| Literature DB >> 25913413 |
Liang Sun1, Caiyou Hu2, Chenguang Zheng3, Yu Qian4, Qinghua Liang2, Zeping Lv2, Zezhi Huang5, KeYan Qi6, Huan Gong1, Zheng Zhang1, Jin Huang7, Qin Zhou2, Ze Yang1.
Abstract
Forkhead box class O (FOXO) transcription factors play a crucial role in longevity across species. Several polymorphisms in FOXO3 were previously reported to be associated with human longevity. However, only one Chinese replication study has been performed so far. To verify the role of FOXO3 in southern Chinese in the Red River Basin, a community-based case-control study was conducted, and seven polymorphisms were genotyped in 1336 participants, followed by a meta-analysis of eight case-control studies that included 5327 longevity cases and 4608 controls. In our case-control study, we found rs2802288*A and rs2802292*G were beneficial to longevity after Bonferroni correction (pallele = 0.005, OR = 1.266; pallele = 0.026, OR = 1.207). In addition, in the longevity group, carriers with rs2802288*A and rs2802292*G presented reduced HbA1c (p = 0.001), and homozygotes of rs2802292*GG presented improved HOMA-IR (p = 0.014). The meta-analysis further revealed the overall contribution of rs2802288*A and rs2802292*G to longevity. However, our stratified analysis revealed that rs2802292*G might act more strongly in Asians than Europeans, for enhancement of longevity. In conclusion, our study provides convincing evidence for a significant association between the rs2802288*A and rs2802292*G gene variants in FOXO3 and human longevity, and adds the Southern Chinese in the Red River Basin to the growing number of human replication populations.Entities:
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Year: 2015 PMID: 25913413 PMCID: PMC5386198 DOI: 10.1038/srep09852
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Genotype distribution and allele frequencies of FOXO3 polymorphisms in longevity and control subjects
| SNP | M/m | Group | MM | Mm | mm | MAF | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|
| G/A | Longevity | 199 (0.39) | 233 (0.46) | 74 (0.15) | 0.666 | 0.38 | 0.005 | 1.266 (1.075 − 1.491) | |
| Control | 374 (0.45) | 376 (0.45) | 80 (0.10) | 0.300 | 0.32 | ||||
| A/G | Longevity | 220 (0.43) | 235 (0.46) | 51 (0.10) | 0.306 | 0.33 | 0.589 | 1.147 (0.887 − 1.236) | |
| Control | 373 (0.45) | 378 (0.46) | 79 (0.10) | 0.232 | 0.32 | ||||
| T/G | Longevity | 205 (0.41) | 246 (0.49) | 54 (0.11) | 0.116 | 0.35 | 0.026 | 1.207 (1.022 − 1.424) | |
| Control | 393 (0.47) | 361 (0.43) | 76 (0.09) | 0.565 | 0.31 | ||||
| T/C | Longevity | 199 (0.39) | 245 (0.48) | 62 (0.12) | 0.312 | 0.36 | 0.009 | 1.244 (1.055 − 1.467) | |
| Control | 383 (0.46) | 370 (0.45) | 77 (0.09) | 0.359 | 0.32 | ||||
| T/C | Longevity | 350 (0.69) | 135 (0.27) | 21 (0.04) | 0.089 | 0.17 | 0.565 | 0.942 (0.768 − 1.155) | |
| Control | 548 (0.66) | 259 (0.31) | 23 (0.03) | 0.245 | 0.18 | ||||
| T/C | Longevity | 210 (0.42) | 236 (0.47) | 60 (0.12) | 0.610 | 0.35 | < 0.001 | 1.358 (1.149 − 1.605) | |
| Control | 417 (0.50) | 352 (0.42) | 61 (0.07) | 0.658 | 0.29 | ||||
| G/A | Longevity | 213 (0.42) | 235 (0.46) | 58 (0.11) | 0.573 | 0.35 | 0.013 | 1.235 (1.046 − 1.459) | |
| Control | 401 (0.48) | 359 (0.43) | 70 (0.08) | 0.409 | 0.30 |
aM/m: M = major allele, m = minor allele; b p value of Hardy-Weinberg equilibrium test; c MAF: minor allele frequency; d p value of Chi-squared test under model of allele contrast
Figure 1Effect size for longevity of rs2802292 and rs2802288 in FOXO3 according to varied age cutoff for longevity cases.
(A) rs2802292*G in FOXO3; (B) rs2802288*A in FOXO3
Characteristics of studies of rs2802288 and rs2802292 in FOXO3 included in the meta-analysis
| Study | Population | longevity group | control group | Genotype Methods | Significance | ||||
|---|---|---|---|---|---|---|---|---|---|
| Age range (years) | M | m | Age range (years) | M | m | ||||
| Anselmi CV (2009) | Europeans | 90–108 | 233 | 245 | 18–48 | 204 | 140 | Imputation | Yes |
| Soerensen M (2010) | Europeans | 92–93 | 1352 | 826 | NA | 949 | 523 | GoldenGate | No |
| Willcox BJ (2008) | Asians | 95–106 | 268 | 158 | 73–81 | 599 | 205 | TaqMan | Yes |
| Li Y (2009) | Asians | 102.3 ± 0.14 | 1062 | 460 | 47.1 ± 0.22 | 1605 | 507 | Sanger sequencing | Yes |
| Li XJ (2010) | Asians | 90–110 | 229 | 125 | 48–89 | 214 | 82 | TaqMan | Yes |
| This study | Asians | 80–105 | 656 | 354 | 30–75 | 1147 | 513 | PCR-HRM | Yes |
| Kuningas M (2007) | Europeans | 88–92 | 866 | 498 | 27–36 | 478 | 262 | MALDI-TOF | No |
| Flachsbart F (2009) | Europeans | 95–110 | 1202 | 860 | 60–75 | 899 | 563 | TaqMan | No |
| Flachsbart F (2009) | Europeans | > = 100 | 477 | 299 | 60–75 | 899 | 563 | TaqMan | Yes |
| Anselmi CV (2009) | Europeans | 90–109 | 475 | 485 | 18–48 | 362 | 308 | BeadChip | No |
| Li XJ (2010) | Asians | 90–110 | 227 | 127 | 48–89 | 213 | 83 | TaqMan | Yes |
| This study | Asians | 80–105 | 631 | 381 | 30–75 | 1124 | 536 | PCR-HRM | Yes |
aM = major allele, corresponding to rs2802292*T and rs2802288*G; b m = minor allele, corresponding to rs2802292*G and rs2802288*A; c comparisons based on allele-contrast model; d means ± standard error
Meta-analysis of rs2802288 and rs2802292 in FOXO3 in longevity stratified by ethnicities
| Population | N | Q test | Pooled OR (95%CI) | z | Begg's Test | Egger's Test | ||
|---|---|---|---|---|---|---|---|---|
| I | ||||||||
| overall | 6 | 0.026 | 60.9 | 1.340 (1.176 − 1.527) | 4.39 | < 0.001 | 0.452 | 0.118 |
| Asians | 4 | 0.142 | 44.9 | 1.385 (1.204 − 1.593) | 4.56 | < 0.001 | NA | NA |
| Europeans | 2 | 0.042 | 75.8 | 1.272 (0.930 − 1.741) | 1.51 | 0.132 | NA | NA |
| overall | 6 | 0.265 | 22.5 | 1.146 (1.065 − 1.233) | 3.63 | < 0.001 | 0.452 | 0.484 |
| Asians | 2 | 0.508 | < 0.1 | 1.298 (1.121 − 1.503) | 3.48 | 0.001 | NA | NA |
| Europeans | 4 | 0.502 | < 0.1 | 1.100 (1.010 − 1.197) | 2.19 | 0.028 | NA | NA |
aNumber of studies; b p value for heterogeneity; c p value for significance of z test; d p value = Begg's Test Pr > |z|; e p value = Eegg's Test Pr > |t|
Figure 2Forest plot (allele-contrast model) of the association between rs2802288*A allele and longevity stratified by ethnicities.
For each study, the estimate of OR and its 95% CI is plotted with a box and a horizontal line.
Figure 3Forest plot (allele-contrast model) of the association between rs2802292*G allele and longevity stratified by ethnicities.
For each study, the estimate of OR and its 95% CI is plotted with a box and a horizontal line.
Figure 4Begg's funnel plot of rs2802288*A and rs2802292*G to detect publication bias.
(A) rs2802292*G; (B) rs2802288*A. Each circle represents an individual study for the indicated association and whose size proportionally represents the weight of each study. logor, natural logarithm of OR; s.e., standard error; Perpendicular line, mean effect size.
Figure 5Sensitivity analyses by deleting each study to reflect the influence of the individual dataset to the pooled ORs in allele-contrast model.
(A) rs2802292*G; (B) rs2802288*A.