Literature DB >> 35308962

Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.

Hannah Eyre1,2, Alec B Chapman1,2, Kelly S Peterson2,3, Jianlin Shi2, Patrick R Alba1,2, Makoto M Jones1,2, Tamára L Box3, Scott L DuVall1,2, Olga V Patterson1,2.   

Abstract

Despite impressive success of machine learning algorithms in clinical natural language processing (cNLP), rule-based approaches still have a prominent role. In this paper, we introduce medspaCy, an extensible, open-source cNLP library based on spaCy framework that allows flexible integration of rule-based and machine learning-based algorithms adapted to clinical text. MedspaCy includes a variety of components that meet common cNLP needs such as context analysis and mapping to standard terminologies. By utilizing spaCy's clear and easy-to-use conventions, medspaCy enables development of custom pipelines that integrate easily with other spaCy-based modules. Our toolkit includes several core components and facilitates rapid development of pipelines for clinical text. ©2021 AMIA - All rights reserved.

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Year:  2022        PMID: 35308962      PMCID: PMC8861690     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


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