| Literature DB >> 25959001 |
Joan Duran1, Pilar Sánchez Olavarría2,3, Marina Mola4,5, Víctor Götzens6, Julio Carballo7, Eva Martín Pelegrina8, Màrius Petit9, Omar Abdul-Jawad10, Imanol Otaegui11, Bruno García del Blanco12, David García-Dorado13, Josep Reig14, Alex Cordero15,16, Josep Maria de Anta17.
Abstract
BACKGROUND: Collateral growth in patients with coronary artery disease (CAD) is highly heterogeneous. Although multiple factors are thought to play a role in collateral development, the contribution of genetic factors to coronary collateral circulation (CCC) is largely unknown. The goal of this study was to assess whether functional single nucleotide polymorphisms (SNPs) in genes involved in vascular growth are associated with CCC.Entities:
Mesh:
Year: 2015 PMID: 25959001 PMCID: PMC4493944 DOI: 10.1186/s12872-015-0027-z
Source DB: PubMed Journal: BMC Cardiovasc Disord ISSN: 1471-2261 Impact factor: 2.298
SNPs analyzed in the study
| Gene | Role in angiogenesis/arteriogenesis | SNP | Other HGVS names | Location | Functional category | FS score | Association to CCC | Association to CAD | Functional relevance |
|---|---|---|---|---|---|---|---|---|---|
|
| Both [ | rs11549465 | p.Pro582Ser | Exon 2 | Missense variant | 0.627 | [ | [ | Influences transactivation activity [ |
| rs2057482 | c.*45 T > C | 3’-UTR | 3’ UTR variant | 0 | - | [ | Influences transactivation activity [ | ||
|
| Both [ | rs2010963 | c.-634C > G | Promoter | Regulatory region variant | 0.257 | [ | [ | Influences protein production [ |
| rs1570360 | c.-1154A > G | Promoter | Regulatory region variant | 0.242 | - | - | Influences protein production and related to VEGFA serum levels [ | ||
| rs699947 | c.-2055A > C | Upstream gene | Regulatory region variant | 0.176 | [ | [ | Influences protein production and related to VEGFA serum levels [ | ||
| rs3025039 | c.*237C > T | 3’-UTR | 3’ UTR variant | 0 | - | - | Related to VEGFA serum levels [ | ||
| rs833061 | c.-958C > T | Promoter | Regulatory region variant | 0.282 | - | - | Related to VEGFA serum levels [ | ||
|
| Both [ | rs1870377 | p.Gln472His | Exon 11 | Missense variant | 0.103 | - | [ | - |
| rs2305948 | p.Val297Ile | Exon 7 | Missense variant | 0.621 | - | [ | - | ||
| rs2071559 | c.-906 T > C | Promoter flanking | Regulatory region variant | - | [ | - | |||
|
| Arteriogenesis [ | rs1024611 | g.2493A > G | Promoter flanking | Regulatory region variant | 0.208 | - | Related to myocardial infarction [ | Related to MCP1 serum levels [ |
| rs1024610 | g.2936 T > A | Promoter flanking | Regulatory region variant | 0.158 | - | Related to myocardial infarction [ | Related to MCP1 serum levels [ | ||
| rs2857657 | g.5837G > C | Non coding exon | Non coding transcript exon variant | 0.176 | - | - | - | ||
| rs2857654 | g.2236C > A | Promoter flanking | Regulatory region variant | 0 | - | - | - | ||
|
| Both [ | rs1799983 | p.Asp298Glu | Exon 7 | Missense variant | 1 | [ | [ | Influences activity by different susceptibility to cleavage [ |
|
| Arteriogenesis [ | rs5498 | p.Lys469Glu | Exon 2 | Missense variant | 0.092 | - | Related to coronary artery calcification [ | Related to s-ICAM1 levels [ |
| rs3093030 | c.-286C > T | Non coding exon | Non coding transcript exon variant | 0.208 | - | - | Related to s-ICAM1 levels [ | ||
|
| Both [ | rs1800469 | c.*309 T > C | Promoter | Regulatory region variant | 0.208 | - | [ | - |
|
| - | rs6679497 | c.-17-5027C > G | Intron 2 | Regulatory region variant | - | - | Associated to TNFα levels [ | |
|
| Angiogenesis [ | rs3829365 | c.-33C > G | Promoter flanking | Regulatory region variant | 0 | - | Associated with heart failure [ | - |
| rs1028728 | c.-953 T > A | Promoter flanking | Regulatory region variant | 0.5 | - | - | - | ||
|
| Both [ | rs7291467 | c.6 + 3279C > T | Intron 1 | Regulatory region variant | [ | Related to myocardial infarction [ | - |
Abbreviations: CCC, coronary collateral circulation; CAD, coronary artery disease. FS score: functional effects of SNPs obtained from 16 bioinformatics tools and databases. (http://compbio.cs.queensu.ca/F-SNP/)
Epidemiological and Clinical Characteristics of CAD patients with poor and good CCC
| Characteristic | Poor CCC | Good CCC | p value |
|---|---|---|---|
| n = 546 (%) | n = 131 (%) | ||
| Age | 65.26 ± 10.88 | 66.76 ± 10.06 | 0.187 |
| Gender | 460 (84.25) | 110 (83.97) | 0.937 |
| Hypertension | 372 (68.13) | 97 (74.05) | 0.188 |
| Diabetes mellitus | 146 (26.74) | 47 (35.88) | 0.037* |
| Hyperlipidemia | 381 (69.78) | 96 (73.28) | 0.430 |
| Smoking | 126 (23.08) | 33 (25.19) | 0.608 |
| Angina history | 383 (70.15) | 93 (70.99) | 0.849 |
| Previous myocardial infarction | 196 (35.90) | 43 (32.82) | 0.509 |
| Medication with statins | 188 (34.43) | 58 (44.27) | 0.035* |
Abbreviations: CCC, coronary collateral circulation. Values are given as mean (S.D.) or numbers of patients (%). p <0.05 was considered as statistically significant (*)
Association of genotype and allele distribution of examined polymorphisms with CAD patients with poor and good CCC
| Gene | dbSNP ID | Patients | n | Genotype count (frequency) | P valuea | Allele count (frequency) | P valueb | HWE P | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
| rs2010963 | GG | GC | CC | G | C | |||||
| Poor CCC | 531 | 247 (46.52) | 224 (42.18) | 60 (11.30) | 0.5760 | 718 (67.61) | 344 (32.39) | 0.495 | 0.8216 | ||
| Good CCC | 121 | 50 (41.32) | 58 (47.93) | 13 (10.75) | 158 (65.29) | 84 (34.71) | |||||
| rs1570360 | GG | GA | AA | G | A | ||||||
| Poor CCC | 451 | 207 (45.90) | 197 (43.68) | 47 (10.42) | 0.782 | 611 (67.74) | 291 (32.26) | 0.521 | 0.8494 | ||
| Good CCC | 97 | 47 (48.45) | 42 (43.30) | 8 (8.25) | 136 (70.10) | 58 (29.90) | |||||
| rs699947 | CC | AC | AA | C | A | ||||||
| Poor CCC | 494 | 138 (27.94) | 245 (49.59) | 111 (22.47) | 0.816 | 521 (52.73) | 467 (47.27) | 0.968 | 0.5199 | ||
| Good CCC | 104 | 31 (29.81) | 48 (46.15) | 25 (24.04) | 110 (52.90) | 98 (47.12) | |||||
| rs3025039 | CC | CT | TT | C | T | ||||||
| Poor CCC | 498 | 386 (77.51) | 106 (21.29) | 6 (1.20) | 0.665 | 878 (88.15) | 118 (11.85) | 0.714 | 0.9533 | ||
| Good CCC | 105 | 84 (80) | 19 (18.10) | 2 (1.90) | 187 (89.05) | 23 (10.95) | |||||
| rs833061 | CC | CT | TT | C | T | ||||||
| Poor CCC | 526 | 124 (23.57) | 268 (50.95) | 134 (25.48) | 0.471 | 516 (49.05) | 536 (50.95) | 0.232 | 0.6392 | ||
| Good CCC | 121 | 33 (27.27) | 63 (52.07) | 25 (20.66) | 129 (53.31) | 113 (46.69) | |||||
|
| rs1870377 | TT | AT | AA | T | A | |||||
| Poor CCC | 496 | 291 (58.67) | 178 (35.89) | 27 (5.44) | 0.613 | 760 (76.61) | 232 (23.39) | 0.328 | 0.8991 | ||
| Good CCC | 106 | 67 (63.21) | 35 (33.02) | 4 (3.77) | 169 (79.72) | 43 (20.28) | |||||
| rs2305948 | CC | CT | TT | C | T | ||||||
| Poor CCC | 582 | 487 (83.68) | 88 (15.12) | 7 (1.20) | 0.199 | 1062 (91.24) | 102 (8.76) | 0.207 | 0.3210 | ||
| Good CCC | 153 | 120 (78.43) | 32 (20.92) | 1 (0.65) | 272 (88.89) | 34 (11.11) | |||||
| rs2071559 | TT | CT | CC | T | C | ||||||
| Poor CCC | 544 | 147 (27.02) | 276 (50.74) | 121 (22.24) | 0.319 | 570 (52.39) | 518 (47.61) | 0.140 | 0.8355 | ||
| Good CCC | 129 | 29 (22.48) | 64 (49.61) | 36 (27.91) | 122 (47.29) | 136 (52.71) | |||||
|
| rs1024611 | AA | AG | GG | A | G | |||||
| Poor CCC | 576 | 332 (57.64) | 210 (36.46) | 34 (5.90) | 0.221 | 874 (75.87) | 278 (24.13) | 0.826 | 0.3186 | ||
| Good CCC | 153 | 94 (61.44) | 46 (30.06) | 13 (8.50) | 234 (76.47) | 72 (23.53) | |||||
| rs1024610 | AA | AT | TT | A | T | ||||||
| Poor CCC | 516 | 312 (60.47) | 180 (34.88) | 24 (4.65) | 0.516 | 804 (77.91) | 228 (22.09) | 0.715 | 0.6077 | ||
| Good CCC | 112 | 68 (60.71) | 36 (32.15) | 8 (7.14) | 172 (76.79) | 52 (23.21) | |||||
| rs2857657 | CC | CG | GG | C | G | ||||||
| Poor CCC | 511 | 309 (60.47) | 181 (35.42) | 21 (4.11) | 0.365 | 799 (78.18) | 223 (21.82) | 0.832 | 0.8093 | ||
| Good CCC | 111 | 71 (63.96) | 33 (29.73) | 7 (6.31) | 175 (78.83) | 47 (21.17) | |||||
| rs2857654 | CC | AC | AA | C | A | ||||||
| Poor CCC | 580 | 336 (57.93) | 211 (36.38) | 33 (5.69) | 0.248 | 883 (76.12) | 277 (23.88) | 0.993 | 0.4284 | ||
| Good CCC | 153 | 93 (60.78) | 47 (30.72) | 13 (8.50) | 233 (76.14) | 73 (23.86) | |||||
|
| rs1799983 | GG | GT | TT | G | T | |||||
| Poor CCC | 513 | 211 (41.13) | 216 (42.11) | 86 (16.76) | 0.596 | 638 (62.18) | 388 (37.82) | 0.686 | 0.0157* | ||
| Good CCC | 110 | 46 (41.82) | 48 (43.64) | 16 (14.54) | 140 (63.64) | 80 (36.36) | |||||
|
| rs5498 | AA | AG | GG | A | G | |||||
| Poor CCC | 516 | 136 (26.36) | 246 (47.67) | 134 (25.97) | 0.308 | 518 (50.19) | 514 (49.81) | 0.958 | 0.1039 | ||
| Good CCC | 112 | 33 (29.46) | 46 (41.08) | 33 (29.46) | 112 (50.00) | 112 (50.00) | |||||
| rs3093030 | CC | CT | TT | C | T | ||||||
| Poor CCC | 517 | 134 (25.92) | 248 (47.97) | 135 (26.11) | 0.415 | 516 (49.90) | 518 (50.10) | 0.883 | 0.1535 | ||
| Good CCC | 112 | 33 (29.46) | 47 (41.97) | 32 (28.57) | 113 (50.45) | 111 (49.55) | |||||
|
| rs1800469 | GG | GA | AA | G | A | |||||
| Poor CCC | 483 | 198 (50.00) | 228 (47.20) | 57 (11.80) | 0.696 | 624 (64.60) | 342 (35.40) | 0.979 | 0.8844 | ||
| Good CCC | 100 | 43 (43.00) | 43 (43.00) | 14 (14.00) | 129 (64.50) | 71 (35.50) | |||||
|
| rs6679497 | GG | GA | AA | G | A | |||||
| Poor CCC | 483 | 198 (41.00) | 228 (47.20) | 57 (11.80) | 0.826 | 624 (64.60) | 342 (35.40) | 0.572 | 0.6712 | ||
| Good CCC | 100 | 43 (43.00) | 43 (43.00) | 14 (14.00) | 129 (64.50) | 71 (35.50) | |||||
|
| rs3829365 | GG | GC | CC | G | C | |||||
| Poor CCC | 405 | 357 (88.15) | 22 (5.43) | 26 (6.42) | 0.795 | 736 (90.86) | 74 (9.14) | 0.535 | 0.0000* | ||
| Good CCC | 76 | 69 (90.79) | 3 (3.95) | 4 (5.26) | 141 (92.76) | 11 (7.24) | |||||
| rs1028728 | AA | AT | TT | A | T | ||||||
| Poor CCC | 389 | 242 (62.21) | 128 (32.91) | 19 (4.88) | 0.230 | 612 (78.66) | 166 (21.34) | 0.105 | 0.7373 | ||
| Good CCC | 77 | 54 (70.13) | 22 (28.57) | 1 (1.30) | 130 (84.42) | 24 (15.58) | |||||
|
| rs7291467 | AA | AG | GG | A | G | |||||
| Poor CCC | 581 | 160 (27.54) | 292 (50.26) | 129 (22.20) | 0.106 | 612 (52.67) | 550 (47.33) | 0.080 | 0.9589 | ||
| Good CCC | 151 | 37 (24.50) | 68 (45.03) | 46 (30.47) | 142 (47.02) | 160 (52.98) | |||||
|
| rs11549465 | CC | CT | TT | C | T | |||||
| Poor CCC | 518 | 402 (77.60) | 111 (21.43) | 5 (0.97) | 0.563 | 915 (88.32) | 121 (11.68) | 0.474 | 0.4122 | ||
| Good CCC | 112 | 84 (75) | 26 (23.21) | 2 (1.79) | 194 (86.61) | 30 (13.39) | |||||
| rs2057482 | CC | CT | TT | C | T | ||||||
| Poor CCC | 497 | 339 (68.21) | 148 (29.78) | 10 (2.01) | 0.490 | 826 (83.10) | 168 (16.90) | 0.328 | 0.1151 | ||
| Good CCC | 111 | 70 (63.06) | 38 (34.24) | 3 (2.70) | 178 (80.18) | 44 (19.82) | |||||
aFisher’s exact test was used to evaluate differences between genotype groups. bPearson’s chi-squared, χ2, was used for to evaluate the allele distribution. *p <0.05 was considered as statistically significant