Literature DB >> 25954418

Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population.

Ryan Sullivan1, Robert Yao1, Randa Jarrar2, Jeffrey Buchhalter3, Graciela Gonzalez1.   

Abstract

When attempting to identify a specific epilepsy syndrome, physicians are often unable to make or agree upon a diagnosis. This is further complicated by the fact that the current classification and diagnosis of epilepsy requires specialized training and the use of resources not typically available to the average clinician, such as training to recognize specific seizure types and electroencephalography (EEG). Even when training and resources are available, expert epileptologists often find it challenging to identify seizure types and to distinguish between specific epilepsy syndromes. Information relevant to the diagnosis is present in narrative form in the medical record across several visits for an individual patient. Our ultimate goal is to create a system that will assist physicians in the diagnosis of epilepsy. This paper explores, as a baseline, text classification methods that attempt to correlate the narrative text features to the diagnosis of West syndrome (Infantile Spasms), using data from Phoenix Children's Hospital (PCH). We tested these methods against a dataset containing known (coded) diagnosis of West Syndrome, and found the best performing method to have a precision / recall / f-measure of 76.8 / 66.7 / 71.4 when evaluated with 10-fold cross validation.

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Year:  2014        PMID: 25954418      PMCID: PMC4419916     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  17 in total

1.  Glossary of descriptive terminology for ictal semiology: report of the ILAE task force on classification and terminology.

Authors:  W T Blume; H O Lüders; E Mizrahi; C Tassinari; W van Emde Boas; J Engel
Journal:  Epilepsia       Date:  2001-09       Impact factor: 5.864

2.  Basic principles of the ILAE syndrome classification.

Authors:  Peter Wolf
Journal:  Epilepsy Res       Date:  2006-07-25       Impact factor: 3.045

3.  Semistructured interview for seizure classification: agreement with physicians' diagnoses.

Authors:  R Ottman; W A Hauser; L Stallone
Journal:  Epilepsia       Date:  1990 Jan-Feb       Impact factor: 5.864

4.  ILAE classification of epilepsy syndromes.

Authors:  Jerome Engel
Journal:  Epilepsy Res       Date:  2006-07-05       Impact factor: 3.045

5.  Infantile spasms: little seizures, BIG consequences.

Authors:  W Donald Shields
Journal:  Epilepsy Curr       Date:  2006 May-Jun       Impact factor: 7.500

6.  A proposed diagnostic scheme for people with epileptic seizures and with epilepsy: report of the ILAE Task Force on Classification and Terminology.

Authors:  J Engel
Journal:  Epilepsia       Date:  2001-06       Impact factor: 5.864

Review 7.  Epilepsy across the spectrum: promoting health and understanding. A summary of the Institute of Medicine report.

Authors:  Mary Jane England; Catharyn T Liverman; Andrea M Schultz; Larisa M Strawbridge
Journal:  Epilepsy Behav       Date:  2012-10-05       Impact factor: 2.937

Review 8.  What can natural language processing do for clinical decision support?

Authors:  Dina Demner-Fushman; Wendy W Chapman; Clement J McDonald
Journal:  J Biomed Inform       Date:  2009-08-13       Impact factor: 6.317

9.  Clinical decision support with automated text processing for cervical cancer screening.

Authors:  Kavishwar B Wagholikar; Kathy L MacLaughlin; Michael R Henry; Robert A Greenes; Ronald A Hankey; Hongfang Liu; Rajeev Chaudhry
Journal:  J Am Med Inform Assoc       Date:  2012-04-29       Impact factor: 4.497

10.  Automatic construction of rule-based ICD-9-CM coding systems.

Authors:  Richárd Farkas; György Szarvas
Journal:  BMC Bioinformatics       Date:  2008-04-11       Impact factor: 3.169

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  4 in total

1.  Optimizing Corpus Creation for Training Word Embedding in Low Resource Domains: A Case Study in Autism Spectrum Disorder (ASD).

Authors:  Yang Gu; Gondy Leroy; Sydney Pettygrove; Maureen Kelly Galindo; Margaret Kurzius-Spencer
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

Review 2.  Aspiring to Unintended Consequences of Natural Language Processing: A Review of Recent Developments in Clinical and Consumer-Generated Text Processing.

Authors:  D Demner-Fushman; N Elhadad
Journal:  Yearb Med Inform       Date:  2016-11-10

3.  Using natural language processing to extract structured epilepsy data from unstructured clinic letters: development and validation of the ExECT (extraction of epilepsy clinical text) system.

Authors:  Beata Fonferko-Shadrach; Arron S Lacey; Angus Roberts; Ashley Akbari; Simon Thompson; David V Ford; Ronan A Lyons; Mark I Rees; William Owen Pickrell
Journal:  BMJ Open       Date:  2019-04-01       Impact factor: 2.692

4.  Can Big Data guide prognosis and clinical decisions in epilepsy?

Authors:  Xiaojin Li; Licong Cui; Guo-Qiang Zhang; Samden D Lhatoo
Journal:  Epilepsia       Date:  2021-02-02       Impact factor: 5.864

  4 in total

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