Literature DB >> 16685334

Quality assurance of medical ontologies.

J E Rogers1.   

Abstract

OBJECTIVE: To review the literature concerning the quality assurance of medical ontologies.
METHODS: scholar.google.com was searched using the search strings (+ontology +"quality assurance") and (+ontology +"evaluation/evaluating"). Relevant publications were selected by manual review. Other work already familiar to the author, or suggested by other researchers contacted by the author, were included. The papers were analysed for common themes.
RESULTS: Four broad properties of an ontology were identified that may be quality-assured: philosophical validity, compliance with meta-ontological commitments, 'content correctness', and fitness for purpose. Each published methodology addressed only a subset of these properties. 'Content' may be divided into domain knowledge content, and metadata describing either the provenance of domain knowledge content, or relationships between it and lexical information (e.g. for display and retrieval). 'Correctness' (whether of domain knowledge content or metadata) may also be further subdivided into truth, completeness, parsimony and internal consistency.
CONCLUSIONS: Understanding of how to assure the quality of ontologies, or evaluate their fitness for specific purposes, is improving but remains poor. A combination of methodologies is required, but tools to support a comprehensive quality assurance programme remain lacking. Perfect quality of an ontology is not provable and may not be desirable: an ontology compliant with all current philosophical theories, following necessary ontological commitments, and with entirely 'correct' content, may be too complex to be directly usable or useful. The extent to which an ontology's fitness for purpose is predicted or influenced by its other properties remains to be determined. Field studies of ontologies in use, including interrater effects, are required.

Mesh:

Year:  2006        PMID: 16685334

Source DB:  PubMed          Journal:  Methods Inf Med        ISSN: 0026-1270            Impact factor:   2.176


  23 in total

1.  Achieving high research reporting quality through the use of computational ontologies.

Authors:  Amrapali Zaveri; Luciana Cofiel; Jatin Shah; Shreyasee Pradhan; Edwin Chan; Olivier Dameron; Ricardo Pietrobon; Beng Ti Ang
Journal:  Neuroinformatics       Date:  2010-12

Review 2.  Bio-ontologies: current trends and future directions.

Authors:  Olivier Bodenreider; Robert Stevens
Journal:  Brief Bioinform       Date:  2006-08-09       Impact factor: 11.622

3.  Topological analysis of large-scale biomedical terminology structures.

Authors:  Michael E Bales; Yves A Lussier; Stephen B Johnson
Journal:  J Am Med Inform Assoc       Date:  2007-08-21       Impact factor: 4.497

4.  Biomedical ontologies in action: role in knowledge management, data integration and decision support.

Authors:  O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

Review 5.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

6.  Development and evaluation of an ontology for guiding appropriate antibiotic prescribing.

Authors:  Tiffani J Bright; E Yoko Furuya; Gilad J Kuperman; James J Cimino; Suzanne Bakken
Journal:  J Biomed Inform       Date:  2011-10-11       Impact factor: 6.317

7.  Reasoning based quality assurance of medical ontologies: a case study.

Authors:  Matthew Horridge; Bijan Parsia; Natalya F Noy; Mark A Musenm
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

8.  Deriving an abstraction network to support quality assurance in OCRe.

Authors:  Christopher Ochs; Ankur Agrawal; Yehoshua Perl; Michael Halper; Samson W Tu; Simona Carini; Ida Sim; Natasha Noy; Mark Musen; James Geller
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

9.  A UML profile for the OBO relation ontology.

Authors:  Gabriela D A Guardia; Ricardo Z N Vêncio; Cléver R G de Farias
Journal:  BMC Genomics       Date:  2012-10-19       Impact factor: 3.969

10.  Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE.

Authors:  Astrid Duque-Ramos; Manuel Quesada-Martínez; Miguela Iniesta-Moreno; Jesualdo Tomás Fernández-Breis; Robert Stevens
Journal:  J Biomed Semantics       Date:  2016-10-17
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