Literature DB >> 25887612

I can see CRISPR now, even when phage are gone: a view on alternative CRISPR-Cas functions from the prokaryotic envelope.

Hannah K Ratner1, Timothy R Sampson, David S Weiss.   

Abstract

PURPOSE OF REVIEW: CRISPR-Cas systems are prokaryotic immune systems against invading nucleic acids that adapt as new environmental threats arise. There are emerging examples of CRISPR-Cas functions in bacterial physiology beyond their role in adaptive immunity. This highlights the poorly understood, but potentially common, moonlighting functions of these abundant systems. We propose that these noncanonical CRISPR-Cas activities have evolved to respond to stresses at the cell envelope. RECENT
FINDINGS: Here, we discuss recent literature describing the impact of the extracellular environment on the regulation of CRISPR-Cas systems, and the influence of CRISPR-Cas activity on bacterial physiology. These described noncanonical CRISPR-Cas functions allow the bacterial cell to respond to the extracellular environment, primarily through changes in envelope physiology.
SUMMARY: This review discusses the expanding noncanonical functions of CRISPR-Cas systems, including their roles in virulence, focusing mainly on their relationship to the cell envelope. We first examine the effects of the extracellular environment on regulation of CRISPR-Cas components, and then discuss the impact of CRISPR-Cas systems on bacterial physiology, concentrating on their roles in influencing interactions with the environment including host organisms.

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Year:  2015        PMID: 25887612      PMCID: PMC4414917          DOI: 10.1097/QCO.0000000000000154

Source DB:  PubMed          Journal:  Curr Opin Infect Dis        ISSN: 0951-7375            Impact factor:   4.915


  57 in total

1.  Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.

Authors:  Ki Hyun Nam; Fran Ding; Charles Haitjema; Qingqiu Huang; Matthew P DeLisa; Ailong Ke
Journal:  J Biol Chem       Date:  2012-08-31       Impact factor: 5.157

2.  Structural basis for the function of stringent starvation protein a as a transcription factor.

Authors:  Anne-Marie Hansen; Yijun Gu; Mi Li; Michelle Andrykovitch; David S Waugh; Ding Jun Jin; Xinhua Ji
Journal:  J Biol Chem       Date:  2005-02-25       Impact factor: 5.157

3.  Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis.

Authors:  Yan Zhang; Nadja Heidrich; Biju Joseph Ampattu; Carl W Gunderson; H Steven Seifert; Christoph Schoen; Jörg Vogel; Erik J Sontheimer
Journal:  Mol Cell       Date:  2013-05-23       Impact factor: 17.970

4.  A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barré syndrome.

Authors:  R Louwen; D Horst-Kreft; A G de Boer; L van der Graaf; G de Knegt; M Hamersma; A P Heikema; A R Timms; B C Jacobs; J A Wagenaar; H P Endtz; J van der Oost; J M Wells; E E S Nieuwenhuis; A H M van Vliet; P T J Willemsen; P van Baarlen; A van Belkum
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2012-09-04       Impact factor: 3.267

5.  Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli.

Authors:  Ido Yosef; Moran G Goren; Udi Qimron
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

Review 6.  Stress relief during host infection: The phage shock protein response supports bacterial virulence in various ways.

Authors:  Andrew J Darwin
Journal:  PLoS Pathog       Date:  2013-07-11       Impact factor: 6.823

Review 7.  Comparative genomics of defense systems in archaea and bacteria.

Authors:  Kira S Makarova; Yuri I Wolf; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2013-03-06       Impact factor: 16.971

8.  The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae.

Authors:  Felizza F Gunderson; Nicholas P Cianciotto
Journal:  MBio       Date:  2013-03-12       Impact factor: 7.867

9.  A CRISPR/Cas system mediates bacterial innate immune evasion and virulence.

Authors:  Timothy R Sampson; Sunil D Saroj; Anna C Llewellyn; Yih-Ling Tzeng; David S Weiss
Journal:  Nature       Date:  2013-04-14       Impact factor: 49.962

10.  The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems.

Authors:  Krzysztof Chylinski; Anaïs Le Rhun; Emmanuelle Charpentier
Journal:  RNA Biol       Date:  2013-04-05       Impact factor: 4.652

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  18 in total

1.  Overview of CRISPR-Cas9 Biology.

Authors:  Hannah K Ratner; Timothy R Sampson; David S Weiss
Journal:  Cold Spring Harb Protoc       Date:  2016-12-01

2.  Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence.

Authors:  Hannah K Ratner; Andrés Escalera-Maurer; Anaïs Le Rhun; Siddharth Jaggavarapu; Jessie E Wozniak; Emily K Crispell; Emmanuelle Charpentier; David S Weiss
Journal:  Mol Cell       Date:  2019-06-27       Impact factor: 17.970

Review 3.  CRISPR-Cas systems: role in cellular processes beyond adaptive immunity.

Authors:  Veena Devi; Kusum Harjai; Sanjay Chhibber
Journal:  Folia Microbiol (Praha)       Date:  2022-07-19       Impact factor: 2.629

4.  Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria.

Authors:  Sutharsan Govindarajan; Adair Borges; Shweta Karambelkar; Joseph Bondy-Denomy
Journal:  J Bacteriol       Date:  2022-04-07       Impact factor: 3.476

5.  Francisella novicida CRISPR-Cas Systems Can Functionally Complement Each Other in DNA Defense while Providing Target Flexibility.

Authors:  Hannah K Ratner; David S Weiss
Journal:  J Bacteriol       Date:  2020-05-27       Impact factor: 3.490

Review 6.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

7.  Functional Analysis of Bacteriophage Immunity through a Type I-E CRISPR-Cas System in Vibrio cholerae and Its Application in Bacteriophage Genome Engineering.

Authors:  Allison M Box; Matthew J McGuffie; Brendan J O'Hara; Kimberley D Seed
Journal:  J Bacteriol       Date:  2015-11-23       Impact factor: 3.490

8.  crRNA complementarity shifts endogenous CRISPR-Cas systems between transcriptional repression and DNA defense.

Authors:  Hannah K Ratner; David S Weiss
Journal:  RNA Biol       Date:  2021-03-18       Impact factor: 4.652

Review 9.  The Bacteriophage Carrier State of Campylobacter jejuni Features Changes in Host Non-coding RNAs and the Acquisition of New Host-derived CRISPR Spacer Sequences.

Authors:  Steven P T Hooton; Kelly J Brathwaite; Ian F Connerton
Journal:  Front Microbiol       Date:  2016-03-23       Impact factor: 5.640

10.  CRISPRDetect: A flexible algorithm to define CRISPR arrays.

Authors:  Ambarish Biswas; Raymond H J Staals; Sergio E Morales; Peter C Fineran; Chris M Brown
Journal:  BMC Genomics       Date:  2016-05-17       Impact factor: 3.969

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