Literature DB >> 25902549

The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration.

Lihong Xiao1, Ge Yang1, Liechi Zhang1, Xinhua Yang2, Shuang Zhao2, Zhongzhong Ji1, Qing Zhou2, Min Hu2, Yu Wang1, Ming Chen2, Yu Xu1, Haijing Jin1, Xuan Xiao1, Guipeng Hu1, Fang Bao1, Yong Hu1, Ping Wan1, Legong Li1, Xin Deng3, Tingyun Kuang4, Chengbin Xiang5, Jian-Kang Zhu6, Melvin J Oliver7, Yikun He8.   

Abstract

"Drying without dying" is an essential trait in land plant evolution. Unraveling how a unique group of angiosperms, the Resurrection Plants, survive desiccation of their leaves and roots has been hampered by the lack of a foundational genome perspective. Here we report the ∼1,691-Mb sequenced genome of Boea hygrometrica, an important resurrection plant model. The sequence revealed evidence for two historical genome-wide duplication events, a compliment of 49,374 protein-coding genes, 29.15% of which are unique (orphan) to Boea and 20% of which (9,888) significantly respond to desiccation at the transcript level. Expansion of early light-inducible protein (ELIP) and 5S rRNA genes highlights the importance of the protection of the photosynthetic apparatus during drying and the rapid resumption of protein synthesis in the resurrection capability of Boea. Transcriptome analysis reveals extensive alternative splicing of transcripts and a focus on cellular protection strategies. The lack of desiccation tolerance-specific genome organizational features suggests the resurrection phenotype evolved mainly by an alteration in the control of dehydration response genes.

Entities:  

Keywords:  Boea hygrometrica; drought tolerance enhancement; genome; resurrection plant; vegetative desiccation tolerance

Mesh:

Substances:

Year:  2015        PMID: 25902549      PMCID: PMC4426394          DOI: 10.1073/pnas.1505811112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

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Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Effects of desiccation on photosynthesis pigments and the ELIP-like dsp 22 protein complexes in the resurrection plant Craterostigma plantagineum.

Authors:  J M. Alamillo; D Bartels
Journal:  Plant Sci       Date:  2001-05       Impact factor: 4.729

Review 3.  The evolutionary origin of orphan genes.

Authors:  Diethard Tautz; Tomislav Domazet-Lošo
Journal:  Nat Rev Genet       Date:  2011-08-31       Impact factor: 53.242

4.  Dehydration tolerance in plants.

Authors:  Melvin J Oliver; John C Cushman; Karen L Koster
Journal:  Methods Mol Biol       Date:  2010

5.  Genome size and the proportion of repeated nucleotide sequence DNA in plants.

Authors:  R B Flavell; M D Bennett; J B Smith; D B Smith
Journal:  Biochem Genet       Date:  1974-10       Impact factor: 1.890

Review 6.  ABA signal transduction at the crossroad of biotic and abiotic stress responses.

Authors:  Sung Chul Lee; Sheng Luan
Journal:  Plant Cell Environ       Date:  2011-10-31       Impact factor: 7.228

Review 7.  Towards a systems-based understanding of plant desiccation tolerance.

Authors:  John P Moore; Ngoc Tuan Le; Wolf F Brandt; Azeddine Driouich; Jill M Farrant
Journal:  Trends Plant Sci       Date:  2009-01-27       Impact factor: 18.313

8.  Retrotransposons and siRNA have a role in the evolution of desiccation tolerance leading to resurrection of the plant Craterostigma plantagineum.

Authors:  Tobias Hilbricht; Serena Varotto; Vittorio Sgaramella; Dorothea Bartels; Francesco Salamini; Antonella Furini
Journal:  New Phytol       Date:  2008-05-13       Impact factor: 10.151

9.  Genome sequence and analysis of the tuber crop potato.

Authors:  Xun Xu; Shengkai Pan; Shifeng Cheng; Bo Zhang; Desheng Mu; Peixiang Ni; Gengyun Zhang; Shuang Yang; Ruiqiang Li; Jun Wang; Gisella Orjeda; Frank Guzman; Michael Torres; Roberto Lozano; Olga Ponce; Diana Martinez; Germán De la Cruz; S K Chakrabarti; Virupaksh U Patil; Konstantin G Skryabin; Boris B Kuznetsov; Nikolai V Ravin; Tatjana V Kolganova; Alexey V Beletsky; Andrei V Mardanov; Alex Di Genova; Daniel M Bolser; David M A Martin; Guangcun Li; Yu Yang; Hanhui Kuang; Qun Hu; Xingyao Xiong; Gerard J Bishop; Boris Sagredo; Nilo Mejía; Wlodzimierz Zagorski; Robert Gromadka; Jan Gawor; Pawel Szczesny; Sanwen Huang; Zhonghua Zhang; Chunbo Liang; Jun He; Ying Li; Ying He; Jianfei Xu; Youjun Zhang; Binyan Xie; Yongchen Du; Dongyu Qu; Merideth Bonierbale; Marc Ghislain; Maria del Rosario Herrera; Giovanni Giuliano; Marco Pietrella; Gaetano Perrotta; Paolo Facella; Kimberly O'Brien; Sergio E Feingold; Leandro E Barreiro; Gabriela A Massa; Luis Diambra; Brett R Whitty; Brieanne Vaillancourt; Haining Lin; Alicia N Massa; Michael Geoffroy; Steven Lundback; Dean DellaPenna; C Robin Buell; Sanjeev Kumar Sharma; David F Marshall; Robbie Waugh; Glenn J Bryan; Marialaura Destefanis; Istvan Nagy; Dan Milbourne; Susan J Thomson; Mark Fiers; Jeanne M E Jacobs; Kåre L Nielsen; Mads Sønderkær; Marina Iovene; Giovana A Torres; Jiming Jiang; Richard E Veilleux; Christian W B Bachem; Jan de Boer; Theo Borm; Bjorn Kloosterman; Herman van Eck; Erwin Datema; Bas te Lintel Hekkert; Aska Goverse; Roeland C H J van Ham; Richard G F Visser
Journal:  Nature       Date:  2011-07-10       Impact factor: 49.962

10.  Significant comparative characteristics between orphan and nonorphan genes in the rice (Oryza sativa L.) genome.

Authors:  Wen-Jiu Guo; Ping Li; Jun Ling; Shao-Ping Ye
Journal:  Comp Funct Genomics       Date:  2007
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  52 in total

1.  Molecular Mechanisms Preventing Senescence in Response to Prolonged Darkness in a Desiccation-Tolerant Plant.

Authors:  Meriem Durgud; Saurabh Gupta; Ivan Ivanov; M Amin Omidbakhshfard; Maria Benina; Saleh Alseekh; Nikola Staykov; Mareike Hauenstein; Paul P Dijkwel; Stefan Hörtensteiner; Valentina Toneva; Yariv Brotman; Alisdair R Fernie; Bernd Mueller-Roeber; Tsanko S Gechev
Journal:  Plant Physiol       Date:  2018-05-22       Impact factor: 8.340

2.  Dehydration-Induced DnaK2 Chaperone Is Involved in PSII Repair of a Desiccation-Tolerant Cyanobacterium.

Authors:  Hai-Feng Xu; Guo-Zheng Dai; De-Min Ye; Jin-Long Shang; Wei-Yu Song; Huazhong Shi; Bao-Sheng Qiu
Journal:  Plant Physiol       Date:  2020-02-05       Impact factor: 8.340

Review 3.  Orthodox Seeds and Resurrection Plants: Two of a Kind?

Authors:  Maria-Cecília D Costa; Keren Cooper; Henk W M Hilhorst; Jill M Farrant
Journal:  Plant Physiol       Date:  2017-08-29       Impact factor: 8.340

4.  Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics.

Authors:  Abou Yobi; Karen A Schlauch; Richard L Tillett; Won C Yim; Catherine Espinoza; Bernard W M Wone; John C Cushman; Melvin J Oliver
Journal:  BMC Plant Biol       Date:  2017-03-28       Impact factor: 4.215

5.  Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants.

Authors:  Robert VanBuren; Jeremy Pardo; Ching Man Wai; Sterling Evans; Dorothea Bartels
Journal:  Plant Physiol       Date:  2019-01-02       Impact factor: 8.340

6.  Flexibility-Rigidity Coordination of the Dense Exopolysaccharide Matrix in Terrestrial Cyanobacteria Acclimated to Periodic Desiccation.

Authors:  Wen Liu; Lijuan Cui; Haiyan Xu; Zhaoxia Zhu; Xiang Gao
Journal:  Appl Environ Microbiol       Date:  2017-10-31       Impact factor: 4.792

7.  Desiccation Tolerance Evolved through Gene Duplication and Network Rewiring in Lindernia.

Authors:  Robert VanBuren; Ching Man Wai; Jeremy Pardo; Valentino Giarola; Stefano Ambrosini; Xiaomin Song; Dorothea Bartels
Journal:  Plant Cell       Date:  2018-10-25       Impact factor: 11.277

Review 8.  Dynamics of cell wall structure and related genomic resources for drought tolerance in rice.

Authors:  Showkat Ahmad Ganie; Golam Jalal Ahammed
Journal:  Plant Cell Rep       Date:  2021-01-02       Impact factor: 4.570

9.  DNA methylation-mediated modulation of rapid desiccation tolerance acquisition and dehydration stress memory in the resurrection plant Boea hygrometrica.

Authors:  Run-Ze Sun; Jie Liu; Yuan-Yuan Wang; Xin Deng
Journal:  PLoS Genet       Date:  2021-04-30       Impact factor: 5.917

10.  TCM-Blast for traditional Chinese medicine genome alignment with integrated resources.

Authors:  Zhao Chen; Jing Li; Ning Hou; Yanling Zhang; Yanjiang Qiao
Journal:  BMC Plant Biol       Date:  2021-07-17       Impact factor: 4.215

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