| Literature DB >> 25918995 |
J E Salvatore1, A C Edwards1, J N McClintick2, T B Bigdeli1, A Adkins1, F Aliev3, H J Edenberg2, T Foroud4, V Hesselbrock5, J Kramer6, J I Nurnberger7, M Schuckit8, J A Tischfield9, X Xuei2, D M Dick1.
Abstract
Adult antisocial behavior (AAB) is moderately heritable, relatively common and has adverse consequences for individuals and society. We examined the molecular genetic basis of AAB in 1379 participants from a case-control study in which the cases met criteria for alcohol dependence. We also examined whether genes of interest were expressed in human brain. AAB was measured using a count of the number of Antisocial Personality Disorder criteria endorsed under criterion A from the Diagnostic and Statistical Manual of Mental Disorders, 4th Edition (DSM-IV). Participants were genotyped on the Illumina Human 1M BeadChip. In total, all single-nucleotide polymorphisms (SNPs) accounted for 25% of the variance in AAB, although this estimate was not significant (P=0.09). Enrichment tests indicated that more significantly associated genes were over-represented in seven gene sets, and most were immune related. Our most highly associated SNP (rs4728702, P=5.77 × 10(-7)) was located in the protein-coding adenosine triphosphate-binding cassette, sub-family B (MDR/TAP), member 1 (ABCB1). In a gene-based test, ABCB1 was genome-wide significant (q=0.03). Expression analyses indicated that ABCB1 was robustly expressed in the brain. ABCB1 has been implicated in substance use, and in post hoc tests we found that variation in ABCB1 was associated with DSM-IV alcohol and cocaine dependence criterion counts. These results suggest that ABCB1 may confer risk across externalizing behaviors, and are consistent with previous suggestions that immune pathways are associated with externalizing behaviors. The results should be tempered by the fact that we did not replicate the associations for ABCB1 or the gene sets in a less-affected independent sample.Entities:
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Year: 2015 PMID: 25918995 PMCID: PMC4462601 DOI: 10.1038/tp.2015.36
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Figure 1Association results from the genome-wide association study of adult antisocial behavior. On the x axis are single-nucleotide polymorphism (SNP) positions for chromosomes 1–22. On the y axis are negative logarithms (base 10) of the P-values for each SNP, whereby higher values indicate smaller P-values.
Top SNPs (P<5 × 10-6) from a GWAS of adult antisocial behavior
| P | |||||||
|---|---|---|---|---|---|---|---|
| rs4728702 | 7 | 87180678 | A | T | 0.43 | −0.36 | 5.77E−07 |
| rs1016793 | 7 | 87199182 | G | A | 0.59 | 0.37 | 5.91E−07 |
| rs1128503 | 7 | 87179601 | A | G | 0.43 | −0.36 | 5.97E−07 |
| rs4728700 | 7 | 87171659 | T | C | 0.45 | −0.36 | 6.08E−07 |
| rs868755 | 7 | 87189930 | T | G | 0.41 | −0.37 | 6.15E−07 |
| rs10276036 | 7 | 87180198 | C | T | 0.43 | −0.36 | 6.22E−07 |
| rs3789244 | 7 | 87181849 | G | T | 0.43 | −0.36 | 6.22E−07 |
| rs2235026 | 7 | 87182882 | T | C | 0.43 | −0.36 | 6.32E−07 |
| rs2235021 | 7 | 87199264 | C | A | 0.57 | 0.36 | 7.15E−07 |
| rs2235020 | 7 | 87199265 | T | A | 0.57 | 0.36 | 7.30E−07 |
| rs2235046 | 7 | 87174066 | T | C | 0.45 | −0.35 | 8.20E−07 |
| rs10985923 | 9 | 126038684 | G | T | 0.93 | 0.71 | 9.10E−07 |
| rs6959435 | 7 | 87158185 | G | T | 0.43 | −0.36 | 9.82E−07 |
| rs2373586 | 7 | 87157583 | A | C | 0.43 | −0.36 | 9.85E−07 |
| rs62817660 | 7 | 87200529 | G | A | 0.57 | 0.35 | 1.03E−06 |
| rs12539098 | 7 | 87200639 | T | C | 0.57 | 0.35 | 1.04E−06 |
| rs11975994 | 7 | 87192731 | G | A | 0.43 | −0.35 | 1.05E−06 |
| rs1016794 | 7 | 87198459 | G | A | 0.57 | 0.35 | 1.05E−06 |
| rs2520464 | 7 | 87201086 | C | T | 0.57 | 0.35 | 1.06E−06 |
| rs2032582 | 7 | 87160618 | A | C | 0.45 | −0.35 | 1.23E−06 |
| rs1202167 | 7 | 87197059 | C | T | 0.57 | 0.35 | 1.37E−06 |
| rs6504898 | 17 | 52427312 | G | T | 0.56 | −0.36 | 1.42E−06 |
| rs1202168 | 7 | 87195962 | G | A | 0.57 | 0.35 | 1.53E−06 |
| rs1202169 | 7 | 87195850 | T | C | 0.57 | 0.35 | 1.55E−06 |
| rs2235013 | 7 | 87178626 | C | T | 0.51 | −0.34 | 1.83E−06 |
| rs2235033 | 7 | 87179143 | A | G | 0.51 | −0.34 | 1.83E−06 |
| rs12704364 | 7 | 87181175 | C | T | 0.51 | −0.34 | 1.83E−06 |
| rs6961665 | 7 | 87181418 | C | A | 0.51 | −0.34 | 1.83E−06 |
| rs58738000 | 2 | 11704426 | C | G | 0.92 | −0.66 | 1.87E−06 |
| rs6504902 | 17 | 52433609 | T | C | 0.56 | −0.35 | 1.88E−06 |
| rs4810138 | 20 | 57144231 | G | C | 0.33 | 0.38 | 1.90E−06 |
| rs2235027 | 7 | 87182779 | G | T | 0.51 | −0.34 | 1.91E−06 |
| rs10234411 | 7 | 87164892 | T | A | 0.45 | −0.34 | 1.94E−06 |
| rs4148738 | 7 | 87163049 | C | T | 0.45 | −0.34 | 1.96E−06 |
| rs68152859 | 2 | 11699747 | G | A | 0.92 | −0.67 | 2.02E−06 |
| rs10985911 | 9 | 126007069 | T | C | 0.93 | 0.68 | 2.04E−06 |
| rs5020877 | 2 | 11694370 | A | G | 0.92 | −0.67 | 2.12E−06 |
| rs142285425 | 9 | 125951669 | A | G | 0.93 | 0.67 | 2.34E−06 |
| rs10985900 | 9 | 125954349 | T | C | 0.93 | 0.67 | 2.34E−06 |
| rs7870519 | 9 | 125917716 | A | T | 0.93 | 0.67 | 2.34E−06 |
| rs62579000 | 9 | 125973531 | C | T | 0.93 | 0.67 | 2.34E−06 |
| rs10985892 | 9 | 125908794 | T | C | 0.93 | 0.67 | 2.35E−06 |
| rs10985908 | 9 | 125986335 | C | T | 0.93 | 0.67 | 2.35E−06 |
| rs62578996 | 9 | 125919594 | G | A | 0.93 | 0.66 | 2.56E−06 |
| rs10808072 | 7 | 87176463 | A | G | 0.51 | −0.33 | 2.69E−06 |
| rs55980995 | 5 | 121875565 | A | G | 0.88 | −0.52 | 2.84E−06 |
| rs6893509 | 5 | 121860590 | T | G | 0.89 | −0.55 | 2.92E−06 |
| rs28368138 | 9 | 21207334 | C | G | 0.95 | −0.82 | 2.97E−06 |
| rs1202165 | 7 | 87197594 | G | A | 0.59 | 0.35 | 3.00E−06 |
| rs12002466 | 9 | 125865899 | T | C | 0.93 | 0.65 | 3.40E−06 |
| rs180996880 | 2 | 11693084 | C | A | 0.92 | −0.65 | 3.41E−06 |
| rs74602468 | 5 | 121863973 | C | T | 0.90 | −0.56 | 3.48E−06 |
| rs67242082 | 6 | 94334202 | A | G | 0.86 | −0.48 | 3.66E−06 |
| rs76585835 | 5 | 121867413 | G | A | 0.90 | −0.56 | 3.83E−06 |
| rs41277128 | 9 | 125610975 | G | A | 0.93 | 0.66 | 3.85E−06 |
| rs7033878 | 9 | 125618080 | T | G | 0.93 | 0.66 | 3.88E−06 |
| rs62580884 | 9 | 125619738 | C | A | 0.93 | 0.66 | 3.88E−06 |
| rs10985798 | 9 | 125624520 | G | C | 0.93 | 0.66 | 3.88E−06 |
| rs62580922 | 9 | 125631594 | T | C | 0.93 | 0.66 | 3.88E−06 |
| rs10985807 | 9 | 125652376 | C | T | 0.93 | 0.66 | 3.88E−06 |
| rs78303085 | 9 | 125869322 | T | A | 0.93 | 0.66 | 3.96E−06 |
| rs62578960 | 9 | 125869287 | G | A | 0.93 | 0.66 | 3.97E−06 |
| rs80233205 | 5 | 121871869 | G | A | 0.90 | −0.56 | 4.03E−06 |
| rs55919124 | 5 | 121880314 | T | A | 0.90 | −0.56 | 4.05E−06 |
| rs62580923 | 9 | 125635317 | A | T | 0.93 | 0.65 | 4.13E−06 |
| rs6413435 | 19 | 18497137 | G | A | 0.83 | −0.44 | 4.18E−06 |
| rs6948766 | 7 | 87191246 | G | A | 0.52 | −0.33 | 4.32E−06 |
| rs11763872 | 7 | 87217215 | T | C | 0.49 | 0.33 | 4.40E−06 |
| rs7034822 | 9 | 125621808 | G | A | 0.93 | 0.65 | 4.46E−06 |
| rs12378760 | 9 | 125661283 | T | C | 0.93 | 0.65 | 4.46E−06 |
| rs17149293 | 5 | 121864140 | G | T | 0.90 | −0.55 | 4.53E−06 |
| rs76809806 | 5 | 121873792 | G | A | 0.90 | −0.55 | 4.66E−06 |
| rs12979706 | 19 | 18495424 | G | A | 0.83 | −0.44 | 4.75E−06 |
| rs12514901 | 5 | 121878119 | T | G | 0.89 | −0.54 | 4.84E−06 |
| rs78479583 | 5 | 121871427 | G | A | 0.90 | −0.55 | 4.96E−06 |
Abbreviations: AF, allele frequency of the effect allele; BETA, regression coefficient; CHR, chromosome; EFF, effect allele; GWAS, genome-wide association study; NEFF, non-effect allele; POS, position (in base pairs); SNP, single-nucleotide polymorphism.
Figure 2(a) Association results from the genome-wide association study (GWAS) of adult antisocial behavior (AAB) for a 200-kb region surrounding rs4728702 in ABCB1 on chromosome 7. (b) Association results from the GWAS of AAB for a 200-kb region surrounding rs28368138 on chromosome 9p. Four genes for type I interferon (IFNA7, IFNA10, IFNA16 and IFNA17) depicted here reached nominal significance (P-value threshold of less than 1 × 10−4) in gene-based tests. (c) Association results from the GWAS of AAB for a 200-kb region surrounding rs10985923 on chromosome 9q. Five genes (STRBP, MIR600, RABGAP1, MIR600HG and ZBTB26) depicted here reached nominal significance (P-value threshold of less than 1 × 10−4) in gene-based tests. All plots were constructed using LocusZoom.[35] Shown on the x axis of all figures are position numbers, and on the y axis are the negative logarithms (base 10) of the P-values for each single-nucleotide polymorphism (SNP), whereby higher values indicate smaller P-values, and local estimates of recombination rates. SNPs are color coded to visualize the haplotype structure in this region, with orange and red coloring indicating SNPs higher in linkage disequilibrium (LD) and blue and green indicating SNPs lower in LD.
Top genes associated with adult antisocial behavior
| 7 | 1.42E−06 | 0.033 | 210 | |
| 1 | 1.28E−05 | 0.297 | 451 | |
| 7 | 2.06E−05 | 0.476 | — | |
| 9 | 2.34E−05 | 0.542 | — | |
| 9 | 2.53E−05 | 0.584 | NA | |
| 9 | 2.53E−05 | 0.584 | NA | |
| 9 | 3.55E−05 | 0.821 | 359 | |
| 2 | 3.85E−05 | 0.891 | 163 | |
| 9 | 3.88E−05 | 0.897 | 498 | |
| 9 | 4.28E−05 | 0.989 | 190 | |
| 9 | 4.55E−05 | 1.000 | — | |
| 9 | 7.97E−05 | 1.000 | 1228 | |
| 8 | 8.04E−05 | 1.000 | 281 | |
| 21 | 8.11E−05 | 1.000 | 155 | |
| 9 | 8.24E−05 | 1.000 | 153 | |
| 9 | 8.52E−05 | 1.000 | — | |
| 9 | 9.68E−05 | 1.000 | — |
Brain exp. is the maximum of average expression for nine brain regions; ‘—' is below background; NA indicates measurement not available because the gene was not present on array.
Notes: Gene P-value and gene q-value refer to the uncorrected P-values and the q-values based on a Benjamini and Hochberg false discovery rate for the gene-based tests. A gene was presumed to be expressed in the brain if the maximum expression level across the nine regions was higher than 16.0 because this is above the background signal for the arrays. Expression ranges from 5–20,140; median=108; 90th percentile=484. For comparison, the neurotransmitter receptor gene HTR1B (serotonin 1D beta receptor) that is normally expressed in the brain has a maximum expression of 182.
Canonical pathways and gene ontologies
| Cytokine activity | <0.0001 |
| Jak-STAT signaling pathway | <0.0001 |
| Toll-like receptor signaling pathway | 0.0005 |
| Antigen processing and presentation | 0.0008 |
| Hematopoietin interferon class D200 domain cytokine receptor binding | 0.002 |
| Natural killer cell-mediated cytotoxicity | 0.005 |
| Tryptophan metabolism | 0.05 |