:  Romanas Chaleckis; Itsuo Murakami; Junko Takada; Hiroshi Kondoh; Mitsuhiro Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

4.  Extraction and Quantitation of Nicotinamide Adenine Dinucleotide Redox Cofactors.

Authors:  Wenyun Lu; Lin Wang; Li Chen; Sheng Hui; Joshua D Rabinowitz
Journal:  Antioxid Redox Signal       Date:  2017-07-19       Impact factor: 8.401

Review 5.  Metabolite Measurement: Pitfalls to Avoid and Practices to Follow.

Authors:  Wenyun Lu; Xiaoyang Su; Matthias S Klein; Ian A Lewis; Oliver Fiehn; Joshua D Rabinowitz
Journal:  Annu Rev Biochem       Date:  2017-06-20       Impact factor: 23.643

6.  A novel method of sample homogenization with the use of a microtome-cryostat apparatus.

Authors:  Ekaterina A Zelentsova; Vadim V Yanshole; Yuri P Tsentalovich
Journal:  RSC Adv       Date:  2019-11-20       Impact factor: 4.036

7.  Quantitative profiling of carbonyl metabolites directly in crude biological extracts using chemoselective tagging and nanoESI-FTMS.

Authors:  Pan Deng; Richard M Higashi; Andrew N Lane; Ronald C Bruntz; Ramon C Sun; Mandapati V Ramakrishnam Raju; Michael H Nantz; Zhen Qi; Teresa W-M Fan
Journal:  Analyst       Date:  2017-12-18       Impact factor: 4.616

8.  The degradation of nucleotide triphosphates extracted under boiling ethanol conditions is prevented by the yeast cellular matrix.

Authors:  Andres Gil; David Siegel; Silke Bonsing-Vedelaar; Hjalmar Permentier; Dirk-Jan Reijngoud; Frank Dekker; Rainer Bischoff
Journal:  Metabolomics       Date:  2016-11-28       Impact factor: 4.290

9.  Tenofovir and adefovir down-regulate mitochondrial chaperone TRAP1 and succinate dehydrogenase subunit B to metabolically reprogram glucose metabolism and induce nephrotoxicity.

Authors:  Xinbin Zhao; Kun Sun; Zhou Lan; Wenxin Song; Lili Cheng; Wenna Chi; Jing Chen; Yi Huo; Lina Xu; Xiaohui Liu; Haiteng Deng; Julie A Siegenthaler; Ligong Chen
Journal:  Sci Rep       Date:  2017-04-11       Impact factor: 4.379

Review 10.  A Review of Efforts to Improve Lipid Stability during Sample Preparation and Standardization Efforts to Ensure Accuracy in the Reporting of Lipid Measurements.

Authors:  Candice Z Ulmer; Jeremy P Koelmel; Christina M Jones; Timothy J Garrett; Juan J Aristizabal-Henao; Hubert W Vesper; John A Bowden
Journal:  Lipids       Date:  2020-06-09       Impact factor: 1.646

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