Literature DB >> 25920443

2015 Guidelines for Establishing Genetically Modified Rat Models for Cardiovascular Research.

Michael J Flister1, Jeremy W Prokop, Jozef Lazar, Mary Shimoyama, Melinda Dwinell, Aron Geurts.   

Abstract

The rat has long been a key physiological model for cardiovascular research, most of the inbred strains having been previously selected for susceptibility or resistance to various cardiovascular diseases (CVD). These CVD rat models offer a physiologically relevant background on which candidates of human CVD can be tested in a more clinically translatable experimental setting. However, a diverse toolbox for genetically modifying the rat genome to test molecular mechanisms has only recently become available. Here, we provide a high-level description of several strategies for developing genetically modified rat models of CVD.

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Year:  2015        PMID: 25920443      PMCID: PMC4475456          DOI: 10.1007/s12265-015-9626-4

Source DB:  PubMed          Journal:  J Cardiovasc Transl Res        ISSN: 1937-5387            Impact factor:   4.132


  75 in total

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3.  Whole-rat conditional gene knockout via genome editing.

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Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

4.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:  Richard A Gibbs; George M Weinstock; Michael L Metzker; Donna M Muzny; Erica J Sodergren; Steven Scherer; Graham Scott; David Steffen; Kim C Worley; Paula E Burch; Geoffrey Okwuonu; Sandra Hines; Lora Lewis; Christine DeRamo; Oliver Delgado; Shannon Dugan-Rocha; George Miner; Margaret Morgan; Alicia Hawes; Rachel Gill; Robert A Holt; Mark D Adams; Peter G Amanatides; Holly Baden-Tillson; Mary Barnstead; Soo Chin; Cheryl A Evans; Steve Ferriera; Carl Fosler; Anna Glodek; Zhiping Gu; Don Jennings; Cheryl L Kraft; Trixie Nguyen; Cynthia M Pfannkoch; Cynthia Sitter; Granger G Sutton; J Craig Venter; Trevor Woodage; Douglas Smith; Hong-Mei Lee; Erik Gustafson; Patrick Cahill; Arnold Kana; Lynn Doucette-Stamm; Keith Weinstock; Kim Fechtel; Robert B Weiss; Diane M Dunn; Eric D Green; Robert W Blakesley; Gerard G Bouffard; Pieter J De Jong; Kazutoyo Osoegawa; Baoli Zhu; Marco Marra; Jacqueline Schein; Ian Bosdet; Chris Fjell; Steven Jones; Martin Krzywinski; Carrie Mathewson; Asim Siddiqui; Natasja Wye; John McPherson; Shaying Zhao; Claire M Fraser; Jyoti Shetty; Sofiya Shatsman; Keita Geer; Yixin Chen; Sofyia Abramzon; William C Nierman; Paul H Havlak; Rui Chen; K James Durbin; Amy Egan; Yanru Ren; Xing-Zhi Song; Bingshan Li; Yue Liu; Xiang Qin; Simon Cawley; Kim C Worley; A J Cooney; Lisa M D'Souza; Kirt Martin; Jia Qian Wu; Manuel L Gonzalez-Garay; Andrew R Jackson; Kenneth J Kalafus; Michael P McLeod; Aleksandar Milosavljevic; Davinder Virk; Andrei Volkov; David A Wheeler; Zhengdong Zhang; Jeffrey A Bailey; Evan E Eichler; Eray Tuzun; Ewan Birney; Emmanuel Mongin; Abel Ureta-Vidal; Cara Woodwark; Evgeny Zdobnov; Peer Bork; Mikita Suyama; David Torrents; Marina Alexandersson; Barbara J Trask; Janet M Young; Hui Huang; Huajun Wang; Heming Xing; Sue Daniels; Darryl Gietzen; Jeanette Schmidt; Kristian Stevens; Ursula Vitt; Jim Wingrove; Francisco Camara; M Mar Albà; Josep F Abril; Roderic Guigo; Arian Smit; Inna Dubchak; Edward M Rubin; Olivier Couronne; Alexander Poliakov; Norbert Hübner; Detlev Ganten; Claudia Goesele; Oliver Hummel; Thomas Kreitler; Young-Ae Lee; Jan Monti; Herbert Schulz; Heike Zimdahl; Heinz Himmelbauer; Hans Lehrach; Howard J Jacob; Susan Bromberg; Jo Gullings-Handley; Michael I Jensen-Seaman; Anne E Kwitek; Jozef Lazar; Dean Pasko; Peter J Tonellato; Simon Twigger; Chris P Ponting; Jose M Duarte; Stephen Rice; Leo Goodstadt; Scott A Beatson; Richard D Emes; Eitan E Winter; Caleb Webber; Petra Brandt; Gerald Nyakatura; Margaret Adetobi; Francesca Chiaromonte; Laura Elnitski; Pallavi Eswara; Ross C Hardison; Minmei Hou; Diana Kolbe; Kateryna Makova; Webb Miller; Anton Nekrutenko; Cathy Riemer; Scott Schwartz; James Taylor; Shan Yang; Yi Zhang; Klaus Lindpaintner; T Dan Andrews; Mario Caccamo; Michele Clamp; Laura Clarke; Valerie Curwen; Richard Durbin; Eduardo Eyras; Stephen M Searle; Gregory M Cooper; Serafim Batzoglou; Michael Brudno; Arend Sidow; Eric A Stone; J Craig Venter; Bret A Payseur; Guillaume Bourque; Carlos López-Otín; Xose S Puente; Kushal Chakrabarti; Sourav Chatterji; Colin Dewey; Lior Pachter; Nicolas Bray; Von Bing Yap; Anat Caspi; Glenn Tesler; Pavel A Pevzner; David Haussler; Krishna M Roskin; Robert Baertsch; Hiram Clawson; Terrence S Furey; Angie S Hinrichs; Donna Karolchik; William J Kent; Kate R Rosenbloom; Heather Trumbower; Matt Weirauch; David N Cooper; Peter D Stenson; Bin Ma; Michael Brent; Manimozhiyan Arumugam; David Shteynberg; Richard R Copley; Martin S Taylor; Harold Riethman; Uma Mudunuri; Jane Peterson; Mark Guyer; Adam Felsenfeld; Susan Old; Stephen Mockrin; Francis Collins
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

5.  Generation of rat mutants using a coat color-tagged Sleeping Beauty transposon system.

Authors:  Baisong Lu; Aron M Geurts; Christophe Poirier; Deborah C Petit; Wilbur Harrison; Paul A Overbeek; Colin E Bishop
Journal:  Mamm Genome       Date:  2007-06-08       Impact factor: 2.957

6.  Identifying multiple causative genes at a single GWAS locus.

Authors:  Michael J Flister; Shirng-Wern Tsaih; Caitlin C O'Meara; Bradley Endres; Matthew J Hoffman; Aron M Geurts; Melinda R Dwinell; Jozef Lazar; Howard J Jacob; Carol Moreno
Journal:  Genome Res       Date:  2013-09-04       Impact factor: 9.043

7.  The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.

Authors:  Jennifer R Smith; Carissa A Park; Rajni Nigam; Stanley Jf Laulederkind; G Thomas Hayman; Shur-Jen Wang; Timothy F Lowry; Victoria Petri; Jeff De Pons; Marek Tutaj; Weisong Liu; Elizabeth A Worthey; Mary Shimoyama; Melinda R Dwinell
Journal:  J Biomed Semantics       Date:  2013-10-08

8.  Rapid generation of mouse models with defined point mutations by the CRISPR/Cas9 system.

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Journal:  Sci Rep       Date:  2014-06-23       Impact factor: 4.379

9.  The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.

Authors:  Mary Shimoyama; Jeff De Pons; G Thomas Hayman; Stanley J F Laulederkind; Weisong Liu; Rajni Nigam; Victoria Petri; Jennifer R Smith; Marek Tutaj; Shur-Jen Wang; Elizabeth Worthey; Melinda Dwinell; Howard Jacob
Journal:  Nucleic Acids Res       Date:  2014-10-29       Impact factor: 19.160

10.  Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA.

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Journal:  Sci Rep       Date:  2013-11-27       Impact factor: 4.379

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  13 in total

1.  A Natural Model of Mouse Cardiac Myocyte Senescence.

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Journal:  J Cardiovasc Transl Res       Date:  2016-09-15       Impact factor: 4.132

Review 2.  Sex, Gender, and Sex Hormones in Pulmonary Hypertension and Right Ventricular Failure.

Authors:  James Hester; Corey Ventetuolo; Tim Lahm
Journal:  Compr Physiol       Date:  2019-12-18       Impact factor: 9.090

Review 3.  Genome sequencing in the clinic: the past, present, and future of genomic medicine.

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Journal:  Physiol Genomics       Date:  2018-05-04       Impact factor: 3.107

4.  Mapping genetic modifiers of radiation-induced cardiotoxicity to rat chromosome 3.

Authors:  Rachel A Schlaak; Anne Frei; Aronne M Schottstaedt; Shirng-Wern Tsaih; Brian L Fish; Leanne Harmann; Qian Liu; Tracy Gasperetti; Meetha Medhora; Paula E North; Jennifer L Strande; Yunguang Sun; Hallgeir Rui; Michael J Flister; Carmen Bergom
Journal:  Am J Physiol Heart Circ Physiol       Date:  2019-03-08       Impact factor: 4.733

Review 5.  Reducing Senescent Cell Burden in Aging and Disease.

Authors:  Robert J Pignolo; João F Passos; Sundeep Khosla; Tamara Tchkonia; James L Kirkland
Journal:  Trends Mol Med       Date:  2020-04-17       Impact factor: 11.951

Review 6.  Chromosome Y genetic variants: impact in animal models and on human disease.

Authors:  J W Prokop; C F Deschepper
Journal:  Physiol Genomics       Date:  2015-08-18       Impact factor: 3.107

7.  Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation.

Authors:  Dustin R Masser; David R Stanford; Niran Hadad; Cory B Giles; Jonathan D Wren; William E Sonntag; Arlan Richardson; Willard M Freeman
Journal:  Age (Dordr)       Date:  2016-04-18

Review 8.  Mapping Mammary Tumor Traits in the Rat.

Authors:  Michael J Flister; Amit Joshi; Carmen Bergom; Hallgeir Rui
Journal:  Methods Mol Biol       Date:  2019

Review 9.  Exploring human disease using the Rat Genome Database.

Authors:  Mary Shimoyama; Stanley J F Laulederkind; Jeff De Pons; Rajni Nigam; Jennifer R Smith; Marek Tutaj; Victoria Petri; G Thomas Hayman; Shur-Jen Wang; Omid Ghiasvand; Jyothi Thota; Melinda R Dwinell
Journal:  Dis Model Mech       Date:  2016-10-01       Impact factor: 5.758

Review 10.  Experimental models of cardiac physiology and pathology.

Authors:  Jae Gyun Oh; Changwon Kho; Roger J Hajjar; Kiyotake Ishikawa
Journal:  Heart Fail Rev       Date:  2019-07       Impact factor: 4.214

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