| Literature DB >> 25878871 |
Muhammad Nawaz Tahir1, Hazoor Ahmad Shad2, Abdul Rauf3, Abdul Haleem Khan4.
Abstract
In the title Schiff base, C13H9Cl2NO2, which arose from the condensation of 3,4-di-chloro-aniline with 2,3-di-hydroxy-benzaldehyde, the dihedral angle between the aromatic rings is 44.74 (13)°. Intra-molecular O-H⋯O and O-H⋯N hydrogen bonds close S(5) and S(6) rings, respectively. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R 2 (2)(10) loops. A weak C-H⋯π inter-action is also observed.Entities:
Keywords: Schiff base; benzene-1,2-diol; crystal structure; hydrogen bonding
Year: 2015 PMID: 25878871 PMCID: PMC4384559 DOI: 10.1107/S2056989015001401
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C13H9Cl2NO2 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 1866 reflections | |
| θ = 1.8–27.0° | |
| α = 88.606 (6)° | µ = 0.52 mm−1 |
| β = 76.588 (6)° | |
| γ = 70.193 (5)° | Prism, red |
| 0.34 × 0.26 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2671 independent reflections |
| Radiation source: fine-focus sealed tube | 1866 reflections with |
| Graphite monochromator | |
| Detector resolution: 7.80 pixels mm-1 | θmax = 27.0°, θmin = 1.8° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8896 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2671 reflections | (Δ/σ)max < 0.001 |
| 165 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.24642 (15) | 0.26936 (10) | 0.01956 (8) | 0.0657 (3) | |
| Cl2 | 0.73742 (15) | 0.11968 (10) | 0.06575 (9) | 0.0707 (3) | |
| O1 | −0.2559 (3) | 0.9592 (2) | 0.38833 (19) | 0.0508 (5) | |
| H1 | −0.1671 | 0.8794 | 0.3473 | 0.076* | |
| O2 | −0.4973 (3) | 1.2453 (3) | 0.5138 (2) | 0.0594 (6) | |
| H2 | −0.5353 | 1.1679 | 0.5037 | 0.089* | |
| N1 | 0.1345 (4) | 0.7735 (3) | 0.2617 (2) | 0.0452 (6) | |
| C1 | −0.1526 (5) | 1.0707 (3) | 0.3887 (2) | 0.0388 (6) | |
| C2 | −0.2793 (5) | 1.2167 (3) | 0.4525 (2) | 0.0440 (6) | |
| C3 | −0.1834 (5) | 1.3338 (3) | 0.4543 (2) | 0.0478 (7) | |
| H3 | −0.2694 | 1.4313 | 0.4964 | 0.057* | |
| C4 | 0.0401 (5) | 1.3083 (4) | 0.3943 (3) | 0.0516 (7) | |
| H4 | 0.1030 | 1.3886 | 0.3954 | 0.062* | |
| C5 | 0.1694 (5) | 1.1613 (4) | 0.3322 (3) | 0.0494 (7) | |
| H5 | 0.3201 | 1.1427 | 0.2932 | 0.059* | |
| C6 | 0.0738 (5) | 1.0419 (3) | 0.3285 (2) | 0.0409 (6) | |
| C7 | 0.2124 (5) | 0.8875 (3) | 0.2674 (2) | 0.0440 (6) | |
| H7 | 0.3638 | 0.8708 | 0.2309 | 0.053* | |
| C8 | 0.2859 (5) | 0.6190 (3) | 0.2123 (2) | 0.0433 (6) | |
| C9 | 0.2070 (5) | 0.5315 (3) | 0.1462 (2) | 0.0464 (7) | |
| H9 | 0.0614 | 0.5751 | 0.1334 | 0.056* | |
| C10 | 0.3479 (5) | 0.3784 (3) | 0.0998 (2) | 0.0447 (6) | |
| C11 | 0.5634 (5) | 0.3123 (3) | 0.1205 (2) | 0.0471 (7) | |
| C12 | 0.6396 (5) | 0.3969 (4) | 0.1879 (3) | 0.0490 (7) | |
| H12 | 0.7834 | 0.3514 | 0.2027 | 0.059* | |
| C13 | 0.5000 (5) | 0.5513 (3) | 0.2339 (2) | 0.0480 (7) | |
| H13 | 0.5511 | 0.6091 | 0.2793 | 0.058* |
| Cl1 | 0.0749 (6) | 0.0607 (5) | 0.0663 (5) | −0.0278 (4) | −0.0167 (4) | −0.0188 (4) |
| Cl2 | 0.0675 (6) | 0.0459 (5) | 0.0815 (6) | −0.0049 (4) | −0.0040 (4) | −0.0243 (4) |
| O1 | 0.0505 (11) | 0.0377 (10) | 0.0591 (13) | −0.0162 (9) | 0.0005 (9) | −0.0157 (9) |
| O2 | 0.0502 (12) | 0.0463 (12) | 0.0765 (15) | −0.0184 (10) | 0.0001 (11) | −0.0216 (11) |
| N1 | 0.0488 (13) | 0.0387 (12) | 0.0405 (12) | −0.0089 (10) | −0.0041 (10) | −0.0057 (10) |
| C1 | 0.0451 (14) | 0.0348 (13) | 0.0361 (13) | −0.0133 (11) | −0.0086 (11) | −0.0023 (10) |
| C2 | 0.0503 (16) | 0.0365 (14) | 0.0419 (14) | −0.0111 (12) | −0.0094 (12) | −0.0072 (11) |
| C3 | 0.0619 (18) | 0.0362 (14) | 0.0423 (15) | −0.0117 (13) | −0.0133 (13) | −0.0077 (12) |
| C4 | 0.067 (2) | 0.0455 (16) | 0.0519 (17) | −0.0291 (15) | −0.0173 (15) | 0.0016 (13) |
| C5 | 0.0536 (17) | 0.0495 (16) | 0.0469 (16) | −0.0240 (14) | −0.0058 (13) | −0.0009 (13) |
| C6 | 0.0489 (15) | 0.0346 (13) | 0.0355 (13) | −0.0114 (12) | −0.0070 (11) | −0.0001 (11) |
| C7 | 0.0473 (15) | 0.0405 (14) | 0.0372 (14) | −0.0113 (12) | −0.0016 (11) | −0.0053 (11) |
| C8 | 0.0508 (16) | 0.0365 (14) | 0.0359 (14) | −0.0124 (12) | −0.0007 (12) | −0.0059 (11) |
| C9 | 0.0490 (16) | 0.0435 (15) | 0.0442 (15) | −0.0146 (13) | −0.0073 (12) | −0.0045 (12) |
| C10 | 0.0531 (16) | 0.0436 (15) | 0.0373 (14) | −0.0198 (13) | −0.0051 (12) | −0.0047 (11) |
| C11 | 0.0524 (16) | 0.0396 (14) | 0.0406 (15) | −0.0113 (13) | 0.0001 (12) | −0.0070 (12) |
| C12 | 0.0469 (16) | 0.0486 (16) | 0.0463 (16) | −0.0102 (13) | −0.0094 (13) | −0.0060 (13) |
| C13 | 0.0546 (17) | 0.0455 (16) | 0.0422 (15) | −0.0160 (13) | −0.0089 (13) | −0.0103 (12) |
| Cl1—C10 | 1.733 (3) | C4—H4 | 0.9300 |
| Cl2—C11 | 1.731 (3) | C5—C6 | 1.396 (4) |
| O1—C1 | 1.363 (3) | C5—H5 | 0.9300 |
| O1—H1 | 0.8200 | C6—C7 | 1.450 (4) |
| O2—C2 | 1.359 (3) | C7—H7 | 0.9300 |
| O2—H2 | 0.8200 | C8—C13 | 1.383 (4) |
| N1—C7 | 1.277 (4) | C8—C9 | 1.392 (4) |
| N1—C8 | 1.423 (3) | C9—C10 | 1.388 (4) |
| C1—C2 | 1.394 (4) | C9—H9 | 0.9300 |
| C1—C6 | 1.401 (4) | C10—C11 | 1.385 (4) |
| C2—C3 | 1.375 (4) | C11—C12 | 1.373 (4) |
| C3—C4 | 1.390 (4) | C12—C13 | 1.394 (4) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.395 (4) | C13—H13 | 0.9300 |
| C1—O1—H1 | 109.5 | N1—C7—C6 | 122.5 (3) |
| C2—O2—H2 | 109.5 | N1—C7—H7 | 118.7 |
| C7—N1—C8 | 119.6 (2) | C6—C7—H7 | 118.7 |
| O1—C1—C2 | 117.8 (2) | C13—C8—C9 | 119.9 (2) |
| O1—C1—C6 | 122.1 (2) | C13—C8—N1 | 122.1 (3) |
| C2—C1—C6 | 120.1 (2) | C9—C8—N1 | 117.9 (3) |
| O2—C2—C3 | 119.1 (2) | C10—C9—C8 | 119.3 (3) |
| O2—C2—C1 | 120.9 (2) | C10—C9—H9 | 120.3 |
| C3—C2—C1 | 120.0 (3) | C8—C9—H9 | 120.3 |
| C2—C3—C4 | 120.9 (3) | C11—C10—C9 | 120.3 (3) |
| C2—C3—H3 | 119.6 | C11—C10—Cl1 | 120.7 (2) |
| C4—C3—H3 | 119.6 | C9—C10—Cl1 | 118.9 (2) |
| C3—C4—C5 | 119.5 (3) | C12—C11—C10 | 120.5 (3) |
| C3—C4—H4 | 120.3 | C12—C11—Cl2 | 118.9 (2) |
| C5—C4—H4 | 120.3 | C10—C11—Cl2 | 120.6 (2) |
| C4—C5—C6 | 120.3 (3) | C11—C12—C13 | 119.5 (3) |
| C4—C5—H5 | 119.8 | C11—C12—H12 | 120.2 |
| C6—C5—H5 | 119.8 | C13—C12—H12 | 120.2 |
| C5—C6—C1 | 119.3 (2) | C8—C13—C12 | 120.4 (3) |
| C5—C6—C7 | 119.8 (3) | C8—C13—H13 | 119.8 |
| C1—C6—C7 | 120.9 (2) | C12—C13—H13 | 119.8 |
| O1—C1—C2—O2 | 1.1 (4) | C1—C6—C7—N1 | 2.5 (4) |
| C6—C1—C2—O2 | −178.3 (3) | C7—N1—C8—C13 | 40.5 (4) |
| O1—C1—C2—C3 | −179.2 (3) | C7—N1—C8—C9 | −143.4 (3) |
| C6—C1—C2—C3 | 1.4 (4) | C13—C8—C9—C10 | −1.9 (4) |
| O2—C2—C3—C4 | 179.0 (3) | N1—C8—C9—C10 | −178.1 (2) |
| C1—C2—C3—C4 | −0.7 (4) | C8—C9—C10—C11 | 1.0 (4) |
| C2—C3—C4—C5 | −0.6 (4) | C8—C9—C10—Cl1 | 179.0 (2) |
| C3—C4—C5—C6 | 1.3 (5) | C9—C10—C11—C12 | 0.5 (4) |
| C4—C5—C6—C1 | −0.7 (4) | Cl1—C10—C11—C12 | −177.5 (2) |
| C4—C5—C6—C7 | −177.7 (3) | C9—C10—C11—Cl2 | 178.5 (2) |
| O1—C1—C6—C5 | 179.9 (3) | Cl1—C10—C11—Cl2 | 0.5 (4) |
| C2—C1—C6—C5 | −0.7 (4) | C10—C11—C12—C13 | −1.1 (4) |
| O1—C1—C6—C7 | −3.1 (4) | Cl2—C11—C12—C13 | −179.1 (2) |
| C2—C1—C6—C7 | 176.3 (3) | C9—C8—C13—C12 | 1.3 (4) |
| C8—N1—C7—C6 | −172.6 (2) | N1—C8—C13—C12 | 177.3 (3) |
| C5—C6—C7—N1 | 179.5 (3) | C11—C12—C13—C8 | 0.2 (4) |
| H··· | ||||
| O1—H1···N1 | 0.82 | 1.89 | 2.608 (3) | 146 |
| O2—H2···O1 | 0.82 | 2.28 | 2.729 (3) | 115 |
| O2—H2···O1i | 0.82 | 2.20 | 2.846 (3) | 136 |
| C12—H12··· | 0.93 | 2.83 | 3.538 (4) | 134 |
Hydrogen-bond geometry (, )
Cg1 is the centroid of the benzene ring (C1C6).
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1N1 | 0.82 | 1.89 | 2.608(3) | 146 |
| O2H2O1 | 0.82 | 2.28 | 2.729(3) | 115 |
| O2H2O1i | 0.82 | 2.20 | 2.846(3) | 136 |
| C12H12 | 0.93 | 2.83 | 3.538(4) | 134 |
Symmetry codes: (i) ; (ii) .