Literature DB >> 25914759

Spherical Hamiltonian Monte Carlo for Constrained Target Distributions.

Shiwei Lan1, Bo Zhou1, Babak Shahbaba1.   

Abstract

Statistical models with constrained probability distributions are abundant in machine learning. Some examples include regression models with norm constraints (e.g., Lasso), probit models, many copula models, and Latent Dirichlet Allocation (LDA) models. Bayesian inference involving probability distributions confined to constrained domains could be quite challenging for commonly used sampling algorithms. For such problems, we propose a novel Markov Chain Monte Carlo (MCMC) method that provides a general and computationally efficient framework for handling boundary conditions. Our method first maps the D-dimensional constrained domain of parameters to the unit ball [Formula: see text], then augments it to a D-dimensional sphere SD such that the original boundary corresponds to the equator of SD . This way, our method handles the constraints implicitly by moving freely on the sphere generating proposals that remain within boundaries when mapped back to the original space. To improve the computational efficiency of our algorithm, we divide the dynamics into several parts such that the resulting split dynamics has a partial analytical solution as a geodesic flow on the sphere. We apply our method to several examples including truncated Gaussian, Bayesian Lasso, Bayesian bridge regression, and a copula model for identifying synchrony among multiple neurons. Our results show that the proposed method can provide a natural and efficient framework for handling several types of constraints on target distributions.

Entities:  

Year:  2014        PMID: 25914759      PMCID: PMC4407381     

Source DB:  PubMed          Journal:  JMLR Workshop Conf Proc        ISSN: 1938-7288


  2 in total

1.  A semiparametric Bayesian model for detecting synchrony among multiple neurons.

Authors:  Babak Shahbaba; Bo Zhou; Shiwei Lan; Hernando Ombao; David Moorman; Sam Behseta
Journal:  Neural Comput       Date:  2014-06-12       Impact factor: 2.026

2.  Geodesic Monte Carlo on Embedded Manifolds.

Authors:  Simon Byrne; Mark Girolami
Journal:  Scand Stat Theory Appl       Date:  2013-09-13       Impact factor: 1.396

  2 in total
  4 in total

1.  Flexible Bayesian Dynamic Modeling of Correlation and Covariance Matrices.

Authors:  Shiwei Lan; Andrew Holbrook; Gabriel A Elias; Norbert J Fortin; Hernando Ombao; Babak Shahbaba
Journal:  Bayesian Anal       Date:  2019-11-04       Impact factor: 3.728

2.  A semiparametric Bayesian model for detecting synchrony among multiple neurons.

Authors:  Babak Shahbaba; Bo Zhou; Shiwei Lan; Hernando Ombao; David Moorman; Sam Behseta
Journal:  Neural Comput       Date:  2014-06-12       Impact factor: 2.026

3.  Hamiltonian Monte Carlo acceleration using surrogate functions with random bases.

Authors:  Cheng Zhang; Babak Shahbaba; Hongkai Zhao
Journal:  Stat Comput       Date:  2016-09-13       Impact factor: 2.559

4.  Gradient-based MCMC samplers for dynamic causal modelling.

Authors:  Biswa Sengupta; Karl J Friston; Will D Penny
Journal:  Neuroimage       Date:  2015-07-23       Impact factor: 6.556

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.