| Literature DB >> 25916332 |
Claudia F Gasparini1, Heidi G Sutherland, Bridget Maher, Astrid J Rodriguez-Acevedo, Elhame Khlifi, Larisa M Haupt, Lyn R Griffiths.
Abstract
BACKGROUND: Migraine causes crippling attacks of severe head pain along with associated nausea, vomiting, photophobia and/or phonophobia. The aim of this study was to investigate single nucleotide polymorphisms (SNPs) in the adenosine deaminase, RNA-specific, B1 (ADARB1) and adenosine deaminase, RNA specific, B2 (ADARB2) genes in an Australian case-control Caucasian population for association with migraine. Both candidate genes are highly expressed in the central nervous system and fit criteria for migraine neuropathology. SNPs in the ADARB2 gene were previously found to be positively associated with migraine in a pedigree-based genome wide association study using the genetic isolate of Norfolk Island, Australia. The ADARB1 gene was also chosen for investigation due to its important function in editing neurotransmitter receptor transcripts.Entities:
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Year: 2015 PMID: 25916332 PMCID: PMC4397221 DOI: 10.1186/s10194-015-0511-y
Source DB: PubMed Journal: J Headache Pain ISSN: 1129-2369 Impact factor: 7.277
SNPs in associated with migraine in the Norfolk Island pGWAS adapted from [11]
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| 10p15 | ADARB2 | 4 | rs10903399 | 1227868 | Downstream | C/T | 0.330 | 0.64 | 7.68E − 05 |
| rs1046914 | 1228206 | 3Prime UTR | G/A | 0.328 | 0.67 | 3.43E − 05 | |||
| rs2271275 | 1230968 | Non-synon | G/A | 0.368 | 0.65 | 2.67E − 05 | |||
| rs883248 | 1250184 | Intronic | G/A | 0.439 | 0.67 | 3.83E − 06 |
Figure 1Haplotype block of the 4 SNPs implicated in the ADARB2 gene in the Norfolk Island pGWAS sourced from Cox et al., 2012 [ 11 ].
Demographical characteristics of Migraine Cases and Controls
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| Age: Mean (range) | 46.4 (−18-67) | 44.4 (18–63) |
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| Male | 70 | 89 |
| Female | 221 | 225 |
| MA | 227 | N/A |
| MO | 64 | N/A |
MA - migraine with aura, MO - migraine without aura, N/A - not applicable.
TaqMan Assay and SNP information
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| C__15831699_10 | ADARB1 | rs2838771 | Chr.21: 46501576 | Transversion Substitution | C:G | G = 0.41 |
| C_1211569_1_ | ADARB1 | rs1051367 | Chr.21: 46641968 | Silent Mutation | A:G | G = 0.47 |
| C_15959830_10 | ADARB2 | rs2271275 | Chr.10: 1230968 | Missense Mutation | C:T | C = 0.34 |
| C_32118695_20 | ADARB2 | rs10903467 | Chr.10: 1535739 | Intron, Transition Substitution | C:T | T = 0.44 |
| C__30856132_20 | ADARB2 | rs11250642 | Chr.10: 1622644 | Intron, Transition Substitution | C:T | T = 0.50 |
aCEU MAF = HapMap Caucasian Minor Allele Frequency.
SNPs genotyped in and by Sequenom
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| rs407133 | F: 5’ ACGTTGGATGCCTGCTCTGCAGTAATGAAC 3’ | 45396317 | Intron | C:G | G 0.46 |
| R: 5’ ACGTTGGATGTCCTCCTCTCTTAACTCACG 3’ | ||||||
| E: 5’ TCGGACCAATGCTGA 3’ | ||||||
| rs422720 | F: 5’ ACGTTGGATGGGAAGCAGTACATGTTCATTG 3’ | 45403382 | Intron | A:C | C 0.36 | |
| R: 5’ ACGTTGGATGGACTAATGCAGATGATCACC 3’ | ||||||
| E: 5’ GGGTCAGTACATGTTCATTGTAAGAATT 3’ | ||||||
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| rs3793733 | F: 5’ ACGTTGGATGCAACTCCATGTCAAAAGTGC 3’ | 1411326 | Missense | G:A | A 0.01 |
| R: 5’ ACGTTGGATGATGCCAGGACTCAGGTGCTT 3’ | ||||||
| E: 5’CAGGAAGCATATTGTCAACCTTCCTC 3’ | ||||||
| rs7070629 | F: 5’ ACGTTGGATGGATGAAAAAAGGATGCCATAC 3’ | 1414938 | Intron | G:A | A 0.37 | |
| R: 5’ ACGTTGGATGCCTGTGATGCAGCTTCTCCT 3’ | ||||||
| E: 5’ ACCTTTGATGCAGCTTCTCCTGGCACA 3’ | ||||||
| rs10903479 | F: 5’ ACGTTGGATGAGAACGCAATGCACTCTTCC 3’ | 1581881 | Intron | A:T | T 0.40 | |
| R: 5’ ACGTTGGATGTCGGTTTTGGAGTCTAGAGG 3’ | ||||||
| E: 5’ CCTCATTGTCACAGAGT 3’ | ||||||
| rs7094094 | F: 5’ ACGTTGGATGTCTAGAAAATGCAGAAGGG 3’ | 1652840 | Intron | T:G | G 0.38 | |
| R: 5’ ACGTTGGATGCTTGGGCTATACTTTTTGTG 3’ | ||||||
| E: 5’CATTCAGTTGTTCTAATATTATATTGA 3’ | ||||||
| rs10903520 | F: 5’ ACGTTGGATGTTACTCCTTAAGTGGAAGGG 3’ | 1672481 | Intron | G:A | A 0.39 | |
| R: 5’ ACGTTGGATGACCATGATATCTACCCCTCC 3’ | ||||||
| E: 5’ AAAGAAGCAGGCGTT 3’ | ||||||
| rs884861 | F: 5’ ACGTTGGATGGAAAAACAGATAGACAAAGC 3’ | 1765662 | Intron | C:G | C 0.43 | |
| R: 5’ ACGTTGGATGCCCTGGAATAACTTCAGGGT 3’ | ||||||
| E: 5’ ACAGATAGACAAAGCAGAATATAT 3’ |
aCEU MAF = HapMap Caucasian Minor Allele Frequency.
Genotypic and allelic frequencies of migraine cases and controls and p-values derived from analysis for SNPs investigated in the and genes
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| 0.429 | 0.441 | 0.130 | 261 | 0.86 | 0.35 | 0.65 | |
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| 0.405 | 0.461 | 0.134 | 247 | 0.36 | G allele, 0.36 | |||
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| 0.178 | 0.519 | 0.303 | 264 | 0.95 | 0.44 | 0.35 | |
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| 0.179 | 0.529 | 0.292 | 291 | 0.44 | G allele, 0.44 | |||
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| 0.157 | 0.498 | 0.345 | 255 | 0.64 | 0.42 | 0.35 | |
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| 0.138 | 0.480 | 0.382 | 275 | 0.38 | C allele, 0.38 | |||
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| 0.277 | 0.530 | 0.193 | 274 | 0.53 | 0.46 | 0.40 | |
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| 0.320 | 0.493 | 0.187 | 300 | 0.43 | G allele, 0.43 | |||
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| 0.0 | 0.017 | 0.983 | 239 | b0.32 | 0.008 | 0.32 | |
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| 0.0 | 0.031 | 0.969 | 228 | 0.015 | A allele, 0.009 | |||
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| 0.138 | 0.466 | 0.395 | 253 | 0.70 | 0.37 | 0.41 | |
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| 0.125 | 0.444 | 0.430 | 279 | 0.35 | A allele, 0.37 | |||
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| 0.183 | 0.470 | 0.347 | 251 | 0.16 | 0.42 | 0.11 | |
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| 0.205 | 0.524 | 0.271 | 288 | 0.47 | T allele, 0.48 | |||
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| 0.195 | 0.489 | 0.316 | 266 | 0.33 | 0.44 | 0.15 | |
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| 0.153 | 0.490 | 0.357 | 294 | 0.40 | T allele, 0.40 | |||
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| 0.200 | 0.459 | 0.341 | 255 | 0.34 | 0.42 | 0.31 | |
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| 0.200 | 0.500 | 0.300 | 270 | 0.45 | T allele, 0.45 | |||
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| 0.100 | 0.420 | 0.480 | 246 | 0.83 | 0.37 | 0.62 | |
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| 0.104 | 0.442 | 0.454 | 269 | 0.33 | G allele, 0.37 | |||
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| 0.114 | 0.493 | 0.393 | 280 | 0.55 | 0.36 | 0.62 | |
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| 0.144 | 0.476 | 0.380 | 290 | 0.38 | A allele, 0.38 | |||
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| 0.161 | 0.435 | 0.404 | 248 | 0.16 | 0.38 | 0.05 | |
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| 0.220 | 0.440 | 0.340 | 273 | 0.44 | G allele, 0.43 | |||
aMAF = Minor allele frequency.
bHeterozygous GA genotype versus homozygous AA genotype only as no homozygous GG individuals were detected.