Literature DB >> 30602492

Massive Tandem Proliferation of ELIPs Supports Convergent Evolution of Desiccation Tolerance across Land Plants.

Robert VanBuren1,2, Jeremy Pardo2,3, Ching Man Wai4,2, Sterling Evans4, Dorothea Bartels5.   

Abstract

Desiccation tolerance was a critical adaptation for the colonization of land by early nonvascular plants. Resurrection plants have maintained or rewired these ancestral protective mechanisms, and desiccation-tolerant species are dispersed across the land plant phylogeny. Although common physiological, biochemical, and molecular signatures are observed across resurrection plant lineages, features underlying the recurrent evolution of desiccation tolerance are unknown. Here we used a comparative approach to identify patterns of genome evolution and gene duplication associated with desiccation tolerance. We identified a single gene family with dramatic expansion in all sequenced resurrection plant genomes and no expansion in desiccation-sensitive species. This gene family of early light-induced proteins (ELIPs) expanded in resurrection plants convergent through repeated tandem gene duplication. ELIPs are universally highly expressed during desiccation in all surveyed resurrection plants and may play a role in protecting against photooxidative damage of the photosynthetic apparatus during prolonged dehydration. Photosynthesis is particularly sensitive to dehydration, and the increased abundance of ELIPs may help facilitate the rapid recovery observed for most resurrection plants. Together, these observations support convergent evolution of desiccation tolerance in land plants through tandem gene duplication.
© 2019 American Society of Plant Biologists. All Rights Reserved.

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Year:  2019        PMID: 30602492      PMCID: PMC6393792          DOI: 10.1104/pp.18.01420

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  45 in total

Review 1.  Surviving metabolic arrest: photosynthesis during desiccation and rehydration in resurrection plants.

Authors:  Dinakar Challabathula; Jos T Puthur; Dorothea Bartels
Journal:  Ann N Y Acad Sci       Date:  2015-09-16       Impact factor: 5.691

2.  Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum.

Authors:  Robert VanBuren; Ching Man Wai; Qingwei Zhang; Xiaomin Song; Patrick P Edger; Doug Bryant; Todd P Michael; Todd C Mockler; Dorothea Bartels
Journal:  Plant Cell Environ       Date:  2017-10       Impact factor: 7.228

3.  Near-optimal probabilistic RNA-seq quantification.

Authors:  Nicolas L Bray; Harold Pimentel; Páll Melsted; Lior Pachter
Journal:  Nat Biotechnol       Date:  2016-04-04       Impact factor: 54.908

4.  An Evolutionarily Conserved Abscisic Acid Signaling Pathway Regulates Dormancy in the Liverwort Marchantia polymorpha.

Authors:  D Magnus Eklund; Masakazu Kanei; Eduardo Flores-Sandoval; Kimitsune Ishizaki; Ryuichi Nishihama; Takayuki Kohchi; Ulf Lagercrantz; Rishikesh P Bhalerao; Yoichi Sakata; John L Bowman
Journal:  Curr Biol       Date:  2018-11-08       Impact factor: 10.834

5.  Cbr, an algal homolog of plant early light-induced proteins, is a putative zeaxanthin binding protein.

Authors:  H Levy; T Tal; A Shaish; A Zamir
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

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Authors:  Andrew H Paterson; John E Bowers; Rémy Bruggmann; Inna Dubchak; Jane Grimwood; Heidrun Gundlach; Georg Haberer; Uffe Hellsten; Therese Mitros; Alexander Poliakov; Jeremy Schmutz; Manuel Spannagl; Haibao Tang; Xiyin Wang; Thomas Wicker; Arvind K Bharti; Jarrod Chapman; F Alex Feltus; Udo Gowik; Igor V Grigoriev; Eric Lyons; Christopher A Maher; Mihaela Martis; Apurva Narechania; Robert P Otillar; Bryan W Penning; Asaf A Salamov; Yu Wang; Lifang Zhang; Nicholas C Carpita; Michael Freeling; Alan R Gingle; C Thomas Hash; Beat Keller; Patricia Klein; Stephen Kresovich; Maureen C McCann; Ray Ming; Daniel G Peterson; Doreen Ware; Peter Westhoff; Klaus F X Mayer; Joachim Messing; Daniel S Rokhsar
Journal:  Nature       Date:  2009-01-29       Impact factor: 49.962

7.  Genome Analysis of the Ancient Tracheophyte Selaginella tamariscina Reveals Evolutionary Features Relevant to the Acquisition of Desiccation Tolerance.

Authors:  Zhichao Xu; Tianyi Xin; Dorothea Bartels; Ying Li; Wei Gu; Hui Yao; Sai Liu; Haoying Yu; Xiangdong Pu; Jianguo Zhou; Jiang Xu; Caicai Xi; Hetian Lei; Jingyuan Song; Shilin Chen
Journal:  Mol Plant       Date:  2018-05-17       Impact factor: 13.164

8.  Rice domestication by reducing shattering.

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Journal:  Science       Date:  2006-03-09       Impact factor: 47.728

9.  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Authors:  Yupeng Wang; Haibao Tang; Jeremy D Debarry; Xu Tan; Jingping Li; Xiyin Wang; Tae-ho Lee; Huizhe Jin; Barry Marler; Hui Guo; Jessica C Kissinger; Andrew H Paterson
Journal:  Nucleic Acids Res       Date:  2012-01-04       Impact factor: 16.971

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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  15 in total

1.  Coevolution of tandemly repeated hlips and RpaB-like transcriptional factor confers desiccation tolerance to subaerial Nostoc species.

Authors:  Hai-Feng Xu; Guo-Zheng Dai; Yang Bai; Jin-Long Shang; Bin Zheng; De-Min Ye; Huazhong Shi; Aaron Kaplan; Bao-Sheng Qiu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-10       Impact factor: 12.779

Review 2.  Exploring the High Variability of Vegetative Desiccation Tolerance in Pteridophytes.

Authors:  Gerardo Alejo-Jacuinde; Luis Herrera-Estrella
Journal:  Plants (Basel)       Date:  2022-04-30

3.  Intertwined signatures of desiccation and drought tolerance in grasses.

Authors:  Jeremy Pardo; Ching Man Wai; Hannah Chay; Christine F Madden; Henk W M Hilhorst; Jill M Farrant; Robert VanBuren
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-23       Impact factor: 11.205

4.  Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album.

Authors:  Ching Man Wai; Sean E Weise; Philip Ozersky; Todd C Mockler; Todd P Michael; Robert VanBuren
Journal:  PLoS Genet       Date:  2019-06-14       Impact factor: 5.917

Review 5.  Systems biology of resurrection plants.

Authors:  Tsanko Gechev; Rafe Lyall; Veselin Petrov; Dorothea Bartels
Journal:  Cell Mol Life Sci       Date:  2021-08-14       Impact factor: 9.261

6.  Functional Aspects of Early Light-Induced Protein (ELIP) Genes from the Desiccation-Tolerant Moss Syntrichia caninervis.

Authors:  Xiujin Liu; Yigong Zhang; Honglan Yang; Yuqing Liang; Xiaoshuang Li; Melvin J Oliver; Daoyuan Zhang
Journal:  Int J Mol Sci       Date:  2020-02-19       Impact factor: 5.923

7.  Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species.

Authors:  Gerardo Alejo-Jacuinde; Sandra Isabel González-Morales; Araceli Oropeza-Aburto; June Simpson; Luis Herrera-Estrella
Journal:  BMC Plant Biol       Date:  2020-10-12       Impact factor: 4.215

Review 8.  Genomic Convergence in the Adaptation to Extreme Environments.

Authors:  Shaohua Xu; Jiayan Wang; Zixiao Guo; Ziwen He; Suhua Shi
Journal:  Plant Commun       Date:  2020-10-29

Review 9.  Evolutionary innovations driving abiotic stress tolerance in C4 grasses and cereals.

Authors:  Jeremy Pardo; Robert VanBuren
Journal:  Plant Cell       Date:  2021-11-04       Impact factor: 11.277

Review 10.  Convergent evolution of gene regulatory networks underlying plant adaptations to dry environments.

Authors:  Mariana A S Artur; Kaisa Kajala
Journal:  Plant Cell Environ       Date:  2021-07-12       Impact factor: 7.228

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