Literature DB >> 25954364

Extracting Concepts Related to Homelessness from the Free Text of VA Electronic Medical Records.

Adi V Gundlapalli1, Marjorie E Carter1, Guy Divita1, Shuying Shen1, Miland Palmer2, Brett South1, B S Begum Durgahee1, Andrew Redd1, Matthew Samore1.   

Abstract

Mining the free text of electronic medical records (EMR) using natural language processing (NLP) is an effective method of extracting information not always captured in administrative data. We sought to determine if concepts related to homelessness, a non-medical condition, were amenable to extraction from the EMR of Veterans Affairs (VA) medical records. As there were no off-the-shelf products, a lexicon of terms related to homelessness was created. A corpus of free text documents from outpatient encounters was reviewed to create the reference standard for NLP training and testing. V3NLP Framework was used to detect instances of lexical terms and was compared to the reference standard. With a positive predictive value of 77% for extracting relevant concepts, this study demonstrates the feasibility of extracting positively asserted concepts related to homelessness from the free text of medical records.

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Mesh:

Year:  2014        PMID: 25954364      PMCID: PMC4419940     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  19 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Veteran's affairs hospital discharge databases coded serious bacterial infections accurately.

Authors:  Sebastian Schneeweiss; Ari Robicsek; Richard Scranton; Dan Zuckerman; Daniel H Solomon
Journal:  J Clin Epidemiol       Date:  2006-12-18       Impact factor: 6.437

Review 3.  Extracting information from textual documents in the electronic health record: a review of recent research.

Authors:  S M Meystre; G K Savova; K C Kipper-Schuler; J F Hurdle
Journal:  Yearb Med Inform       Date:  2008

4.  Detecting earlier indicators of homelessness in the free text of medical records.

Authors:  Andrew Redd; Marjorie Carter; Guy Divita; Shuying Shen; Miland Palmer; Matthew Samore; Adi V Gundlapalli
Journal:  Stud Health Technol Inform       Date:  2014

5.  Lexical methods for managing variation in biomedical terminologies.

Authors:  A T McCray; S Srinivasan; A C Browne
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

6.  Validation of ICD-9 codes with a high positive predictive value for incident strokes resulting in hospitalization using Medicaid health data.

Authors:  Christianne L Roumie; Edward Mitchel; Patricia S Gideon; Cristina Varas-Lorenzo; Jordi Castellsague; Marie R Griffin
Journal:  Pharmacoepidemiol Drug Saf       Date:  2008-01       Impact factor: 2.890

7.  Agreement between administrative files and written medical records: a case of the Department of Veterans Affairs.

Authors:  T M Kashner
Journal:  Med Care       Date:  1998-09       Impact factor: 2.983

8.  Co-occurring medical and mental illness and substance use disorders among veteran clinic users with spinal cord injury patients with complexities.

Authors:  R Banerjea; P A Findley; B Smith; T Findley; U Sambamoorthi
Journal:  Spinal Cord       Date:  2009-05-05       Impact factor: 2.772

9.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors:  Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal:  BMC Med Inform Decis Mak       Date:  2006-07-26       Impact factor: 2.796

10.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

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  11 in total

1.  Applying Machine Learning to Linked Administrative and Clinical Data to Enhance the Detection of Homelessness among Vulnerable Veterans.

Authors:  Emily Brignone; Jamison D Fargo; Rebecca K Blais; Adi V Gundlapalli
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Longitudinal analysis of social and behavioral determinants of health in the EHR: exploring the impact of patient trajectories and documentation practices.

Authors:  Daniel J Feller; Jason Zucker; Oliver Bear Don't Walk; Michael T Yin; Peter Gordon; Noémie Elhadad
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

3.  Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.

Authors:  Hannah Eyre; Alec B Chapman; Kelly S Peterson; Jianlin Shi; Patrick R Alba; Makoto M Jones; Tamára L Box; Scott L DuVall; Olga V Patterson
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

4.  CDS in a Learning Health Care System: Identifying Physicians' Reasons for Rejection of Best-Practice Recommendations in Pneumonia through Computerized Clinical Decision Support.

Authors:  Barbara E Jones; Dave S Collingridge; Caroline G Vines; Herman Post; John Holmen; Todd L Allen; Peter Haug; Charlene R Weir; Nathan C Dean
Journal:  Appl Clin Inform       Date:  2019-01-02       Impact factor: 2.342

Review 5.  Clinical information extraction applications: A literature review.

Authors:  Yanshan Wang; Liwei Wang; Majid Rastegar-Mojarad; Sungrim Moon; Feichen Shen; Naveed Afzal; Sijia Liu; Yuqun Zeng; Saeed Mehrabi; Sunghwan Sohn; Hongfang Liu
Journal:  J Biomed Inform       Date:  2017-11-21       Impact factor: 6.317

6.  Automatic health record review to help prioritize gravely ill Social Security disability applicants.

Authors:  Kenneth Abbott; Yen-Yi Ho; Jennifer Erickson
Journal:  J Am Med Inform Assoc       Date:  2017-07-01       Impact factor: 4.497

7.  Extracting Clinical Features From Dictated Ambulatory Consult Notes Using a Commercially Available Natural Language Processing Tool: Pilot, Retrospective, Cross-Sectional Validation Study.

Authors:  Jeremy Petch; Jane Batt; Joshua Murray; Muhammad Mamdani
Journal:  JMIR Med Inform       Date:  2019-11-01

8.  Development and assessment of a natural language processing model to identify residential instability in electronic health records' unstructured data: a comparison of 3 integrated healthcare delivery systems.

Authors:  Elham Hatef; Masoud Rouhizadeh; Claudia Nau; Fagen Xie; Christopher Rouillard; Mahmoud Abu-Nasser; Ariadna Padilla; Lindsay Joe Lyons; Hadi Kharrazi; Jonathan P Weiner; Douglas Roblin
Journal:  JAMIA Open       Date:  2022-02-16

9.  Adaptation of an NLP system to a new healthcare environment to identify social determinants of health.

Authors:  Ruth M Reeves; Lee Christensen; Jeremiah R Brown; Michael Conway; Maxwell Levis; Glenn T Gobbel; Rashmee U Shah; Christine Goodrich; Iben Ricket; Freneka Minter; Andrew Bohm; Bruce E Bray; Michael E Matheny; Wendy Chapman
Journal:  J Biomed Inform       Date:  2021-06-24       Impact factor: 8.000

10.  Simplified data science approach to extract social and behavioural determinants: a retrospective chart review.

Authors:  Andrew Teng; Adam Wilcox
Journal:  BMJ Open       Date:  2022-01-18       Impact factor: 2.692

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