Literature DB >> 22090978

2-[(E)-(2,4,6-Trichloro-phen-yl)imino-meth-yl]phenol.

Hoong-Kun Fun, Ching Kheng Quah, S Viveka, D J Madhukumar, G K Nagaraja.   

Abstract

The title mol-ecule, C(13)H(8)Cl(3)NO, exists in a trans configuration with respect to the C=N bond [1.278 (2) Å]. The benzene rings form a dihedral angle of 24.64 (11)°. The mol-ecular structure is stabilized by an intra-molecular O-H⋯N hydrogen bond, which generates an S(6) ring motif. In the crystal, π-π stacking inter-actions [centroid-centroid distances = 3.6893 (14) Å] are observed.

Entities:  

Year:  2011        PMID: 22090978      PMCID: PMC3212321          DOI: 10.1107/S1600536811026122

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the pharmacological activity of Schiff base compounds, see: Shapiro (1998 ▶); Villar et al. (2004 ▶); Venugopal & Jayashree (2008 ▶); Pandey et al. (2003 ▶); Bhat et al. (2005 ▶); Wadher et al. (2009 ▶). For related structures, see: Fun et al. (2011a ▶,b ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H8Cl3NO M = 300.55 Monoclinic, a = 12.8847 (16) Å b = 6.9505 (9) Å c = 14.4265 (18) Å β = 96.612 (2)° V = 1283.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.70 mm−1 T = 296 K 0.36 × 0.19 × 0.14 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.785, T max = 0.908 10136 measured reflections 3782 independent reflections 2586 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.124 S = 1.02 3782 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026122/lh5276sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026122/lh5276Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026122/lh5276Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8Cl3NOF(000) = 608
Mr = 300.55Dx = 1.556 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3223 reflections
a = 12.8847 (16) Åθ = 2.9–30.0°
b = 6.9505 (9) ŵ = 0.70 mm1
c = 14.4265 (18) ÅT = 296 K
β = 96.612 (2)°Block, yellow
V = 1283.4 (3) Å30.36 × 0.19 × 0.14 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer3782 independent reflections
Radiation source: fine-focus sealed tube2586 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 30.2°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.785, Tmax = 0.908k = −9→9
10136 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0489P)2 + 0.6136P] where P = (Fo2 + 2Fc2)/3
3782 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.05175 (4)0.34050 (9)0.92951 (3)0.05264 (16)
Cl20.44455 (4)0.27949 (11)0.84597 (5)0.0669 (2)
Cl30.35845 (4)0.16620 (13)0.63858 (4)0.0723 (2)
O1−0.20343 (13)0.2343 (3)0.77771 (11)0.0562 (4)
N1−0.01212 (11)0.2621 (2)0.73161 (11)0.0370 (3)
C10.13702 (14)0.3001 (3)0.84736 (13)0.0368 (4)
C20.24358 (14)0.3061 (3)0.87539 (14)0.0427 (4)
H2A0.26850.33440.93690.051*
C30.31237 (14)0.2693 (3)0.81056 (15)0.0428 (4)
C40.27450 (14)0.2244 (3)0.71929 (14)0.0427 (4)
C50.16785 (14)0.2223 (3)0.69162 (13)0.0408 (4)
H5A0.14320.19310.63010.049*
C60.09726 (13)0.2636 (3)0.75513 (12)0.0346 (4)
C7−0.05235 (13)0.3079 (3)0.64944 (13)0.0372 (4)
H7A−0.00840.34370.60560.045*
C8−0.16440 (14)0.3060 (3)0.62241 (14)0.0387 (4)
C9−0.20251 (16)0.3408 (4)0.52901 (15)0.0514 (5)
H9A−0.15580.36400.48570.062*
C10−0.30845 (17)0.3411 (4)0.50043 (18)0.0628 (7)
H10A−0.33330.36230.43820.075*
C11−0.37712 (17)0.3093 (4)0.56579 (19)0.0638 (7)
H11A−0.44860.31090.54710.077*
C12−0.34176 (16)0.2754 (4)0.65778 (19)0.0561 (6)
H12A−0.38930.25490.70060.067*
C13−0.23490 (15)0.2716 (3)0.68736 (15)0.0430 (4)
H1O1−0.142 (2)0.238 (5)0.787 (2)0.077 (10)*
U11U22U33U12U13U23
Cl10.0521 (3)0.0677 (4)0.0399 (2)0.0004 (3)0.0130 (2)−0.0002 (2)
Cl20.0322 (2)0.0865 (5)0.0786 (4)−0.0046 (3)−0.0083 (2)0.0036 (3)
Cl30.0415 (3)0.1152 (6)0.0624 (4)0.0192 (3)0.0154 (2)−0.0023 (4)
O10.0452 (8)0.0715 (12)0.0537 (9)0.0035 (8)0.0128 (7)0.0064 (8)
N10.0303 (7)0.0408 (9)0.0400 (8)0.0040 (6)0.0037 (6)−0.0019 (7)
C10.0366 (8)0.0376 (10)0.0365 (8)−0.0005 (8)0.0054 (7)0.0016 (8)
C20.0388 (9)0.0464 (12)0.0407 (9)−0.0037 (8)−0.0044 (7)0.0007 (8)
C30.0300 (8)0.0448 (11)0.0518 (11)−0.0015 (8)−0.0036 (7)0.0060 (9)
C40.0319 (8)0.0509 (12)0.0459 (10)0.0077 (8)0.0070 (7)0.0037 (9)
C50.0337 (8)0.0502 (12)0.0379 (9)0.0065 (8)0.0012 (7)−0.0009 (8)
C60.0291 (7)0.0349 (9)0.0396 (9)0.0009 (7)0.0032 (6)0.0000 (7)
C70.0309 (8)0.0399 (10)0.0411 (9)0.0031 (7)0.0049 (7)−0.0029 (8)
C80.0305 (8)0.0391 (10)0.0460 (9)0.0031 (7)0.0020 (7)−0.0049 (8)
C90.0404 (10)0.0649 (15)0.0473 (10)0.0039 (10)−0.0016 (8)−0.0046 (10)
C100.0443 (11)0.0808 (19)0.0592 (13)0.0061 (11)−0.0114 (10)−0.0079 (13)
C110.0352 (10)0.0735 (18)0.0790 (17)0.0022 (11)−0.0098 (10)−0.0134 (14)
C120.0346 (9)0.0597 (15)0.0752 (15)−0.0016 (10)0.0109 (10)−0.0075 (12)
C130.0360 (9)0.0391 (11)0.0544 (11)0.0025 (8)0.0072 (8)−0.0047 (9)
Cl1—C11.7292 (19)C5—H5A0.9300
Cl2—C31.7222 (18)C7—C81.452 (2)
Cl3—C41.726 (2)C7—H7A0.9300
O1—C131.345 (3)C8—C131.399 (3)
O1—H1O10.79 (3)C8—C91.401 (3)
N1—C71.278 (2)C9—C101.380 (3)
N1—C61.411 (2)C9—H9A0.9300
C1—C21.387 (2)C10—C111.383 (4)
C1—C61.393 (2)C10—H10A0.9300
C2—C31.384 (3)C11—C121.373 (4)
C2—H2A0.9300C11—H11A0.9300
C3—C41.386 (3)C12—C131.394 (3)
C4—C51.386 (2)C12—H12A0.9300
C5—C61.393 (2)
C13—O1—H1O1110 (2)N1—C7—H7A119.0
C7—N1—C6120.55 (16)C8—C7—H7A119.0
C2—C1—C6121.80 (17)C13—C8—C9119.42 (18)
C2—C1—Cl1118.76 (14)C13—C8—C7121.61 (18)
C6—C1—Cl1119.44 (13)C9—C8—C7118.97 (18)
C3—C2—C1119.14 (17)C10—C9—C8120.8 (2)
C3—C2—H2A120.4C10—C9—H9A119.6
C1—C2—H2A120.4C8—C9—H9A119.6
C2—C3—C4120.04 (17)C9—C10—C11119.0 (2)
C2—C3—Cl2118.70 (15)C9—C10—H10A120.5
C4—C3—Cl2121.26 (16)C11—C10—H10A120.5
C3—C4—C5120.32 (18)C12—C11—C10121.3 (2)
C3—C4—Cl3120.94 (15)C12—C11—H11A119.4
C5—C4—Cl3118.73 (15)C10—C11—H11A119.4
C4—C5—C6120.60 (17)C11—C12—C13120.4 (2)
C4—C5—H5A119.7C11—C12—H12A119.8
C6—C5—H5A119.7C13—C12—H12A119.8
C1—C6—C5118.01 (16)O1—C13—C12118.5 (2)
C1—C6—N1118.57 (16)O1—C13—C8122.39 (18)
C5—C6—N1123.37 (16)C12—C13—C8119.1 (2)
N1—C7—C8122.10 (17)
C6—C1—C2—C3−1.9 (3)C7—N1—C6—C1151.17 (19)
Cl1—C1—C2—C3178.45 (16)C7—N1—C6—C5−31.6 (3)
C1—C2—C3—C4−0.9 (3)C6—N1—C7—C8179.28 (17)
C1—C2—C3—Cl2179.37 (16)N1—C7—C8—C136.2 (3)
C2—C3—C4—C52.1 (3)N1—C7—C8—C9−174.2 (2)
Cl2—C3—C4—C5−178.18 (17)C13—C8—C9—C10−0.2 (4)
C2—C3—C4—Cl3−176.72 (17)C7—C8—C9—C10−179.7 (2)
Cl2—C3—C4—Cl33.0 (3)C8—C9—C10—C111.0 (4)
C3—C4—C5—C6−0.5 (3)C9—C10—C11—C12−0.8 (4)
Cl3—C4—C5—C6178.34 (16)C10—C11—C12—C13−0.3 (4)
C2—C1—C6—C53.4 (3)C11—C12—C13—O1−178.8 (2)
Cl1—C1—C6—C5−176.92 (15)C11—C12—C13—C81.1 (4)
C2—C1—C6—N1−179.22 (18)C9—C8—C13—O1179.0 (2)
Cl1—C1—C6—N10.5 (3)C7—C8—C13—O1−1.5 (3)
C4—C5—C6—C1−2.2 (3)C9—C8—C13—C12−0.9 (3)
C4—C5—C6—N1−179.41 (19)C7—C8—C13—C12178.7 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N10.79 (3)1.94 (3)2.633 (2)146 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N10.79 (3)1.94 (3)2.633 (2)146 (3)
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