Literature DB >> 25878871

Crystal structure of 3-{(E)-[(3,4-di-chloro-phen-yl)imino]-meth-yl}benzene-1,2-diol.

Muhammad Nawaz Tahir1, Hazoor Ahmad Shad2, Abdul Rauf3, Abdul Haleem Khan4.   

Abstract

In the title Schiff base, C13H9Cl2NO2, which arose from the condensation of 3,4-di-chloro-aniline with 2,3-di-hydroxy-benzaldehyde, the dihedral angle between the aromatic rings is 44.74 (13)°. Intra-molecular O-H⋯O and O-H⋯N hydrogen bonds close S(5) and S(6) rings, respectively. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R 2 (2)(10) loops. A weak C-H⋯π inter-action is also observed.

Entities:  

Keywords:  Schiff base; benzene-1,2-diol; crystal structure; hydrogen bonding

Year:  2015        PMID: 25878871      PMCID: PMC4384559          DOI: 10.1107/S2056989015001401

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures, see: Fun et al. (2011 ▸); Keleşoğlu et al. (2009 ▸); Shuja et al. (2006 ▸); Tahir et al. (2012 ▸); Temel et al. (2007 ▸).

Experimental

Crystal data

C13H9Cl2NO2 M = 282.11 Triclinic, a = 6.4237 (8) Å b = 8.8412 (11) Å c = 11.7799 (15) Å α = 88.606 (6)° β = 76.588 (6)° γ = 70.193 (5)° V = 611.20 (13) Å3 Z = 2 Mo Kα radiation μ = 0.52 mm−1 T = 296 K 0.34 × 0.26 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.844, T max = 0.902 8896 measured reflections 2671 independent reflections 1866 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.164 S = 1.04 2671 reflections 165 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.33 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015001401/hb7353sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015001401/hb7353Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015001401/hb7353Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015001401/hb7353fig1.tif View of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. PLATON . DOI: 10.1107/S2056989015001401/hb7353fig2.tif The partial packing (PLATON; Spek, 2009), which shows that mol­ecules form dimers due to O—H⋯O inter­actions. CCDC reference: 1044861 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H9Cl2NO2Z = 2
Mr = 282.11F(000) = 284
Triclinic, P1Dx = 1.533 Mg m3
a = 6.4237 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.8412 (11) ÅCell parameters from 1866 reflections
c = 11.7799 (15) Åθ = 1.8–27.0°
α = 88.606 (6)°µ = 0.52 mm1
β = 76.588 (6)°T = 296 K
γ = 70.193 (5)°Prism, red
V = 611.20 (13) Å30.34 × 0.26 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer2671 independent reflections
Radiation source: fine-focus sealed tube1866 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 7.80 pixels mm-1θmax = 27.0°, θmin = 1.8°
ω scansh = −8→7
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −11→9
Tmin = 0.844, Tmax = 0.902l = −14→15
8896 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0781P)2 + 0.3755P] where P = (Fo2 + 2Fc2)/3
2671 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.24642 (15)0.26936 (10)0.01956 (8)0.0657 (3)
Cl20.73742 (15)0.11968 (10)0.06575 (9)0.0707 (3)
O1−0.2559 (3)0.9592 (2)0.38833 (19)0.0508 (5)
H1−0.16710.87940.34730.076*
O2−0.4973 (3)1.2453 (3)0.5138 (2)0.0594 (6)
H2−0.53531.16790.50370.089*
N10.1345 (4)0.7735 (3)0.2617 (2)0.0452 (6)
C1−0.1526 (5)1.0707 (3)0.3887 (2)0.0388 (6)
C2−0.2793 (5)1.2167 (3)0.4525 (2)0.0440 (6)
C3−0.1834 (5)1.3338 (3)0.4543 (2)0.0478 (7)
H3−0.26941.43130.49640.057*
C40.0401 (5)1.3083 (4)0.3943 (3)0.0516 (7)
H40.10301.38860.39540.062*
C50.1694 (5)1.1613 (4)0.3322 (3)0.0494 (7)
H50.32011.14270.29320.059*
C60.0738 (5)1.0419 (3)0.3285 (2)0.0409 (6)
C70.2124 (5)0.8875 (3)0.2674 (2)0.0440 (6)
H70.36380.87080.23090.053*
C80.2859 (5)0.6190 (3)0.2123 (2)0.0433 (6)
C90.2070 (5)0.5315 (3)0.1462 (2)0.0464 (7)
H90.06140.57510.13340.056*
C100.3479 (5)0.3784 (3)0.0998 (2)0.0447 (6)
C110.5634 (5)0.3123 (3)0.1205 (2)0.0471 (7)
C120.6396 (5)0.3969 (4)0.1879 (3)0.0490 (7)
H120.78340.35140.20270.059*
C130.5000 (5)0.5513 (3)0.2339 (2)0.0480 (7)
H130.55110.60910.27930.058*
U11U22U33U12U13U23
Cl10.0749 (6)0.0607 (5)0.0663 (5)−0.0278 (4)−0.0167 (4)−0.0188 (4)
Cl20.0675 (6)0.0459 (5)0.0815 (6)−0.0049 (4)−0.0040 (4)−0.0243 (4)
O10.0505 (11)0.0377 (10)0.0591 (13)−0.0162 (9)0.0005 (9)−0.0157 (9)
O20.0502 (12)0.0463 (12)0.0765 (15)−0.0184 (10)0.0001 (11)−0.0216 (11)
N10.0488 (13)0.0387 (12)0.0405 (12)−0.0089 (10)−0.0041 (10)−0.0057 (10)
C10.0451 (14)0.0348 (13)0.0361 (13)−0.0133 (11)−0.0086 (11)−0.0023 (10)
C20.0503 (16)0.0365 (14)0.0419 (14)−0.0111 (12)−0.0094 (12)−0.0072 (11)
C30.0619 (18)0.0362 (14)0.0423 (15)−0.0117 (13)−0.0133 (13)−0.0077 (12)
C40.067 (2)0.0455 (16)0.0519 (17)−0.0291 (15)−0.0173 (15)0.0016 (13)
C50.0536 (17)0.0495 (16)0.0469 (16)−0.0240 (14)−0.0058 (13)−0.0009 (13)
C60.0489 (15)0.0346 (13)0.0355 (13)−0.0114 (12)−0.0070 (11)−0.0001 (11)
C70.0473 (15)0.0405 (14)0.0372 (14)−0.0113 (12)−0.0016 (11)−0.0053 (11)
C80.0508 (16)0.0365 (14)0.0359 (14)−0.0124 (12)−0.0007 (12)−0.0059 (11)
C90.0490 (16)0.0435 (15)0.0442 (15)−0.0146 (13)−0.0073 (12)−0.0045 (12)
C100.0531 (16)0.0436 (15)0.0373 (14)−0.0198 (13)−0.0051 (12)−0.0047 (11)
C110.0524 (16)0.0396 (14)0.0406 (15)−0.0113 (13)0.0001 (12)−0.0070 (12)
C120.0469 (16)0.0486 (16)0.0463 (16)−0.0102 (13)−0.0094 (13)−0.0060 (13)
C130.0546 (17)0.0455 (16)0.0422 (15)−0.0160 (13)−0.0089 (13)−0.0103 (12)
Cl1—C101.733 (3)C4—H40.9300
Cl2—C111.731 (3)C5—C61.396 (4)
O1—C11.363 (3)C5—H50.9300
O1—H10.8200C6—C71.450 (4)
O2—C21.359 (3)C7—H70.9300
O2—H20.8200C8—C131.383 (4)
N1—C71.277 (4)C8—C91.392 (4)
N1—C81.423 (3)C9—C101.388 (4)
C1—C21.394 (4)C9—H90.9300
C1—C61.401 (4)C10—C111.385 (4)
C2—C31.375 (4)C11—C121.373 (4)
C3—C41.390 (4)C12—C131.394 (4)
C3—H30.9300C12—H120.9300
C4—C51.395 (4)C13—H130.9300
C1—O1—H1109.5N1—C7—C6122.5 (3)
C2—O2—H2109.5N1—C7—H7118.7
C7—N1—C8119.6 (2)C6—C7—H7118.7
O1—C1—C2117.8 (2)C13—C8—C9119.9 (2)
O1—C1—C6122.1 (2)C13—C8—N1122.1 (3)
C2—C1—C6120.1 (2)C9—C8—N1117.9 (3)
O2—C2—C3119.1 (2)C10—C9—C8119.3 (3)
O2—C2—C1120.9 (2)C10—C9—H9120.3
C3—C2—C1120.0 (3)C8—C9—H9120.3
C2—C3—C4120.9 (3)C11—C10—C9120.3 (3)
C2—C3—H3119.6C11—C10—Cl1120.7 (2)
C4—C3—H3119.6C9—C10—Cl1118.9 (2)
C3—C4—C5119.5 (3)C12—C11—C10120.5 (3)
C3—C4—H4120.3C12—C11—Cl2118.9 (2)
C5—C4—H4120.3C10—C11—Cl2120.6 (2)
C4—C5—C6120.3 (3)C11—C12—C13119.5 (3)
C4—C5—H5119.8C11—C12—H12120.2
C6—C5—H5119.8C13—C12—H12120.2
C5—C6—C1119.3 (2)C8—C13—C12120.4 (3)
C5—C6—C7119.8 (3)C8—C13—H13119.8
C1—C6—C7120.9 (2)C12—C13—H13119.8
O1—C1—C2—O21.1 (4)C1—C6—C7—N12.5 (4)
C6—C1—C2—O2−178.3 (3)C7—N1—C8—C1340.5 (4)
O1—C1—C2—C3−179.2 (3)C7—N1—C8—C9−143.4 (3)
C6—C1—C2—C31.4 (4)C13—C8—C9—C10−1.9 (4)
O2—C2—C3—C4179.0 (3)N1—C8—C9—C10−178.1 (2)
C1—C2—C3—C4−0.7 (4)C8—C9—C10—C111.0 (4)
C2—C3—C4—C5−0.6 (4)C8—C9—C10—Cl1179.0 (2)
C3—C4—C5—C61.3 (5)C9—C10—C11—C120.5 (4)
C4—C5—C6—C1−0.7 (4)Cl1—C10—C11—C12−177.5 (2)
C4—C5—C6—C7−177.7 (3)C9—C10—C11—Cl2178.5 (2)
O1—C1—C6—C5179.9 (3)Cl1—C10—C11—Cl20.5 (4)
C2—C1—C6—C5−0.7 (4)C10—C11—C12—C13−1.1 (4)
O1—C1—C6—C7−3.1 (4)Cl2—C11—C12—C13−179.1 (2)
C2—C1—C6—C7176.3 (3)C9—C8—C13—C121.3 (4)
C8—N1—C7—C6−172.6 (2)N1—C8—C13—C12177.3 (3)
C5—C6—C7—N1179.5 (3)C11—C12—C13—C80.2 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.892.608 (3)146
O2—H2···O10.822.282.729 (3)115
O2—H2···O1i0.822.202.846 (3)136
C12—H12···Cg1ii0.932.833.538 (4)134
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the benzene ring (C1C6).

DHA DHHA D A DHA
O1H1N10.821.892.608(3)146
O2H2O10.822.282.729(3)115
O2H2O1i 0.822.202.846(3)136
C12H12Cg1ii 0.932.833.538(4)134

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-3-[(3-Bromo-phen-yl)imino-meth-yl]benzene-1,2-diol: a combined X-ray and computational structural study.

Authors:  Zeynep Keleşoğlu; Orhan Büyükgüngör; Ciğdem Albayrak; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

3.  2-[(E)-(2,4,6-Trichloro-phen-yl)imino-meth-yl]phenol.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; S Viveka; D J Madhukumar; G K Nagaraja
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

5.  4-{[(E)-2,3-Dihy-droxy-benzyl-idene]amino}-N-(5-methyl-1,2-oxazol-3-yl)benzene-sulfonamide.

Authors:  M Nawaz Tahir; Abdul Haleem Khan; Mohammad S Iqbal; Christy Munir; Tariq Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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