Literature DB >> 25920493

A rural worker infected with a bovine-prevalent genotype of Campylobacter fetus subsp. fetus supports zoonotic transmission and inconsistency of MLST and whole-genome typing.

G Iraola1, L Betancor, L Calleros, P Gadea, G Algorta, S Galeano, P Muxi, G Greif, R Pérez.   

Abstract

Whole-genome characterisation in clinical microbiology enables to detect trends in infection dynamics and disease transmission. Here, we report a case of bacteraemia due to Campylobacter fetus subsp. fetus in a rural worker under cancer treatment that was diagnosed with cellulitis; the patient was treated with antibiotics and recovered. The routine typing methods were not able to identify the microorganism causing the infection, so it was further analysed by molecular methods and whole-genome sequencing. The multi-locus sequence typing (MLST) revealed the presence of the bovine-associated ST-4 genotype. Whole-genome comparisons with other C. fetus strains revealed an inconsistent phylogenetic position based on the core genome, discordant with previous ST-4 strains. To the best of our knowledge, this is the first C. fetus subsp. fetus carrying the ST-4 isolated from humans and represents a probable case of zoonotic transmission from cattle.

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Year:  2015        PMID： 25920493     DOI： 10.1007/s10096-015-2393-y

Source DB:  PubMed          Journal:  Eur J Clin Microbiol Infect Dis        ISSN： 0934-9723            Impact factor:   3.267


  13 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals.

Authors:  D Linton; R J Owen; J Stanley
Journal:  Res Microbiol       Date:  1996 Nov-Dec       Impact factor: 3.992

3.  Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires reevaluation of current diagnostics.

Authors:  Linda van der Graaf-van Bloois; William G Miller; Emma Yee; Martine Rijnsburger; Jaap A Wagenaar; Birgitta Duim
Journal:  J Clin Microbiol       Date:  2014-09-17       Impact factor: 5.948

4.  Evaluation of a PCR assay for identification and differentiation of Campylobacter fetus subspecies.

Authors:  S Hum; K Quinn; J Brunner; S L On
Journal:  Aust Vet J       Date:  1997-11       Impact factor: 1.281

5.  A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.

Authors:  Martin T Swain; Isheng J Tsai; Samual A Assefa; Chris Newbold; Matthew Berriman; Thomas D Otto
Journal:  Nat Protoc       Date:  2012-06-07       Impact factor: 13.491

Review 6.  Campylobacter fetus infections in humans: exposure and disease.

Authors:  Jaap A Wagenaar; Marcel A P van Bergen; Martin J Blaser; Robert V Tauxe; Diane G Newell; Jos P M van Putten
Journal:  Clin Infect Dis       Date:  2014-02-18       Impact factor: 9.079

7.  Campylobacter fetus subspecies fetus cellulitis associated with bacteremia in debilitated hosts.

Authors:  S Ichiyama; S Hirai; T Minami; Y Nishiyama; S Shimizu; K Shimokata; M Ohta
Journal:  Clin Infect Dis       Date:  1998-08       Impact factor: 9.079

8.  Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles.

Authors:  Collette Fitzgerald; Zheng Chao Tu; Mary Patrick; Tracy Stiles; Andy J Lawson; Monica Santovenia; Maarten J Gilbert; Marcel van Bergen; Kevin Joyce; Janet Pruckler; Steven Stroika; Birgitta Duim; William G Miller; Vladimir Loparev; Jan C Sinnige; Patricia I Fields; Robert V Tauxe; Martin J Blaser; Jaap A Wagenaar
Journal:  Int J Syst Evol Microbiol       Date:  2014-06-04       Impact factor: 2.747

9.  Application of a multiplex PCR assay for Campylobacter fetus detection and subspecies differentiation in uncultured samples of aborted bovine fetuses.

Authors:  Gregorio Iraola; Martín Hernández; Lucía Calleros; Fernando Paolicchi; Silvia Silveyra; Alejandra Velilla; Luis Carretto; Eliana Rodríguez; Ruben Pérez
Journal:  J Vet Sci       Date:  2012-12       Impact factor: 1.672

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  9 in total

Review 1.  Pathogenomics of Emerging Campylobacter Species.

Authors:  Daniela Costa; Gregorio Iraola
Journal:  Clin Microbiol Rev       Date:  2019-07-03       Impact factor: 26.132

2.  Occupations at risk of contracting zoonoses of public health significance in Québec.

Authors:  Ariane Adam-Poupart; Laurie-Maude Drapeau; Sadjia Bekal; Geneviève Germain; Alejandra Irace-Cima; Marie-Pascale Sassine; Audrey Simon; Julio Soto; Karine Thivierge; France Tissot
Journal:  Can Commun Dis Rep       Date:  2021-01-29

3.  Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production.

Authors:  Linda van der Graaf-van Bloois; Birgitta Duim; William G Miller; Ken J Forbes; Jaap A Wagenaar; Aldert Zomer
Journal:  BMC Genomics       Date:  2016-09-06       Impact factor: 3.969

4.  A novel real-time PCR assay for quantitative detection of Campylobacter fetus based on ribosomal sequences.

Authors:  Gregorio Iraola; Ruben Pérez; Laura Betancor; Ana Marandino; Claudia Morsella; Alejandra Méndez; Fernando Paolicchi; Alessandra Piccirillo; Gonzalo Tomás; Alejandra Velilla; Lucía Calleros
Journal:  BMC Vet Res       Date:  2016-12-15       Impact factor: 2.741

5.  Phylogenomic Analysis of Campylobacter fetus Reveals a Clonal Structure of Insertion Element ISCfe1 Positive Genomes.

Authors:  Mostafa Y Abdel-Glil; Helmut Hotzel; Herbert Tomaso; Jörg Linde
Journal:  Front Microbiol       Date:  2020-11-12       Impact factor: 5.640

6.  Genomic and Phenotypic Characterization of Campylobacter fetus subsp. venerealis Strains.

Authors:  Marta F Silva; Ana L Pereira; Maria J Fraqueza; Gonçalo Pereira; Luísa Mateus; Luís Lopes-da-Costa; Elisabete Silva
Journal:  Microorganisms       Date:  2021-02-09

7.  Comparative Genomics of Campylobacter fetus from Reptiles and Mammals Reveals Divergent Evolution in Host-Associated Lineages.

Authors:  Maarten J Gilbert; William G Miller; Emma Yee; Aldert L Zomer; Linda van der Graaf-van Bloois; Collette Fitzgerald; Ken J Forbes; Guillaume Méric; Samuel K Sheppard; Jaap A Wagenaar; Birgitta Duim
Journal:  Genome Biol Evol       Date:  2016-07-02       Impact factor: 3.416

8.  Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota.

Authors:  Gregorio Iraola; Samuel C Forster; Nitin Kumar; Philippe Lehours; Sadjia Bekal; Francisco J García-Peña; Fernando Paolicchi; Claudia Morsella; Helmut Hotzel; Po-Ren Hsueh; Ana Vidal; Simon Lévesque; Wataru Yamazaki; Claudia Balzan; Agueda Vargas; Alessandra Piccirillo; Bonnie Chaban; Janet E Hill; Laura Betancor; Luis Collado; Isabelle Truyers; Anne C Midwinter; Hatice T Dagi; Francis Mégraud; Lucía Calleros; Ruben Pérez; Hugo Naya; Trevor D Lawley
Journal:  Nat Commun       Date:  2017-11-08       Impact factor: 14.919

9.  Phylogenomic analysis for Campylobacter fetus ocurring in Argentina.

Authors:  Pablo Daniel Farace; José Matías Irazoqui; Claudia Graciela Morsella; Juan Agustín García; María Alejandra Méndez; Fernando Alberto Paolicchi; Ariel Fernando Amadio; Andrea Karina Gioffré
Journal:  Vet World       Date:  2021-05-13
  9 in total

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