Literature DB >> 25939627

Maximum a posteriori estimation of crystallographic phases in X-ray diffraction tomography.

Doĝa Gürsoy1, Tekin Biçer2, Jonathan D Almer3, Raj Kettimuthu2, Stuart R Stock4, Francesco De Carlo3.   

Abstract

A maximum a posteriori approach is proposed for X-ray diffraction tomography for reconstructing three-dimensional spatial distribution of crystallographic phases and orientations of polycrystalline materials. The approach maximizes the a posteriori density which includes a Poisson log-likelihood and an a priori term that reinforces expected solution properties such as smoothness or local continuity. The reconstruction method is validated with experimental data acquired from a section of the spinous process of a porcine vertebra collected at the 1-ID-C beamline of the Advanced Photon Source, at Argonne National Laboratory. The reconstruction results show significant improvement in the reduction of aliasing and streaking artefacts, and improved robustness to noise and undersampling compared to conventional analytical inversion approaches. The approach has the potential to reduce data acquisition times, and significantly improve beamtime efficiency.
© 2015 The Author(s) Published by the Royal Society. All rights reserved.

Keywords:  biomineralization; crystalline phases; diffraction tomography; image reconstruction; maximum a posteriori estimation

Mesh:

Year:  2015        PMID: 25939627      PMCID: PMC4424486          DOI: 10.1098/rsta.2014.0392

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  10 in total

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Review 3.  Iterative reconstruction techniques in emission computed tomography.

Authors:  Jinyi Qi; Richard M Leahy
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Journal:  IEEE Trans Med Imaging       Date:  1990       Impact factor: 10.048

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Journal:  IEEE Trans Med Imaging       Date:  1990       Impact factor: 10.048

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Authors:  Doǧa Gürsoy; Tekin Biçer; Antonio Lanzirotti; Matthew G Newville; Francesco De Carlo
Journal:  Opt Express       Date:  2015-04-06       Impact factor: 3.894

9.  Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data.

Authors:  Francesco De Carlo; Doga Gürsoy; Federica Marone; Mark Rivers; Dilworth Y Parkinson; Faisal Khan; Nicholas Schwarz; David J Vine; Stefan Vogt; Sophie-Charlotte Gleber; Suresh Narayanan; Matt Newville; Tony Lanzirotti; Yue Sun; Young Pyo Hong; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2014-10-04       Impact factor: 2.616

10.  TomoPy: a framework for the analysis of synchrotron tomographic data.

Authors:  Dogˇa Gürsoy; Francesco De Carlo; Xianghui Xiao; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2014-08-01       Impact factor: 2.616

  10 in total
  4 in total

Review 1.  Techniques to assess bone ultrastructure organization: orientation and arrangement of mineralized collagen fibrils.

Authors:  Marios Georgiadis; Ralph Müller; Philipp Schneider
Journal:  J R Soc Interface       Date:  2016-06       Impact factor: 4.118

2.  Microstructure and energy dispersive diffraction reconstruction of 3D patterns of crystallographic texture in a shark centrum.

Authors:  Stuart R Stock; Paul E Morse; Michala K Stock; Kelsey C James; Lisa J Natanson; Haiyan Chen; Pavel D Shevchenko; Evan R Maxey; Olga A Antipova; Jun-Sang Park
Journal:  J Med Imaging (Bellingham)       Date:  2022-02-02

3.  Trace: a high-throughput tomographic reconstruction engine for large-scale datasets.

Authors:  Tekin Bicer; Doğa Gürsoy; Vincent De Andrade; Rajkumar Kettimuthu; William Scullin; Francesco De Carlo; Ian T Foster
Journal:  Adv Struct Chem Imaging       Date:  2017-01-28

4.  Quantifying the hydroxyapatite orientation near the ossification front in a piglet femoral condyle using X-ray diffraction tensor tomography.

Authors:  Fredrik K Mürer; Basab Chattopadhyay; Aldritt Scaria Madathiparambil; Kim Robert Tekseth; Marco Di Michiel; Marianne Liebi; Magnus B Lilledahl; Kristin Olstad; Dag W Breiby
Journal:  Sci Rep       Date:  2021-01-25       Impact factor: 4.379

  4 in total

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