| Literature DB >> 25880732 |
Nadine Correia Santos1, Patrício Soares Costa1, Liliana Amorim1, Pedro Silva Moreira1, Pedro Cunha2, Jorge Cotter2, Nuno Sousa1.
Abstract
Here we focus on factor analysis from a best practices point of view, by investigating the factor structure of neuropsychological tests and using the results obtained to illustrate on choosing a reasonable solution. The sample (n=1051 individuals) was randomly divided into two groups: one for exploratory factor analysis (EFA) and principal component analysis (PCA), to investigate the number of factors underlying the neurocognitive variables; the second to test the "best fit" model via confirmatory factor analysis (CFA). For the exploratory step, three extraction (maximum likelihood, principal axis factoring and principal components) and two rotation (orthogonal and oblique) methods were used. The analysis methodology allowed exploring how different cognitive/psychological tests correlated/discriminated between dimensions, indicating that to capture latent structures in similar sample sizes and measures, with approximately normal data distribution, reflective models with oblimin rotation might prove the most adequate.Entities:
Mesh:
Year: 2015 PMID: 25880732 PMCID: PMC4399987 DOI: 10.1371/journal.pone.0124229
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Sample characterization
| Females | Males | Total | ||
|---|---|---|---|---|
| Gender | 560 (53.3%) | 491 (46.7%) | 1051 | |
| Age | [ | 141 (52.8%) | 126 (47.2%) | 267 (25.4%) |
| [ | 176 (53.7%) | 152 (46.3%) | 328 (31.2%) | |
| 70 or more years | 243 (53.3%) | 213 (46.7%) | 456 (43.4%) | |
| School years | 3 or less years | 259 (71%) | 106 (29%) | 365 (34.7%) |
| 4 years | 246 (47.4%) | 273 (52.6%) | 519 (49.4%) | |
| 5 or more years | 55 (32.9%) | 112 (67.1%) | 167 (15.9%) |
Fig 1Factor analysis strategy for neurocognitive measures.
Descriptive statistics for the cognitive variables in the EFA and PCA.
| Raw Metrics | Z scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neurocognitive variable (valid: n = 333) | Range | Min | Max | Mean | SD | Skewness | Kurtosis | Min | Max | Mean | SD |
| MMSE | 13 | 17 | 30 | 27.1 | 2.43 | -1.41 | 2.44 | -3.84 | 1.16 | 0.03 | 0.93 |
| Digits forward | 15 | 0 | 15 | 7.6 | 2.08 | 0.65 | 1.06 | -3.58 | 3.40 | -0.04 | 0.97 |
| Digits backward | 10 | 0 | 10 | 4.0 | 1.79 | 0.74 | 0.49 | -2.05 | 3.04 | -0.03 | 0.91 |
| Stroop words | 94 | 11 | 105 | 62.7 | 18.15 | -0.04 | -0.29 | -2.86 | 2.34 | 0.00 | 1.00 |
| Stroop colors | 64 | 18 | 82 | 47.9 | 12.37 | 0.26 | 0.19 | -2.40 | 2.75 | 0.01 | 0.99 |
| Stroop words/colors | 64 | 0 | 64 | 28.9 | 11.37 | 0.71 | 0.56 | -2.43 | 2.92 | -0.01 | 0.95 |
| SRT LTS | 58 | 0 | 58 | 23.5 | 11.82 | 0.48 | -0.03 | -1.96 | 2.88 | 0.00 | 0.99 |
| SRT CLTR | 47 | 0 | 47 | 12.6 | 10.16 | 0.80 | 0.13 | -1.23 | 3.31 | -0.01 | 0.98 |
| SRT delayed recall | 12 | 0 | 12 | 5.3 | 2.16 | 0.08 | 0.24 | -2.41 | 3.09 | 0.00 | 0.99 |
| SRT intrusions | 13 | 0 | 13 | 2.4 | 2.74 | 1.31 | 1.06 | -0.84 | 3.72 | -0.02 | 0.96 |
| COWAT FAS admissible | 49 | 0 | 49 | 17.1 | 9.69 | 0.78 | 0.47 | -1.76 | 3.32 | 0.01 | 1.00 |
| COWAT FAS non admissible | 8 | 0 | 8 | 1.2 | 1.63 | 1.94 | 4.23 | -0.69 | 3.69 | -0.05 | 0.89 |
Descriptive statistics for the cognitive variables in the CFA.
| Raw Metrics | Z scores | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neurocognitive variable (valid: n = 333) | Range | Min | Max | Mean | SD | Skewness | Kurtosis | Min | Max | Mean | SD |
| MMSE | 13 | 17 | 30 | 27.1 | 2.56 | -1.40 | 2.31 | -3.79 | 1.13 | 0.02 | 0.97 |
| Digits forward | 11 | 3 | 14 | 7.4 | 1.94 | 0.60 | 0.03 | -2.27 | 3.45 | 0.00 | 1.01 |
| Digits backward | 10 | 0 | 10 | 3.8 | 1.77 | 0.85 | 0.98 | -2.14 | 3.49 | 0.00 | 1.00 |
| Stroop words | 93 | 14 | 107 | 63.3 | 19.34 | -0.09 | -0.44 | -2.56 | 2.26 | 0.00 | 1.00 |
| Stroop colors | 69 | 16 | 85 | 48.4 | 12.90 | 0.01 | -0.22 | -2.49 | 2.84 | 0.01 | 1.00 |
| Stroop words/colors | 64 | 5 | 69 | 28.9 | 11.35 | 0.64 | 0.51 | -2.09 | 3.55 | 0.01 | 1.00 |
| SRT LTS | 59 | 0 | 59 | 25.3 | 12.50 | 0.24 | -0.50 | -2.00 | 2.71 | 0.02 | 1.00 |
| SRT CLTR | 57 | 0 | 57 | 14.2 | 11.68 | 0.84 | 0.41 | -1.20 | 3.69 | 0.01 | 1.00 |
| SRT delayed recall | 12 | 0 | 12 | 5.6 | 2.37 | 0.11 | -0.12 | -2.34 | 2.70 | 0.02 | 1.00 |
| SRT intrusions | 14 | 0 | 14 | 2.6 | 3.14 | 1.38 | 1.37 | -0.78 | 3.20 | -0.03 | 0.89 |
| COWAT FAS admissible | 47 | 0 | 47 | 16.3 | 9.31 | 0.61 | -0.02 | -1.72 | 3.23 | -0.01 | 0.98 |
| COWAT FAS non admissible | 8 | 0 | 8 | 1.2 | 1.63 | 1.73 | 2.71 | -0.66 | 3.40 | -0.06 | 0.83 |
Comparison of the extraction and rotation methods in EFA (ML and PAF) and PC.
| Factor/Components loadings | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Extraction method | Rotation method | MMSE | Digits Forward | Digits Backward | Stroop Words | Stroop Colors | Stroop Words/colors | SRT LTS | SRT CLTR | SRT Delayed recall | COWAT FAS Admissible | COWAT FAS Non-admissible | Eigenvalues (after rotation) | Total variance (%) | Cumulative variance (%) | Cronbach α |
|
| ||||||||||||||||
|
|
| 0.411 | 0.447 | 0.456 | 0.833 | 0.747 | 0.476 | -0.007 | -0.035 | 0.068 | 0.651 | na | 3.185 |
|
| 0.797 |
|
| 0.459 | 0.422 | 0.477 | 0.770 | 0.705 | 0.462 | 0.226 | 0.197 | 0.250 | 0.633 | na | 2.474 | 24.7 | — | ||
|
|
| 0.414 | 0.463 | 0.486 | 0.810 | 0.721 | 0.476 | -0.008 | -0.033 | 0.063 | 0.666 | na | 3.191 |
|
| 0.797 |
|
| 0.467 | 0.438 | 0.505 | 0.748 | 0.683 | 0.462 | 0.224 | 0.195 | 0.250 | 0.647 | na | 2.474 | 24.7 | — | ||
|
|
| na | 0.586 | 0.495 | 0.829 | 0.775 | 0.593 | 0.008 | -0.026 | 0.014 | 0.714 | 0.058 | 3.252 |
|
| 0.777 |
|
| na | 0.566 | 0.545 | 0.797 | 0.760 | 0.582 | 0.204 | 0.172 | 0.196 | 0.710 | -0.014 | 2.782 | 27.8 | — | ||
|
| ||||||||||||||||
|
|
| 0.253 | -0.025 | 0.158 | -0.113 | -0.044 | 0.023 | 0.915 | 0.900 | 0.723 | 0.037 | na | 3.033 |
|
| 0.885 |
|
| 0.361 | 0.103 | 0.282 | 0.127 | 0.169 | 0.157 | 0.883 | 0.860 | 0.719 | 0.220 | na | 2.374 | 23.7 | 48.5 | ||
|
|
| -0.271 | 0.024 | -0.153 | 0.112 | 0.033 | -0.021 | -0.906 | -0.886 | -0.742 | -0.031 | na | 3.041 |
|
| 0.885 |
|
| 0.379 | 0.108 | 0.286 | 0.120 | 0.172 | 0.155 | 0.874 | 0.847 | 0.735 | 0.219 | na | 2.375 | 23.8 | 48.5 | ||
|
|
| na | 0.082 | -0.176 | 0.036 | -0.031 | -0.020 | -0.926 | -0.920 | -0.855 | -0.089 | -0.002 | 3.037 |
|
| 0.885 |
|
| na | 0.044 | 0.287 | 0.125 | 0.181 | 0.135 | 0.899 | 0.898 | 0.837 | 0.223 | -0.037 | 2.518 | 25.2 | 53.0 | ||
|
| ||||||||||||||||
|
|
| na | na | na | na | na | na | na | na | na | na | na | na | na | na | na |
|
| na | na | na | na | na | na | na | na | na | na | na | na | na | na | ||
|
|
| na | na | na | na | na | na | na | na | na | na | na | na | na | na | na |
|
| na | na | na | na | na | na | na | na | na | na | na | na | na | na | ||
|
|
| na | -0.143 | -0.318 | 0.085 | 0.061 | 0.033 | 0.000 | -0.001 | 0.004 | 0.102 | 0.957 | 1.155 |
|
| na |
|
| na | -0.175 | -0.356 | 0.034 | 0.010 | -0.006 | -0.045 | -0.044 | -0.038 | 0.053 | 0.950 | 1.069 | 10.7 | 63.7 | ||
* = Cannot compute total variance after oblique rotation due to correlation of factors.
na = Not applicable (where applicable: for ML and PAF, only 2 factors were extracted and COWAT FAS non-admissible excluded due to very small initial communality values; for PC, MMSE excluded due to similar and absolute loading < .4 in two separate components and Cronbachα not computed for Factor 3 because only one variable).
a Factor 2 was the first extracted factor.
b Total variance accounted for after rotation.
c Cumulative variance explained after rotation.
Fig 2Confirmatory Factor Analysis.
Construct reliability and validity for the MEM and GENEXEC dimensions.
| Estimate | Sum | Sum (Squared) | Estimate (Squared) | 1—Estimate (Squared) | Sum | Reliability | Validity | ||
|---|---|---|---|---|---|---|---|---|---|
| zSRT LTS | MEM | 0.921 | 0.848 | 0.152 | |||||
| zSRT CLTR | MEM | 0.915 | 0.837 | 0.163 | |||||
| zSRT delayed recall | MEM | 0.762 | 2.598 | 6.750 | 0.581 | 0.419 | 0.734 | 0.902 | 0.755 |
| zMMSE | GENEXEC | 0.572 | 0.327 | 0.673 | |||||
| zDigits forward | GENEXEC | 0.484 | 0.234 | 0.766 | |||||
| zDigits backward | GENEXEC | 0.612 | 0.375 | 0.625 | |||||
| zStroop words | GENEXEC | 0.755 | 0.570 | 0.430 | |||||
| zStroop colors | GENEXEC | 0.648 | 0.420 | 0.580 | |||||
| zStroop words colors | GENEXEC | 0.467 | 0.218 | 0.782 | |||||
| zCOWAT FAS admissable | GENEXEC | 0.658 | 4.196 | 17.606 | 0.433 | 0.567 | 4.423 | 0.799 | 0.368 |
Linear multiple regression models for MEM and GENEXEC latent scores.
| MEM | GENEXEC | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| B | S.E. | t | Beta | B 95% C.I. | B | S.E. | t | Beta | B 95% C.I. | |||
| L | U | L | U | |||||||||
| Gender (male) | 0.044 | 0.097 | 0.457 | 0.024 | -0.146 | 0.234 | 0.141 | 0.044 | 3.244 | 0.154 | 0.056 | 0.227 |
| Age | -0.030 | 0.005 | -5.476 | -0.283 | -0.040 | -0.019 | -0.013 | 0.002 | -5.467 | -0.260 | -0.018 | -0.009 |
| School years | 0.087 | 0.018 | 4.794 | 0.254 | 0.051 | 0.122 | 0.064 | 0.008 | 7.857 | 0.383 | 0.048 | 0.08 |
*p<.05;
**p<.01;
***p<.001.
Descriptive statistics, correlations (below the diagonal), and variance/covariance (diagonal and above) matrices for the variables in the model.
| Variable (z score) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MMSE | 0.943 | 0.253 | 0.358 | 0.417 | 0.343 | 0.230 | 0.321 | 0.348 | 0.320 | -0.073 | 0.340 | -0.148 |
| Digits forward | .259 | 1.013 | 0.379 | 0.345 | 0.271 | 0.212 | 0.195 | 0.218 | 0.198 | 0.051 | 0.348 | -0.001 |
| Digits backward | .369 | .377 | 0.997 | 0.438 | 0.367 | 0.300 | 0.322 | 0.351 | 0.355 | -0.061 | 0.358 | -0.085 |
| Stroop words | .429 | .343 | .438 | 1.001 | 0.651 | 0.401 | 0.343 | 0.362 | 0.373 | -0.156 | 0.524 | -0.094 |
| Stroop colors | .354 | .270 | .368 | .652 | 0.995 | 0.565 | 0.376 | 0.363 | 0.364 | -0.043 | 0.412 | -0.096 |
| Stroop words/colors | .237 | .211 | .300 | .400 | .567 | 1.000 | 0.284 | 0.235 | 0.247 | -0.069 | 0.237 | -0.120 |
| SRT LTS | .331 | .194 | .324 | .344 | .378 | .284 | 0.996 | 0.845 | 0.698 | 0.009 | 0.316 | -0.085 |
| SRT CLTR | .358 | .216 | .351 | .361 | .364 | .235 | .845 | 1.003 | 0.684 | -0.048 | 0.358 | -0.108 |
| SRT delayed recall | .331 | .197 | .357 | .374 | .367 | .248 | .702 | .686 | 0.991 | 0.010 | 0.336 | -0.114 |
| SRT intrusions | -.084 | .057 | -.068 | -.175 | -.049 | -.077 | .010 | -.054 | .012 | 0.796 | -0.090 | 0.052 |
| COWAT FAS admissible | .357 | .352 | .366 | .534 | .421 | .242 | .322 | .364 | .344 | -.103 | 0.962 | -0.059 |
| COWAT FAS non admissible | -.185 | -.002 | -.103 | -.114 | -.116 | -.145 | -.103 | -.130 | -.139 | .071 | -.073 | 0.684 |
n = 333 |
*p<.05;
**p<.01.
Correlation matrix of the neurocognitive variables in the EFA/PC and CFA.
| EFA/CP (CFA) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Variable, z score | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
| MMSE | ||||||||||||
| Digits forward | .240 | |||||||||||
| (.259 | ||||||||||||
| Digits backward | .394 | .375 | ||||||||||
| (.369 | (.377 | |||||||||||
| Stroop words | .375 | .313 | .344 | |||||||||
| (.429 | (.343 | (.438 | ||||||||||
| Stroop colors | .320 | .242 | .326 | .624 | ||||||||
| (.354 | (.270 | (.368 | (.652 | |||||||||
| Stroop words/colors | .279 | .196 | .258 | .306 | .496 | |||||||
| (.237 | (.211 | (.300 | (.400 | (.567 | ||||||||
| SRT LTS | .415 | .173 | .345 | .294 | .309 | .250 | ||||||
| (.331 | (.194 | (.324 | (.344 | (.378 | (.284 | |||||||
| SRT CLTR | .368 | .173 | .333 | .275 | .284 | .216 | .808 | |||||
| (.358 | (.216 | (.351 | (.361 | (.364 | (.235 | (.845 | ||||||
| SRT delayed recall | .456 | .185 | .339 | .243 | .332 | .226 | .685 | .665 | ||||
| (.331 | (.197 | (.357 | (.374 | (.367 | (.248 | (.702 | (.686 | |||||
| SRT intrusions | .035 | .017 | -.033 | .012 | .037 | -.016 | -.017 | -.060 | -.003 | |||
| (-.084) | (.057) | (-.068) | (-.175 | (-.049) | (-.077) | (.010) | (-.054) | (.012) | ||||
| COWAT FAS admissible | .435 | .354 | .444 | .540 | .397 | .265 | .340 | .312 | .291 | .105 | ||
| (.357 | (.352 | (.366 | (.534 | (.421 | (.242 | (.322 | (.364 | (.344 | (-.103) | |||
| COWAT FAS non admissible | -.091 | -.048 | -.173 | -.060 | -.088 | -.062 | -.091 | -.084 | -.071 | .033 | .004 | |
| (-.185 | (-.002) | (-.103) | (-.114 | (-.116 | (-.145 | (-.103) | (-.130 | (-.139 | (.071) | (-.073) | ||
*p<.05;
**p<.01