| Literature DB >> 25909077 |
Maria Ajjemami1, Sanaa Ouatou1, Hicham Charoute2, Malika Fakiri3, Houria Rhaissi4, Houda Benrahma1, Hassan Rouba1, Abdelhamid Barakat1.
Abstract
BACKGROUND: In this case-control study we investigated the relative contribution of commons APOA5 polymorphisms and haplotypes to the risk of metabolic syndrome in Moroccan patients.Entities:
Keywords: APOA5 gene; Haplotypes; Metabolic Syndrome; Polymorphisms
Year: 2015 PMID: 25909077 PMCID: PMC4407873 DOI: 10.1186/s40200-015-0160-3
Source DB: PubMed Journal: J Diabetes Metab Disord ISSN: 2251-6581
primers and restriction enzymes used for identification of APOA5 polymorphisms
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| forward (F) and reverse (R) primers | restriction enzymes | PCR-RFLP products | Reference |
|---|---|---|---|---|
| c.1259 T > C (rs 2266788) | F: 5’- TCA GTC CTT GAA AGT GGC CT-3’ R: 5’- ATG TAG TGG CAC AGG CTT CC -3’ PCR-product: 287 pb | BseGI | TT : 122 and 165 bp | [ |
| CC : 35, 87and 165 bp | ||||
| −1131 T > C (rs662799) | F: 5’-CCC CAG GAA CTG GAG CGA AATT-3’ R: 5’-TTC AAG CAG AGG GAA GCC TGT A -3’ PCR-product:396 bp | TruI | TT : 20, 105, 271 bp | [ |
| CC : 105 and 291 bp | ||||
| c.56C > G (rs3135506) | F: 5’- GGC TCT TCT TTC AGG TGG GTCTCCG -3’ R:5’- GCC TTT CCG TGC CTG GGT GGT-3’ PCR-product: 157 pb | Taq I | CC : 134 and 23 bp | [ |
| GG : 157 bp | ||||
| c.553G > T (rs 2075291) | F:5’-AGA CAC CAA GGC CCA GTT GCT GGG-3’ R: 5’- ATG CCG CTC ACC AGG CTC TCG GCG -3’ PCR-product: 138 pb | HaeIII | TT: 127 and 11 bp | [ |
| GG : 76, 51 and 11 bp |
Major clinical parameters of the patients with metabolic syndrome (MS) and control subjects (means ± SD)
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| 11.43 ± 1.31 | 13.00 ± 1.76 | <0.0001 |
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| 8.34 ± 6.34 | 8.43 ± 1.24 | <0.0001 |
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| 1.90 ± 0.38 | 2.01 ± 0.46 | 0.0356 |
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| 0.96 ± 0.33 | 1.54 ± 0.69 | <0.0001 |
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| 1.16 ± 0.34 | 1.28 ± 0.37 | 0.0063 |
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| 0.55 ± 0.12 | 0.48 ± 0.16 | 0.0001 |
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| 0.85 ± 0.09 | 1.31 ± 0.54 | <0.0001 |
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| 25.34 ± 2.93 | 31.91 ± 14.09 | <0.0001 |
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| 84.38 ± 10.35 | 100.47 ± 11.06 | <0.0001 |
HDL: high-density lipoprotein, LDL: low-density lipoprotein, BMI: body mass index.
Association between APOA5 genotypes and Metabolic Syndrome
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| Codominant | T/T | 65 (61.9%) | 48 (28.4%) | 1.00 | |
| T/C | 34 (32.4%) | 113 (66.9%) | 10.13 (4.65-22.06) | <0.0001 | ||
| C/C | 6 (5.7%) | 8 (4.7%) | 1.49 (0.37-6.00) | 0.575 | ||
| Dominant | T/T | 65 (61.9%) | 48 (28.4%) | 1.00 | ||
| T/C-C/C | 40 (38.1%) | 121 (71.6%) | 7.82 (3.79-16.14) | <0.0001 | ||
| Recessive | T/T-T/C | 99 (94.3%) | 161 (95.3%) | 1.00 | ||
| C/C | 6 (5.7%) | 8 (4.7%) | 0.52 (0.14-1.99) | 0.342 | ||
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| Codominant | C/C | 70 (68%) | 93 (53.1%) | 1.00 | |
| C/G | 28 (27.2%) | 64 (36.6%) | 2.13 (1.05-4.31) | 0.035 | ||
| G/G | 5 (4.8%) | 18 (10.3%) | 1.72 (0.48-6.21) | 0.407 | ||
| Dominant | C/C | 70 (68%) | 93 (53.1%) | 1.00 | ||
| C/G-G/G | 33 (32%) | 82 (46.9%) | 2.07 (1.07-4.03) | 0.032 | ||
| Recessive | C/C-C/G | 98 (95.2%) | 157 (89.7%) | 1.00 | ||
| G/G | 5 (4.8%) | 18 (10.3%) | 1.27 (0.37-4.36) | 0.701 | ||
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| Codominant | G/G | 86 (81.9%) | 150 (85.2%) | 1.00 | |
| G/T | 15 (14.3%) | 23 (13.1%) | 0.97 (0.38-2.48) | 0.943 | ||
| T/T | 4 (3.8%) | 3 (1.7%) | 0.27 (0.05-1.59) | 0.148 | ||
| Dominant | G/G | 86 (81.9%) | 150 (85.2%) | 1.00 | ||
| G/T-T/T | 19 (18.1%) | 26 (14.8%) | 0.73 (0.32-1.71) | 0.472 | ||
| Recessive | G/G-G/T | 101 (96.2%) | 173 (98.3%) | 1.00 | ||
| T/T | 4 (3.8%) | 3 (1.7%) | 0.26 (0.05-1.53) | 0.137 | ||
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| Codominant | T/T | 53 (51%) | 115 (65.7%) | 1.00 | |
| T/C | 29 (27.9%) | 28 (16%) | 0.56 (0.25-1.27) | 0.166 | ||
| C/C | 22 (21.1%) | 32 (18.3%) | 0.69 (0.32-1.52) | 0.365 | ||
| Dominant | T/T | 53 (51%) | 115 (65.7%) | 1.00 | ||
| T/C-C/C | 51 (49%) | 60 (34.3%) | 0.63 (0.33-1.17) | 0.143 | ||
| Recessive | T/T-T/C | 82 (78.8%) | 143 (81.7%) | 1.00 | ||
| C/C | 22 (21.1%) | 32 (18.3%) | 0.80 (0.38-1.68) | 0.561 |
a: ORs were adjusted for sexe, age and body mass index (BMI).
Comparisons of clinical and biochemical parameters of the study participants according to the APOA5 -1131 T > C, c.56C > G, c.553G > T and c.1259 T > C genotypes
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| 12.08 ± 1.63 | 12.60 ± 1.81 | 0.0162 | 12.37 ± 1.87 | 12.50 ± 1.65 | 0.5348 | 12.43 ± 1.74 | 12.37 ± 1.95 | 0.8487 | 12.48 ± 1.77 | 12.34 ± 1.79 | 0.5173 |
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| 8.75 ± 6.11 | 8.14 ± 1.21 | 0.7573 | 8.18 ± 1.21 | 8.71 ± 6.06 | 0.9794 | 8.47 ± 4.32 | 7.98 ± 1.16 | 0.1979 | 8.59 ± 5.07 | 8.10 ± 1.16 | 0.3322 |
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| 1.97 ± 0.39 | 1.96 ± 0.46 | 0.8041 | 1.98 ± 0.45 | 1.95 ± 0.42 | 0.5260 | 1.98 ± 0.42 | 1.94 ± 0.50 | 0.5905 | 1.98 ± 0.43 | 1.95 ± 0.44 | 0.6621 |
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| 1.23 ± 0.58 | 1.37 ± 0.68 | 0.0892 | 1.24 ± 0.55 | 1.44 ± 0.75 | 0.0435 | 1.31 ± 0.63 | 1.41 ± 0.70 | 0.3722 | 1.34 ± 0.68 | 1.29 ± 0.59 | 0.8394 |
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| 1.21 ± 0.33 | 1.26 ± 0.39 | 0.3161 | 1.23 ± 0.38 | 1.24 ± 0.35 | 0.9080 | 1.24 ± 0.37 | 1.23 ± 0.38 | 0.9020 | 1.24 ± 0.35 | 1.22 ± 0.39 | 0.6142 |
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| 0.54 ± 0.15 | 0.49 ± 0.15 | 0.0091 | 0.50 ± 0.14 | 0.51 ± 0.17 | 0.5918 | 0.51 ± 0.15 | 0.49 ± 0.14 | 0.5002 | 0.51 ± 0.16 | 0.50 ± 0.13 | 0.4028 |
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| 1.03 ± 0.34 | 1.20 ± 0.52 | 0.0295 | 1.11 ± 0.46 | 1.18 ± 0.51 | 0.3953 | 1.13 ± 0.47 | 1.17 ± 0.52 | 0.8328 | 1.16 ± 0.49 | 1.11 ± 0.46 | 0.2787 |
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| 30.06 ± 17.46 | 29.04 ± 5.06 | 0.2244 | 29.44 ± 14.81 | 29.48 ± 5.04 | 0.0617 | 29.72 ± 12.59 | 28.08 ± 5.05 | 0.4439 | 29.27 ± 5.35 | 29.67 ± 17.47 | 0.0639 |
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| 93.53 ± 13.00 | 94.95 ± 13.77 | 0.3919 | 92.75 ± 13.26 | 96.81 ± 13.18 | 0.0122 | 94.68 ± 13.09 | 93.29 ± 14.47 | 0.5213 | 95.73 ± 13.50 | 92.48 ± 12.92 | 0.0463 |
HDL: high-density lipoprotein, LDL: low-density lipoprotein, BMI: body mass index.
Association analysis of the APOA5 haplotypes
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| 0.3941 | 0.4749 | 0.6667 (0.406; 1.09 ) | 0.106 |
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| 0.2343 | 0.1485 | 3.223 (1.43; 7.25 ) | 0.00278 |
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| 0.1489 | 0.2295 | 0.6331 (0.352; 1.14 ) | 0.122 |
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| 0.1196 | 0.1129 | 1.013 (0.418; 2.45 ) | 0.978 |
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| 0.1032 | 0.03414 | 8.234 (1.6; 42.5 ) | 0.00534 |
a: ORs were adjusted for sexe, age and body mass index (BMI).
Association between APOA5 haplotypes with clinical and biochemical parameters
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| 12.47 ± 1.72 | 12.34 ± 1.86 | 0.5482 | 12.46 ± 1.89 | 12.40 ± 1.73 | 0.7790 | 12.55 ± 1.49 | 12.39 ± 1.82 | 0.5936 |
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| 8.62 ± 5.07 | 8.06 ± 1.14 | 0.2070 | 8.04 ± 1.24 | 8.54 ± 4.66 | 0.3589 | 8.07 ± 1.10 | 8.45 ± 4.30 | 0.5528 |
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| 1.98 ± 0.40 | 1.95 ± 0.49 | 0.5102 | 1.96 ± 0.48 | 1.97 ± 0.42 | 0.7929 | 2.04 ± 0.44 | 1.96 ± 0.43 | 0.2623 |
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| 1.34 ± 0.67 | 1.30 ± 0.60 | 0.9167 | 1.27 ± 0.62 | 1.34 ± 0.65 | 0.2034 | 1.43 ± 0.82 | 1.30 ± 0.61 | 0.4413 |
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| 1.23 ± 0.34 | 1.25 ± 0.40 | 0.6883 | 1.25 ± 0.40 | 1.23 ± 0.35 | 0.6162 | 1.34 ± 0.42 | 1.22 ± 0.36 | 0.0526 |
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| 0.51 ± 0.15 | 0.49 ± 0.15 | 0.2427 | 0.48 ± 0.14 | 0.52 ± 0.16 | 0.0868 | 0.51 ± 0.18 | 0.50 ± 0.14 | 0.7061 |
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| 1.17 ± 0.50 | 1.10 ± 0.46 | 0.0906 | 1.18 ± 0.51 | 1.12 ± −0.47 | 0.6943 | 1.17 ± 0.50 | 1.13 ± 0.48 | 0.6330 |
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| 29.09 ± 5.20 | 30.00 ± 17.40 | 0.4779 | 28.34 ± 5.01 | 29.91 ± 13.51 | 0.4044 | 30.39 ± 5.71 | 29.29 ± 12.48 | 0.0269 |
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| 94.43 ± 11.88 | 94.50 ± 15.24 | 0.9685 | 92.64 ± 13.12 | 95.19 ± 13.34 | 0.1459 | 98.64 ± 17.13 | 93.72 ± 12.41 | 0.0268 |
HDL: high-density lipoprotein, LDL: low-density lipoprotein, BMI: body mass index.