| Literature DB >> 21577870 |
Zeynep Keleşoğlu, Orhan Büyükgüngör, Ciğdem Albayrak, Mustafa Odabaşoğlu.
Abstract
The title compound, C(13)H(10)BrNO(2), exists as an enol-imine form in the crystal and adopts an E configuration with respect to the C=N double bond. The mol-ecule is close to planar, with a dihedral angle of 6.88 (14)° between the aromatic rings. Intra-molecular O-H⋯N and O-H⋯O hydrogen bonds generate S(6) and S(5) ring motifs, respectively. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen-bond inter-actions, forming R(2) (2)(10) and R(2) (2)(20) chains along [100]. ab initio Hartree-Fock (HF), density-functional theory (DFT) and semi-empirical (AM1 and PM3) calculations and full-geometry optimizations were also performed. Although there are some discrepancies between the experimental and calculated parameters, caused presumably by the O-H⋯O hydrogen-bond inter-actions, there is an acceptable general agreement between them.Entities:
Year: 2009 PMID: 21577870 PMCID: PMC2970385 DOI: 10.1107/S1600536809035053
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10BrNO2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 7185 reflections |
| θ = 1.3–26.2° | |
| µ = 3.50 mm−1 | |
| Plate, red | |
| 0.66 × 0.38 × 0.10 mm |
| Stoe IPDS-II diffractometer | 2212 independent reflections |
| Radiation source: fine-focus sealed tube | 1764 reflections with |
| graphite | |
| Detector resolution: 6.67 pixels mm-1 | θmax = 25.6°, θmin = 1.6° |
| rotation method scans | |
| Absorption correction: integration ( | |
| 7185 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 2212 reflections | Δρmax = 0.33 e Å−3 |
| 162 parameters | Δρmin = −0.42 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.2287 (5) | 0.59650 (12) | 0.38493 (9) | 0.0430 (5) | |
| C2 | 0.1687 (5) | 0.56587 (13) | 0.33762 (9) | 0.0441 (5) | |
| C3 | −0.0340 (6) | 0.51215 (13) | 0.33440 (10) | 0.0480 (6) | |
| C4 | −0.1727 (6) | 0.49065 (14) | 0.37771 (11) | 0.0543 (7) | |
| H4 | −0.3082 | 0.4553 | 0.3753 | 0.065* | |
| C5 | −0.1148 (6) | 0.52049 (15) | 0.42490 (11) | 0.0556 (7) | |
| H5 | −0.2106 | 0.5052 | 0.4539 | 0.067* | |
| C6 | 0.0848 (6) | 0.57283 (14) | 0.42865 (10) | 0.0524 (6) | |
| H6 | 0.1248 | 0.5927 | 0.4603 | 0.063* | |
| C7 | 0.4352 (5) | 0.65240 (13) | 0.38933 (9) | 0.0451 (6) | |
| H7 | 0.4674 | 0.6726 | 0.4212 | 0.054* | |
| C8 | 0.7753 (5) | 0.72987 (12) | 0.35557 (9) | 0.0409 (5) | |
| C9 | 0.8643 (5) | 0.75859 (13) | 0.40177 (9) | 0.0461 (6) | |
| H9 | 0.7918 | 0.7419 | 0.4325 | 0.055* | |
| C10 | 1.0603 (6) | 0.81192 (13) | 0.40147 (9) | 0.0475 (6) | |
| C11 | 1.1712 (6) | 0.83889 (14) | 0.35705 (10) | 0.0520 (6) | |
| H11 | 1.3031 | 0.8752 | 0.3578 | 0.062* | |
| C12 | 1.0810 (6) | 0.81048 (15) | 0.31139 (10) | 0.0572 (7) | |
| H12 | 1.1510 | 0.8283 | 0.2808 | 0.069* | |
| C13 | 0.8888 (6) | 0.75614 (15) | 0.31054 (10) | 0.0513 (6) | |
| H13 | 0.8342 | 0.7368 | 0.2794 | 0.062* | |
| N1 | 0.5747 (4) | 0.67489 (11) | 0.35080 (8) | 0.0442 (5) | |
| O1 | 0.2990 (5) | 0.58565 (11) | 0.29377 (7) | 0.0583 (5) | |
| O2 | −0.0900 (5) | 0.48050 (12) | 0.28892 (8) | 0.0684 (6) | |
| Br1 | 1.18395 (9) | 0.85040 (2) | 0.464746 (12) | 0.08086 (16) | |
| H1 | 0.415 (8) | 0.619 (2) | 0.3026 (13) | 0.088 (12)* | |
| H2 | −0.007 (10) | 0.499 (2) | 0.2666 (14) | 0.113 (16)* |
| C1 | 0.0352 (13) | 0.0422 (12) | 0.0517 (13) | 0.0035 (10) | −0.0009 (10) | 0.0026 (10) |
| C2 | 0.0396 (13) | 0.0415 (13) | 0.0513 (13) | −0.0004 (11) | 0.0019 (11) | 0.0055 (11) |
| C3 | 0.0454 (14) | 0.0416 (13) | 0.0570 (14) | −0.0023 (11) | −0.0068 (12) | 0.0033 (11) |
| C4 | 0.0431 (15) | 0.0433 (14) | 0.0764 (18) | −0.0048 (12) | 0.0014 (13) | 0.0124 (13) |
| C5 | 0.0503 (16) | 0.0549 (16) | 0.0616 (16) | −0.0008 (13) | 0.0088 (13) | 0.0107 (13) |
| C6 | 0.0495 (15) | 0.0553 (15) | 0.0525 (14) | 0.0032 (13) | 0.0019 (12) | 0.0019 (12) |
| C7 | 0.0432 (13) | 0.0457 (13) | 0.0465 (12) | 0.0027 (11) | −0.0039 (11) | −0.0036 (10) |
| C8 | 0.0359 (12) | 0.0393 (12) | 0.0476 (12) | 0.0023 (10) | −0.0044 (10) | 0.0006 (9) |
| C9 | 0.0475 (15) | 0.0472 (14) | 0.0436 (12) | −0.0054 (12) | −0.0012 (11) | 0.0028 (10) |
| C10 | 0.0485 (15) | 0.0441 (14) | 0.0498 (13) | −0.0009 (12) | −0.0058 (12) | −0.0038 (11) |
| C11 | 0.0490 (15) | 0.0440 (14) | 0.0630 (15) | −0.0050 (12) | 0.0027 (13) | −0.0010 (11) |
| C12 | 0.0615 (18) | 0.0578 (16) | 0.0524 (14) | −0.0089 (14) | 0.0103 (13) | 0.0035 (12) |
| C13 | 0.0551 (16) | 0.0548 (16) | 0.0441 (13) | −0.0062 (13) | −0.0012 (12) | −0.0012 (11) |
| N1 | 0.0396 (11) | 0.0440 (11) | 0.0490 (11) | −0.0024 (9) | −0.0028 (9) | 0.0001 (9) |
| O1 | 0.0626 (12) | 0.0612 (12) | 0.0512 (10) | −0.0231 (10) | 0.0022 (9) | −0.0014 (9) |
| O2 | 0.0769 (15) | 0.0665 (14) | 0.0618 (12) | −0.0291 (12) | −0.0049 (11) | −0.0011 (10) |
| Br1 | 0.1009 (3) | 0.0846 (2) | 0.05706 (19) | −0.0355 (2) | −0.01118 (17) | −0.01177 (16) |
| C1—C2 | 1.395 (3) | C8—C13 | 1.387 (3) |
| C1—C6 | 1.405 (4) | C8—C9 | 1.390 (3) |
| C1—C7 | 1.447 (4) | C8—N1 | 1.416 (3) |
| C2—O1 | 1.355 (3) | C9—C10 | 1.373 (4) |
| C2—C3 | 1.402 (3) | C9—H9 | 0.9300 |
| C3—O2 | 1.358 (3) | C10—C11 | 1.373 (4) |
| C3—C4 | 1.371 (4) | C10—Br1 | 1.900 (2) |
| C4—C5 | 1.384 (4) | C11—C12 | 1.377 (4) |
| C4—H4 | 0.9300 | C11—H11 | 0.9300 |
| C5—C6 | 1.374 (4) | C12—C13 | 1.375 (4) |
| C5—H5 | 0.9300 | C12—H12 | 0.9300 |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C7—N1 | 1.278 (3) | O1—H1 | 0.87 (4) |
| C7—H7 | 0.9300 | O2—H2 | 0.78 (4) |
| C2—C1—C6 | 119.3 (2) | C13—C8—C9 | 118.6 (2) |
| C2—C1—C7 | 120.9 (2) | C13—C8—N1 | 116.7 (2) |
| C6—C1—C7 | 119.8 (2) | C9—C8—N1 | 124.6 (2) |
| O1—C2—C1 | 122.8 (2) | C10—C9—C8 | 119.2 (2) |
| O1—C2—C3 | 117.5 (2) | C10—C9—H9 | 120.4 |
| C1—C2—C3 | 119.7 (2) | C8—C9—H9 | 120.4 |
| O2—C3—C4 | 119.9 (2) | C9—C10—C11 | 122.5 (2) |
| O2—C3—C2 | 120.5 (2) | C9—C10—Br1 | 119.09 (19) |
| C4—C3—C2 | 119.7 (2) | C11—C10—Br1 | 118.4 (2) |
| C3—C4—C5 | 121.3 (3) | C10—C11—C12 | 117.9 (2) |
| C3—C4—H4 | 119.4 | C10—C11—H11 | 121.0 |
| C5—C4—H4 | 119.3 | C12—C11—H11 | 121.0 |
| C6—C5—C4 | 119.6 (3) | C13—C12—C11 | 120.8 (3) |
| C6—C5—H5 | 120.2 | C13—C12—H12 | 119.6 |
| C4—C5—H5 | 120.2 | C11—C12—H12 | 119.6 |
| C5—C6—C1 | 120.5 (3) | C12—C13—C8 | 120.8 (2) |
| C5—C6—H6 | 119.8 | C12—C13—H13 | 119.6 |
| C1—C6—H6 | 119.8 | C8—C13—H13 | 119.6 |
| N1—C7—C1 | 122.1 (2) | C7—N1—C8 | 121.6 (2) |
| N1—C7—H7 | 118.9 | C2—O1—H1 | 105 (2) |
| C1—C7—H7 | 118.9 | C3—O2—H2 | 111 (3) |
| C6—C1—C2—O1 | −179.8 (2) | C6—C1—C7—N1 | 178.8 (2) |
| C7—C1—C2—O1 | 0.6 (4) | C13—C8—C9—C10 | 0.1 (4) |
| C6—C1—C2—C3 | 0.1 (4) | N1—C8—C9—C10 | −179.9 (2) |
| C7—C1—C2—C3 | −179.5 (2) | C8—C9—C10—C11 | 0.7 (4) |
| O1—C2—C3—O2 | 1.6 (4) | C8—C9—C10—Br1 | −179.41 (19) |
| C1—C2—C3—O2 | −178.3 (2) | C9—C10—C11—C12 | −0.4 (4) |
| O1—C2—C3—C4 | −179.6 (2) | Br1—C10—C11—C12 | 179.8 (2) |
| C1—C2—C3—C4 | 0.5 (4) | C10—C11—C12—C13 | −0.9 (4) |
| O2—C3—C4—C5 | 178.2 (3) | C11—C12—C13—C8 | 1.7 (4) |
| C2—C3—C4—C5 | −0.6 (4) | C9—C8—C13—C12 | −1.3 (4) |
| C3—C4—C5—C6 | 0.2 (4) | N1—C8—C13—C12 | 178.7 (2) |
| C4—C5—C6—C1 | 0.4 (4) | C1—C7—N1—C8 | 179.7 (2) |
| C2—C1—C6—C5 | −0.5 (4) | C13—C8—N1—C7 | −172.2 (2) |
| C7—C1—C6—C5 | 179.0 (2) | C9—C8—N1—C7 | 7.9 (4) |
| C2—C1—C7—N1 | −1.6 (4) |
| H··· | ||||
| O1—H1···N1 | 0.87 (4) | 1.81 (4) | 2.606 (3) | 151 (3) |
| O2—H2···O1 | 0.78 (4) | 2.31 (5) | 2.718 (3) | 113 (4) |
| O2—H2···O2i | 0.78 (4) | 2.48 (5) | 3.124 (3) | 141 (5) |
| O2—H2···O1ii | 0.78 (4) | 2.46 (4) | 2.986 (3) | 126 (4) |
| Parameters | X-ray | AM1 | PM3 | HF* | DFT/B3LYP* |
| C1—C7 | 1.447 (4) | 1.4659 | 1.4592 | 1.4655 | 1.4472 |
| C8—N1 | 1.416 (3) | 1.4103 | 1.431 | 1.4082 | 1.4071 |
| C7—N1 | 1.278 (3) | 1.2923 | 1.3028 | 1.2626 | 1.2947 |
| C2—O1 | 1.355 (3) | 1.3711 | 1.3612 | 1.3414 | 1.35 |
| C3—O2 | 1.358 (3) | 1.3749 | 1.3695 | 1.3472 | 1.3601 |
| C10—Br1 | 1.900 (2) | 1.8743 | 1.8676 | 1.899 | 1.9138 |
| O1—C2—C1 | 122.8 (2) | 126.384 | 124.0177 | 124.2818 | 123.5134 |
| N1—C7—C1 | 122.1 (2) | 123.752 | 119.6344 | 123.297 | 121.9975 |
| O2—C3—C4 | 119.9 (2) | 117.2553 | 115.9182 | 119.9887 | 120.7548 |
| O1—C2—C3 | 117.5 (2) | 113.7932 | 116.4985 | 115.8053 | 116.4318 |
| O2—C3—C2 | 120.5 (2) | 122.181 | 123.9237 | 119.978 | 119.4331 |
| C7—N1—C8 | 121.6 (2) | 121.8246 | 122.1744 | 120.3634 | 121.3341 |
| C12—C13—H13 | 119.6 | 119.7856 | 119.8376 | 120.8687 | 121.0058 |
| C8—C13—H13 | 119.6 | 120.1274 | 120.1469 | 119.0149 | 118.759 |
| C1—C7—N1—C8 | 179.7 (2) | -179.2308 | 179.9974 | -178.6515 | -177.5099 |
| C9—C8—N1—C7 | 7.9 (4) | 34.1092 | 0.0009 | 44.5418 | 35.1166 |
| C2—C1—C7—N1 | -1.6 (4) | 2.6542 | 0.0087 | 0.8066 | 0.3196 |
| N1—C8—C9—C10 | -179.9 (2) | -177.3895 | 179.9976 | 179.3862 | 179.4699 |
| C8—C9—C10—Br1 | -179.41 (19) | -179.8397 | -180.0011 | -179.9136 | -179.7804 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.87 (4) | 1.81 (4) | 2.606 (3) | 151 (3) |
| O2—H2⋯O1 | 0.78 (4) | 2.31 (5) | 2.718 (3) | 113 (4) |
| O2—H2⋯O2i | 0.78 (4) | 2.48 (5) | 3.124 (3) | 141 (5) |
| O2—H2⋯O1ii | 0.78 (4) | 2.46 (4) | 2.986 (3) | 126 (4) |
Symmetry codes: (i) ; (ii) .
| Parameters | X-ray | AM1 | PM3 | HF* | DFT/B3LYP* |
|---|---|---|---|---|---|
| C1—C7 | 1.447 (4) | 1.4659 | 1.4592 | 1.4655 | 1.4472 |
| C8—N1 | 1.416 (3) | 1.4103 | 1.431 | 1.4082 | 1.4071 |
| C7—N1 | 1.278 (3) | 1.2923 | 1.3028 | 1.2626 | 1.2947 |
| C2—O1 | 1.355 (3) | 1.3711 | 1.3612 | 1.3414 | 1.35 |
| C3—O2 | 1.358 (3) | 1.3749 | 1.3695 | 1.3472 | 1.3601 |
| C10—Br1 | 1.900 (2) | 1.8743 | 1.8676 | 1.899 | 1.9138 |
| O1—C2—C1 | 122.8 (2) | 126.384 | 124.0177 | 124.2818 | 123.5134 |
| N1—C7—C1 | 122.1 (2) | 123.752 | 119.6344 | 123.297 | 121.9975 |
| O2—C3—C4 | 119.9 (2) | 117.2553 | 115.9182 | 119.9887 | 120.7548 |
| O1—C2—C3 | 117.5 (2) | 113.7932 | 116.4985 | 115.8053 | 116.4318 |
| O2—C3—C2 | 120.5 (2) | 122.181 | 123.9237 | 119.978 | 119.4331 |
| C7—N1—C8 | 121.6 (2) | 121.8246 | 122.1744 | 120.3634 | 121.3341 |
| C12—C13—H13 | 119.6 | 119.7856 | 119.8376 | 120.8687 | 121.0058 |
| C8—C13—H13 | 119.6 | 120.1274 | 120.1469 | 119.0149 | 118.759 |
| C1—C7—N1—C8 | 179.7 (2) | −179.2308 | 179.9974 | −178.6515 | −177.5099 |
| C9—C8—N1—C7 | 7.9 (4) | 34.1092 | 0.0009 | 44.5418 | 35.1166 |
| C2—C1—C7—N1 | −1.6 (4) | 2.6542 | 0.0087 | 0.8066 | 0.3196 |
| N1—C8—C9—C10 | −179.9 (2) | −177.3895 | 179.9976 | 179.3862 | 179.4699 |
| C8—C9—C10—Br1 | −179.41 (19) | −179.8397 | −180.0011 | −179.9136 | −179.7804 |
*6-31G(d,p).