| Literature DB >> 30678728 |
Yilan Li1,2, Shipeng Wang1,2, Dandan Zhang1,2, Xueming Xu1, Bo Yu1,2, Yao Zhang3,4.
Abstract
BACKGROUND: The association of platelet endothelial cell adhesion molecule 1 (PECAM1), hypoxia-inducible factor 1 subunit alpha (HIF1A), and KIAA1462 in myocardial infarction (MI) was investigated. The study included 401 Han Chinese MI patients and 409 controls. Three tag single-nucleotide polymorphisms (SNPs)-PECAM1 rs1867624, HIF1A rs2057482, and KIAA1462 rs3739998-were selected. SNP genotyping was performed by an improved multiplex ligation detection reaction assay. A systematic review and meta-analysis of studies including 3314 cases and 2687 controls on the association of 5 HIF1A SNPs and the overall risk of MI or coronary artery disease (CAD) was performed.Entities:
Keywords: Coronary artery disease; HIF1A; KIAA1462; Myocardial infarction; PECAM1; Single-nucleotide polymorphism
Mesh:
Substances:
Year: 2019 PMID: 30678728 PMCID: PMC6345039 DOI: 10.1186/s40246-018-0189-8
Source DB: PubMed Journal: Hum Genomics ISSN: 1473-9542 Impact factor: 4.639
Baseline characteristics of the individuals included in the study
| Variables | MI ( | Controls ( | OR (95% CI)a | |
|---|---|---|---|---|
| Age, years | 58.20 (11.65) | 56.34 (9.52) | 0.84 (0.75-1.24) | 0.223 |
| Male sex, No. (%) | 329 (82.0%) | 339 (82.9%) | 0.94 (0.66- 1.36) | 0.753 |
| Smoking, No. (%) | 242 (60.3%) | 187 (45.7%) | ||
| Alcohol, No. (%) | 105 (26.2%) | 82 (20.0%) | ||
| Diabetes, No. (%) | 99 (26.7%) | 50 (12.2%) | ||
| Hypertension, No. (%) | 192 (47.9%) | 143 (35.0%) | ||
| Hypercholesterolemia, No. (%) | 55 (13.7%) | 39 (9.5%) | 0.66 (0.43-1.03) | 0.063 |
| WBC, 109/L | 11.96 (3.81) | 6.84 (1.90) | ||
| FBG, mmol/L | 6.44 (5.10, 8.88) | 5.34 (4.93, 6.04) | ||
| CRE, μmol/L | 81.00 (69.00, 95.30) | 71.00 (62.00, 80.00) | ||
| AST, U/L | 37.00 (22.00, 117.50) | 24.00 (20.00, 28.00) | ||
| Total cholesterol, mmol/L | 4.56 (1.05) | 4.96 (0.84) | ||
| Triglycerides, mmol/L | 1.38 (0.95,1.93) | 1.32 (0.92, 2.02) | 0.99 (0.88-1.11) | 0.764 |
| HDL cholesterol, mmol/L | 1.23 (1.06, 1.43) | 1.31 (1.13, 1.52) | ||
| LDL cholesterol, mmol/L | 2.77 (0.83) | 3.30 (0.73) |
Values are mean ± SD or n (%), continuous variables that have skewed distribution are expressed as median (25, 75 percentiles)
Type 2 diabetes was diagnosed: (1) fasting plasma glucose (FPG) ≥ 7.0 mmol/L; (2) 2 h postprandial glucose ≥ 11.1 mmol/L; or (3) use of anti-diabetic medications. Hypertension was defined as systolic/diastolic blood pressure ≥ 140 mmHg or ≥ 90 mmHg or use of antihypertensive medications. Hypercholesterolemia was defined as use of cholesterol-lowering medications or total serum cholesterol > 200 mg/dl. WBC white blood cell, FBG fasting blood glucose, AST aspartate transaminase, CRE creatinine, HDL high-density lipoprotein, LDL low-density lipoprotein
aBinary regression
bTwo-sided chi-square test or independent-samples 푡 test
cp values under 0.05 were shown in italic font
Genotypic and allelic frequencies of three SNPs in MI cases and controls
| SNP/group | Genotypea ( | χ2 |
| Allele ( | χ2 |
| OR (95% CI) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| rs1867624 | CC | CT | TT | C | T | |||||
| Case | 28 (0.07) | 133 (0.33) | 240 (0.60) | 189 (0.24) | 613 (0.76) | 2.94 | 0.086 | 1.23 (0.97–1.23) | ||
| Control | 18 (0.04) | 128 (0.31) | 263 (0.64) | 0.88 | 0.349 | 164 (0.20) | 654 (0.80) | |||
| rs2057482 | TT | CT | CC | T | C | |||||
| Case | 17 (0.04) | 132 (0.33) | 252 (0.63) | 166 (0.21) | 636 (0.79) | 0.11 | 0.75 | 1.04 (0.82–1.33) | ||
| Control | 22 (0.05) | 120 (0.29) | 267 (0.65) | 2.94 | 0.09 | 164 (0.20) | 654 (0.80) | |||
| rs3739998 | GG | GC | CC | G | C | |||||
| Case | 20 (0.05) | 132 (0.33) | 249 (0.62) | 172 (0.21) | 630 (0.79) | 0.26 | 0.611 | 0.94 (0.74–1.19) | ||
| Control | 24 (0.06) | 136 (0.33) | 249 (0.61) | 0.23 | 0.630 | 184 (0.22) | 634 (0.78) | |||
aAll are in HWE. SNP Single nucleotide polymorphism, MI myocardial infarction
Genetic models analyses of the association between three SNPs and MI susceptibility
| SNP/group | Genotype | χ2 |
| OR (95% CI) | |
|---|---|---|---|---|---|
| rs1867624 | |||||
| Dominant | TT + CT | CC | |||
| Case | 161 (0.40) | 240 (0.60) | 1.71 | 0.192 | 1.21 (0.91–1.61) |
| Control | 146 (0.36) | 263 (0.64) | |||
| Recessive | TT | CT + CC | |||
| Case | 28 (0.07) | 373 (0.93) | 2.52 | 0.112 | 1.63 (0.89–2.98) |
| Control | 18 (0.04) | 391 (0.96) | |||
| rs2057482 | |||||
| Dominant | TT + CT | CC | |||
| Case | 149 (0.37) | 252 (0.63) | 0.52 | 0.47 | 1.11 (0.83–1.48) |
| Control | 142 (0.35) | 267 (0.65) | |||
| Recessive | TT | CT + CC | |||
| Case | 17 (0.04) | 384 (0.96) | 0.57 | 0.45 | 0.78 (0.41–1.49) |
| Control | 22 (0.05) | 387 (0.95) | |||
| rs3739998 | |||||
| Dominant | CC + GC | GG | |||
| Case | 152 (0.38) | 249 (0.62) | 0.13 | 0.722 | 0.95 (0.71–1.26) |
| Control | 160 (0.39) | 249 (0.61) | |||
| Recessive | CC | GC + GG | |||
| Case | 20 (0.05) | 381 (0.95) | 0.31 | 0.580 | 0.84 (0.46–1.55) |
| Control | 24 (0.06) | 385 (0.94) | |||
SNP single nucleotide polymorphism, MI myocardial infarction
Lipid levels according to genotype in cases and controls
| SNP | Genotype (counts) | TC mmol/L | TG mmol/L | HDL-C mmol/L | LDL-C mmol/L | CRE μmol/L | FBG mmol/L |
|---|---|---|---|---|---|---|---|
| rs1867624 | |||||||
| Case | CC (28) | 4.47 ± 1.18 | 1.32 ± 0.95 | 1.39 ± 0.62 | 2.80 ± 0.90 | 83.03 ± 13.66 | 6.38 ± 4.37 |
| CT (133) | 4.53 ± 1.09 | 1.71 ± 1.23 | 1.29 ± 0.52 | 2.72 ± 0.90 | 84.04 ± 32.32 | 7.44 ± 3.58 | |
| TT (240) | 4.59 ± 1.00 | 1.65 ± 1.08 | 1.25 ± 0.33 | 2.79 ± 0.79 | 86.88 ± 30.36 | 7.05 ± 3.94 | |
|
| 0.876 | 0.744 | 0.737 | 0.659 | 0.703 | ||
| Control | CC (18) | 5.13 ± 1.07 | 1.80 ± 1.87 | 1.42 ± 0.43 | 3.30 ± 0.74 | 72.83 ± 12.28 | 6.95 ± 3.96 |
| CT (128) | 5.04 ± 0.78 | 1.76 ± 1.29 | 1.36 ± 0.36 | 3.34 ± 0.74 | 71.35 ± 12.20 | 5.81 ± 1.91 | |
| TT (263) | 4.89 ± 0.86 | 1.61 ± 1.14 | 1.38 ± 0.36 | 3.25 ± 0.75 | 70.46 ± 13.89 | 5.93 ± 1.69 | |
|
| 0.262 | 0.353 | 0.843 | 0.396 | 0.471 | 0.072 | |
| rs2057482 | |||||||
| Case | TT (17) | 4.92 ± 1.07 | 1.48 ± 0.75 | 1.40 ± 0.22 | 3.10 ± 0.92 | 83.88 ± 24.60 | 8.22 ± 3.64 |
| CT (132) | 4.55 ± 0.98 | 1.59 ± 0.82 | 1.20 ± 0.24 | 2.83 ± 0.84 | 88.12 ± 31.46 | 7.69 ± 3.60 | |
| CC (252) | 4.54 ± 1.08 | 1.69 ± 1.28 | 1.32 ± 0.49 | 2.71 ± 0.82 | 85.90 ± 28.11 | 7.61 ± 3.37 | |
|
| 0.493 | 0.811 | 0.203 | 0.944 | 0.424 | ||
| Control | TT (22) | 4.96 ± 0.60 | 1.80 ± 1.73 | 1.43 ± 0.33 | 3.12 ± 0.65 | 72.00 ± 11.69 | 5.98 ± 2.16 |
| CT (120) | 5.01 ± 0.92 | 1.77 ± 1.20 | 1.40 ± 0.41 | 3.32 ± 0.84 | 71.18 ± 13.94 | 5.94 ± 1.87 | |
| CC (267) | 4.92 ± 0.83 | 1.61 ± 1.19 | 1.36 ± 0.35 | 3.28 ± 0.71 | 70.60 ± 13.16 | 5.93 ± 1.93 | |
|
| 0.327 | 0.064 | 0.396 | 0.375 | 0.910 | 0.819 | |
| rs3739998 | |||||||
| Case | GG (20) | 4.47 ± 1.22 | 1.78 ± 1.64 | 1.20 ± 0.34 | 2.61 ± 1.02 | 92.34 ± 40.47 | 8.49 ± 4.37 |
| GC (132) | 4.55 ± 1.04 | 1.64 ± 1.26 | 1.27 ± 0.39 | 2.79 ± 0.85 | 83.00 ± 28.88 | 7.24 ± 4.06 | |
| CC (249) | 4.58 ± 1.04 | 1.64 ± 1.00 | 1.29 ± 0.45 | 2.76 ± 0.81 | 86.55 ± 29.90 | 6.97 ± 3.70 | |
|
| 0.866 | 0.371 | 0.855 | 0.927 | 0.364 | 0.335 | |
| Control | GG (24) | 4.78 ± 0.67 | 1.71 ± 1.38 | 1.37 ± 0.28 | 3.09 ± 0.61 | 71.54 ± 9.31 | 6.06 ± 1.83 |
| GC (136) | 4.98 ± 0.83 | 1.62 ± 1.31 | 1.37 ± 0.32 | 3.34 ± 0.72 | 70.68 ± 13.46 | 5.87 ± 1.84 | |
| CC (249) | 4.94 ± 0.87 | 1.68 ± 1.17 | 1.37 ± 0.39 | 3.26 ± 0.76 | 70.87 ± 13.57 | 5.96 ± 1.97 | |
|
| 0.594 | 0.327 | 0.724 | 0.352 | 0.949 | 0.641 | |
SNP single nucleotide polymorphism, TC total cholesterol, TG triglyceride, HDL-C high-density lipoprotein cholesterol, LDL-C low density lipoprotein cholesterol, CRE creatinine, FBG fasting blood glucose. The value was presented as mean ± SD and significance (p < 0.05) was determined by the Kruskal–Wallis test
The p values for interactions of genotypes and age, drinking and smoking, on lipid levels and the risk of CHD
| SNP | Factor | TC | TG | HDL-C | LDL-C | CRE | FBG |
|---|---|---|---|---|---|---|---|
| rs1867624 | Drinking | 0.140 | 0.391 | 0.778 | 0.037 | 0.528 | 0.642 |
| Smoking | 0.957 | 0.470 | 0.936 | 0.485 | 0.684 | 0.667 | |
| Age | 0.010 | 0.041 | 0.930 | 0.075 | 0.020 | 0.756 | |
| Sex | 0.096 | 0.005 | 0.483 | 0.656 | 0.028 | 0.005 | |
| Hypertension | 0.567 | 0.003 | 0.270 | 0.284 | 0.738 | 0.311 | |
| rs2057482 | Drinking | 0.807 | 0.808 | 0.388 | 0.508 | 0.303 | 0.560 |
| Smoking | 0.945 | 0.241 | 0.346 | 0.482 | 0.921 | 0.394 | |
| Age | 0.229 | 0.640 | 0.175 | 0.329 | 0.621 | ||
| Sex | 0.265 | 0.019 | 0.234 | 0.687 | 0.186 | 0.032 | |
| Hypertension | 0.009 | 0.207 | 0.194 | 0.244 | 0.278 | 0.121 | |
| rs3739998 | Drinking | 0.484 | 0.331 | 0.559 | 0.880 | 0.900 | 0.111 |
| Smoking | 0.669 | 0.040 | 0.555 | 0.356 | 0.906 | 0.175 | |
| Age | 0.004 | 0.002 | 0.115 | 0.055 | 0.779 | 0.576 | |
| Sex | 0.492 | 0.344 | 0.014 | 0.904 | 0.131 | ||
| Hypertension | 0.102 | 0.403 | 0.419 | 0.775 | 0.087 |
SNP single nucleotide polymorphism, TC total cholesterol, TG triglyceride, HDL-C high-density lipoprotein cholesterol, LDL-C low-density lipoprotein cholesterol, FBG fasting blood glucose, CRE creatinine, MI myocardial infarction. A p < 0.003 was considered statistically significant after Bonferroni correction
Fig. 1Flow diagram for the process of study selection
Characteristics of included studies on HIF1A polymorphisms and MI or CAD risk included in the meta-analysis
| Cite | First author | Year | Ethnicity | Country/Region | Case | Control | Genotype distribution | Genotyping methods | Disease | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||||||||
| rs2057482 C > T | |||||||||||||||
| CC | CT | TT | CC | CT | TT | ||||||||||
| Caucasian | |||||||||||||||
| [ | Hlatky | 2007 | Caucasian | California | 909 | 466 | 641 | 239 | 29 | 309 | 134 | 23 | TaqMan | AMI | 0.09 |
| [ | Lopez-Reyes | 2014 | Caucasian | Mexico | 949 | 676 | 809 | 134 | 6 | 547 | 120 | 9 | TaqMan | CAD | 0.41 |
| [ | Duran | 2015 | Caucasian | Spain | 497 | 111 | 339 | 148 | 10 | 70 | 38 | 3 | TaqMan | CAD | 0.42 |
| Asian | |||||||||||||||
| [ | Zheng | 2009 | Asian | Korea | 14 | 361 | 8 | 5 | 1 | 233 | 117 | 11 | SNaPShot | AMI | 0.42 |
| [ | Guo | 2017 | Asian | China | 589 | 860 | 476 | 93 | 20 | 726 | 125 | 9 | TaqMan | CAD | 0.17 |
| rs11549465 C > T | |||||||||||||||
| CC | CT | TT | CC | CT | TT | ||||||||||
| [ | Hlatky | 2007 | Caucasian | California | 909 | 466 | 747 | 151 | 11 | 358 | 97 | 11 | TaqMan | AMI | 0.16 |
| [ | Zheng | 2009 | Asian | Korea | 14 | 360 | 13 | 1 | 0 | 325 | 33 | 2 | SNaPShot | AMI | 0.26 |
| [ | Liu | 2013 | Asian | China | 356 | 213 | 346 | 10 | 0 | 208 | 5 | 0 | PCR | CAD | 0.86 |
| [ | Duran | 2015 | Caucasian | Spain | 518 | 112 | 402 | 111 | 5 | 84 | 26 | 2 | TaqMan | CAD | 0.99 |
| [ | Guo | 2017 | Asian | China | 589 | 860 | 324 | 10 | 255 | 449 | 11 | 400 | TaqMan | CAD |
|
| rs10873142 T > C | |||||||||||||||
| TT | TC | CC | TT | TC | CC | ||||||||||
| [ | Hlatky | 2007 | Caucasian | California | 909 | 466 | 549 | 305 | 55 | 249 | 174 | 43 | TaqMan | AMI | 0.12 |
| [ | Zheng | 2009 | Asian | Korea | 14 | 360 | 7 | 6 | 1 | 199 | 141 | 20 | SNaPShot | AMI | 0.44 |
| [ | Guo | 2017 | Asian | China | 609 | 860 | 355 | 209 | 45 | 442 | 347 | 71 | TaqMan | CAD | 0.80 |
| rs11549467 G > A | |||||||||||||||
| GG | GA | AA | GG | GA | AA | ||||||||||
| [ | Hlatky | 2007 | Caucasian | California | 909 | 466 | 900 | 9 | 0 | 456 | 10 | 0 | TaqMan | AMI | 0.81 |
| [ | Liu | 2013 | Asian | China | 356 | 213 | 340 | 16 | 0 | 204 | 9 | 0 | PCR | CAD | 0.75 |
| [ | Guo | 2017 | Asian | China | 589 | 860 | 326 | 17 | 246 | 454 | 19 | 387 | TaqMan | CAD |
|
| rs41508050 C > T | |||||||||||||||
| CC | CT | TT | CC | CT | TT | ||||||||||
| [ | Hlatky | 2007 | Caucasian | California | 909 | 466 | 903 | 6 | 0 | 457 | 9 | 0 | TaqMan | AMI | 0.83 |
| [ | Guo | 2017 | Asian | China | 589 | 860 | 581 | 8 | 0 | 843 | 17 | 0 | TaqMan | CAD | 0.77 |
aHWE in control; AMI acute myocardial infarction, CAD coronary artery disease
p values under 0.05 where shown in italic font
Fig. 2OR and 95% CIs of the associations between HIF1A rs2057482 CT polymorphism and MI or CAD in allele model. The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares indicates the study-specific weight (inverse of the variance). The diamond represents the pooled OR and 95% CI
Fig. 3OR and 95% CIs of the associations between HIF1A rs11549465 CT polymorphism and MI or CAD in allele model. The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares indicates the study-specific weight (inverse of the variance). The diamond represents the pooled OR and 95% CI