Literature DB >> 25925680

Trauma in silico: Individual-specific mathematical models and virtual clinical populations.

David Brown1, Rami A Namas2, Khalid Almahmoud2, Akram Zaaqoq3, Joydeep Sarkar1, Derek A Barclay2, Jinling Yin2, Ali Ghuma2, Andrew Abboud2, Gregory Constantine4, Gary Nieman5, Ruben Zamora6, Steven C Chang1, Timothy R Billiar2, Yoram Vodovotz7.   

Abstract

Trauma-induced critical illness is driven by acute inflammation, and elevated systemic interleukin-6 (IL-6) after trauma is a biomarker of adverse outcomes. We constructed a multicompartment, ordinary differential equation model that represents a virtual trauma patient. Individual-specific variants of this model reproduced both systemic inflammation and outcomes of 33 blunt trauma survivors, from which a cohort of 10,000 virtual trauma patients was generated. Model-predicted length of stay in the intensive care unit, degree of multiple organ dysfunction, and IL-6 area under the curve as a function of injury severity were in concordance with the results from a validation cohort of 147 blunt trauma patients. In a subcohort of 98 trauma patients, those with high-IL-6 single-nucleotide polymorphisms (SNPs) exhibited higher plasma IL-6 levels than those with low IL-6 SNPs, matching model predictions. Although IL-6 could drive mortality in individual virtual patients, simulated outcomes in the overall cohort were independent of the propensity to produce IL-6, a prediction verified in the 98-patient subcohort. In silico randomized clinical trials suggested a small survival benefit of IL-6 inhibition, little benefit of IL-1β inhibition, and worse survival after tumor necrosis factor-α inhibition. This study demonstrates the limitations of extrapolating from reductionist mechanisms to outcomes in individuals and populations and demonstrates the use of mechanistic simulation in complex diseases.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25925680     DOI: 10.1126/scitranslmed.aaa3636

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN: 1946-6234            Impact factor:   17.956


  26 in total

1.  Evaluating optimal therapy robustness by virtual expansion of a sample population, with a case study in cancer immunotherapy.

Authors:  Syndi Barish; Michael F Ochs; Eduardo D Sontag; Jana L Gevertz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

2.  Inflammation and Disease: Modelling and Modulation of the Inflammatory Response to Alleviate Critical Illness.

Authors:  Judy D Day; Chase Cockrell; Rami Namas; Ruben Zamora; Gary An; Yoram Vodovotz
Journal:  Curr Opin Syst Biol       Date:  2018-08-23

Review 3.  Solving Immunology?

Authors:  Yoram Vodovotz; Ashley Xia; Elizabeth L Read; Josep Bassaganya-Riera; David A Hafler; Eduardo Sontag; Jin Wang; John S Tsang; Judy D Day; Steven H Kleinstein; Atul J Butte; Matthew C Altman; Ross Hammond; Stuart C Sealfon
Journal:  Trends Immunol       Date:  2016-12-13       Impact factor: 16.687

4.  An Enrichment Strategy Yields Seven Novel Single Nucleotide Polymorphisms Associated With Mortality and Altered Th17 Responses Following Blunt Trauma.

Authors:  Lukas Schimunek; Rami A Namas; Jinling Yin; Dongmei Liu; Derek Barclay; Fayten El-Dehaibi; Andrew Abboud; Haley Lindberg; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2018-03       Impact factor: 3.454

5.  Inferring Tissue-Specific, TLR4-Dependent Type 17 Immune Interactions in Experimental Trauma/Hemorrhagic Shock and Resuscitation Using Computational Modeling.

Authors:  Ashti M Shah; Ruben Zamora; Sebastian Korff; Derek Barclay; Jinling Yin; Fayten El-Dehaibi; Timothy R Billiar; Yoram Vodovotz
Journal:  Front Immunol       Date:  2022-05-19       Impact factor: 8.786

Review 6.  Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-Derived Mediators from Computational Models of Trauma-Induced Inflammation.

Authors:  Rami A Namas; Qi Mi; Rajaie Namas; Khalid Almahmoud; Akram M Zaaqoq; Othman Abdul-Malak; Nabil Azhar; Judy Day; Andrew Abboud; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  Antioxid Redox Signal       Date:  2015-12-10       Impact factor: 8.401

7.  Reverse Engineering the Inflammatory "Clock": From Computational Modeling to Rational Resetting.

Authors:  Yoram Vodovotz
Journal:  Drug Discov Today Dis Models       Date:  2017-04-15

8.  Mathematical Modeling of Early Cellular Innate and Adaptive Immune Responses to Ischemia/Reperfusion Injury and Solid Organ Allotransplantation.

Authors:  Judy D Day; Diana M Metes; Yoram Vodovotz
Journal:  Front Immunol       Date:  2015-09-25       Impact factor: 7.561

9.  Computational Analysis Supports an Early, Type 17 Cell-Associated Divergence of Blunt Trauma Survival and Mortality.

Authors:  Andrew Abboud; Rami A Namas; Mostafa Ramadan; Qi Mi; Khalid Almahmoud; Othman Abdul-Malak; Nabil Azhar; Akram Zaaqoq; Rajaie Namas; Derek A Barclay; Jinling Yin; Jason Sperry; Andrew Peitzman; Ruben Zamora; Richard L Simmons; Timothy R Billiar; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2016-11       Impact factor: 7.598

Review 10.  The Use of Multiplexing to Identify Cytokine and Chemokine Networks in the Immune-Inflammatory Response to Trauma.

Authors:  Jillian Bonaroti; Sultan Abdelhamid; Upendra Kar; Jason Sperry; Ruben Zamora; Rami Ahmd Namas; Todd McKinley; Yoram Vodovotz; Timothy Billiar
Journal:  Antioxid Redox Signal       Date:  2021-05-19       Impact factor: 7.468

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