Literature DB >> 25878800

Crystal structure of (2-methyl-1-phenyl-sulfon-yl-1H-indol-3-yl)(phen-yl)methanone.

M Umadevi1, V Saravanan2, R Yamuna3, A K Mohanakrishnan2, G Chakkaravarthi4.   

Abstract

In the title compound, C22H17NO3S, the sulfonyl-bound phenyl ring is almost orthogonal to the indole ring system, making a dihedral angle of 84.89 (7)°. The carbonyl-bound phenyl ring forms a dihedral angle of 57.32 (5)° with the indole ring system. The two phenyl rings are inclined at 52.68 (7)°. The S atom has a distorted tetra-hedral configuration. In the crystal, weak C-H⋯O inter-actions link the mol-ecules, forming a helical chain along the b-axis direction.

Entities:  

Keywords:  C—H⋯O hydrogen bonds; Indole derivative; crystal structure

Year:  2015        PMID: 25878800      PMCID: PMC4384539          DOI: 10.1107/S2056989014028059

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

In a continuation of our studies on indole derivatives, which possess various biological activities such as anti­hepatitis B virus (Chai et al., 2006 ▸) and anti­bacterial (Nieto et al., 2005 ▸) etc, we herein report the synthesis and the crystal structure of the title compound, (I).

Structural commentary

The mol­ecular structure of the title compound is shown in Fig. 1 ▸. The sulfonyl-bound phenyl ring (C1–C6) is almost orthogonal to the indole ring system (N1/C7–C14), making a dihedral angle of 84.89 (7)°. The carbonyl-bound phenyl ring (C17–C22) forms a dihedral angle of 57.32 (5)° with the indole ring system. The two phenyl rings are inclined at an angle of 52.68 (7)°. Atom S1 has a distorted tetra­hedral configuration with angles O1—S1—O2 [119.97 (10)°] and N1—S1—C1 [104.99 (8)°] differing from the ideal tetra­hedral value. As a result of the electron-withdrawing character of the phenyl­sulfonyl group, the bond lengths N1—C7 [1.420 (2) Å] and N1—C14 [1.419 (2) Å] are longer than the mean value of 1.355 (14) Å (Allen et al., 1987 ▸). The geometric parameters of (I) agree well with those in similar reported structures (Chakkaravarthi et al., 2008 ▸, 2009 ▸).
Figure 1

The mol­ecular structure of the title compound, with atom labels and 30% probability displacement ellipsoids for non-H atoms.

Supra­molecular features

In the crystal, weak C—H⋯O inter­actions link the mol­ecules, forming a helical chain along the b-axis direction (Table 1 ▸ and Fig. 2 ▸). No significant π–π or C—H⋯π inter­actions are observed.
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C15H15CO1i 0.962.593.525(3)165

Symmetry code: (i) .

Figure 2

The packing diagram of the title compound, viewed down the a axis. Inter­molecular hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted.

Database survey

A search of the Cambridge Structural Database (Version 5.35, last update May 2014; Groom & Allen, 2014 ▸). indicated 123 compounds having a phenyl­sulfonyl-1H-indole moiety. Of these compounds, several similar structures have been reported earlier, i.e. ethyl 2-acet­oxy­methyl-1-phenyl­sulfonyl-1H-indole-3-carboxyl­ate (Gunasekaran et al., 2009 ▸), 3-iodo-2-methyl-1-phenyl­sulfonyl-1H-indole (Ramathilagam et al., 2011 ▸) and 1-(2-bromo­methyl-1-phenyl­sulfonyl-1H-indol-3-yl)propan-1-one (Umadevi et al., 2013 ▸). In these structures, the sulfonyl-bound phenyl ring is almost orthogonal to the indole ring system, the dihedral angles of 83.35 (5), 82.84 (9) and 89.91 (11)°, respectively, being are comparable with that in the title compound.

Synthesis and crystallization

To a solution of benzoyl chloride (1.55 g, 11.07 mmol) in dry DCM (25 ml), SnCl4 (2.88 g, 10.10 mmol) at 273 K was added dropwise. To this, phenyl­sulfonyl-1H-indole (2 g, 7.38 mmol) in dry DCM (10 ml) was added dropwise (5 min) and stirred for 30 min at the same temperature. After completion of the reaction (monitored by TLC), it was poured over ice–water (50 ml) and extracted with saturated aqueous NaHCO3 (2 × 30 ml) and brine (2 × 30 ml), dried (Na2SO4) and concentrated under reduced pressure. Then, the crude product was crystallized from methanol to afford single crystals of the title compound suitable for X-ray diffraction.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms for Caromatic and Cmeth­yl were positioned geometrically and refined using a riding model, with C—H = 0.93 and 0.97 Å, respectively with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC22H17NO3S
M r 375.43
Crystal system, space groupOrthorhombic, P212121
Temperature (K)295
a, b, c ()8.9989(7), 11.0036(9), 18.4209(16)
V (3)1824.0(3)
Z 4
Radiation typeMo K
(mm1)0.20
Crystal size (mm)0.28 0.24 0.20
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Sheldrick, 1996)
T min, T max 0.946, 0.961
No. of measured, independent and observed [I > 2(I)] reflections26244, 5020, 3493
R int 0.034
(sin /)max (1)0.708
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.036, 0.091, 1.02
No. of reflections5020
No. of parameters246
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.17, 0.25
Absolute structureFlack (1983), 2109 Friedel pairs
Absolute structure parameter0.01(7)

Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014028059/is5387sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014028059/is5387Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014028059/is5387Isup3.cml CCDC reference: 1040926 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H17NO3SF(000) = 784
Mr = 375.43Dx = 1.367 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 812 reflections
a = 8.9989 (7) Åθ = 2.2–30.2°
b = 11.0036 (9) ŵ = 0.20 mm1
c = 18.4209 (16) ÅT = 295 K
V = 1824.0 (3) Å3Block, colourless
Z = 40.28 × 0.24 × 0.20 mm
Bruker APEXII CCD diffractometer5020 independent reflections
Radiation source: fine-focus sealed tube3493 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω and φ scanθmax = 30.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.946, Tmax = 0.961k = −14→14
26244 measured reflectionsl = −25→24
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.036w = 1/[σ2(Fo2) + (0.0353P)2 + 0.2764P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.17 e Å3
5020 reflectionsΔρmin = −0.25 e Å3
246 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0039 (8)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2109 Friedel pairs
Secondary atom site location: difference Fourier mapAbsolute structure parameter: −0.01 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2369 (2)0.81475 (17)0.72517 (9)0.0469 (4)
C20.2009 (3)0.69315 (19)0.72539 (12)0.0623 (6)
H20.10290.66840.73180.075*
C30.3119 (4)0.6089 (2)0.71605 (14)0.0779 (8)
H30.28910.52650.71600.093*
C40.4552 (4)0.6457 (3)0.70682 (13)0.0797 (8)
H40.52950.58810.69990.096*
C50.4904 (3)0.7661 (3)0.70759 (15)0.0815 (8)
H50.58890.79030.70250.098*
C60.3812 (3)0.8512 (2)0.71586 (13)0.0658 (6)
H60.40470.93350.71520.079*
C70.1037 (2)1.05176 (15)0.60528 (9)0.0405 (4)
C80.0471 (2)1.03514 (16)0.53755 (10)0.0417 (4)
C9−0.0431 (2)0.92698 (17)0.53745 (10)0.0421 (4)
C10−0.1247 (2)0.86956 (18)0.48385 (12)0.0566 (5)
H10−0.12580.89980.43670.068*
C11−0.2046 (3)0.7663 (2)0.50152 (15)0.0667 (6)
H11−0.25930.72660.46590.080*
C12−0.2040 (3)0.72186 (19)0.57128 (15)0.0651 (6)
H12−0.25880.65240.58190.078*
C13−0.1248 (2)0.77715 (17)0.62583 (13)0.0549 (5)
H13−0.12510.74660.67290.066*
C14−0.0439 (2)0.88084 (16)0.60774 (11)0.0429 (4)
C150.2119 (2)1.14443 (19)0.63034 (11)0.0521 (5)
H15A0.24451.19210.58970.078*
H15B0.29591.10470.65200.078*
H15C0.16541.19640.66550.078*
C160.0714 (2)1.10898 (16)0.47141 (10)0.0462 (4)
C170.0621 (2)1.24405 (16)0.47428 (10)0.0425 (4)
C18−0.0098 (2)1.30428 (18)0.52995 (12)0.0513 (5)
H18−0.05031.26050.56830.062*
C19−0.0215 (3)1.4297 (2)0.52874 (14)0.0667 (6)
H19−0.06991.47000.56630.080*
C200.0380 (3)1.4945 (2)0.47233 (15)0.0684 (7)
H200.02961.57870.47160.082*
C210.1096 (3)1.4360 (2)0.41704 (13)0.0633 (6)
H210.15111.48050.37920.076*
C220.1204 (2)1.31043 (19)0.41723 (11)0.0512 (5)
H220.16711.27070.37890.061*
N10.04557 (17)0.95902 (13)0.65071 (8)0.0436 (4)
O1−0.02677 (18)0.87038 (14)0.76860 (8)0.0700 (4)
O20.16072 (19)1.03169 (12)0.76515 (8)0.0632 (4)
O30.0922 (2)1.05764 (13)0.41366 (7)0.0699 (4)
S10.09803 (6)0.92484 (4)0.73525 (3)0.04934 (14)
U11U22U33U12U13U23
C10.0585 (12)0.0484 (10)0.0339 (9)0.0054 (9)0.0015 (9)0.0024 (9)
C20.0712 (14)0.0513 (12)0.0644 (14)0.0075 (11)−0.0075 (12)0.0094 (11)
C30.103 (2)0.0516 (14)0.0789 (17)0.0201 (14)−0.0139 (16)−0.0001 (12)
C40.098 (2)0.0856 (19)0.0556 (14)0.0464 (17)−0.0027 (14)−0.0015 (13)
C50.0655 (17)0.095 (2)0.0836 (19)0.0196 (15)0.0100 (14)0.0062 (16)
C60.0626 (14)0.0606 (13)0.0743 (15)0.0054 (12)0.0048 (12)−0.0017 (11)
C70.0405 (9)0.0364 (9)0.0448 (9)0.0027 (8)0.0077 (8)0.0009 (7)
C80.0453 (10)0.0362 (9)0.0436 (10)0.0040 (8)0.0065 (8)−0.0015 (8)
C90.0441 (9)0.0346 (9)0.0476 (10)0.0067 (8)0.0068 (8)−0.0029 (8)
C100.0608 (13)0.0529 (11)0.0560 (12)−0.0004 (11)0.0006 (11)−0.0103 (10)
C110.0660 (15)0.0526 (13)0.0813 (16)−0.0068 (11)0.0007 (13)−0.0177 (12)
C120.0555 (14)0.0402 (11)0.0995 (19)−0.0051 (10)0.0087 (13)−0.0040 (12)
C130.0497 (12)0.0417 (10)0.0732 (13)0.0019 (10)0.0084 (11)0.0106 (10)
C140.0395 (9)0.0350 (9)0.0541 (11)0.0043 (8)0.0071 (8)0.0014 (8)
C150.0556 (12)0.0503 (11)0.0505 (11)−0.0049 (10)0.0045 (10)0.0007 (9)
C160.0526 (12)0.0440 (10)0.0422 (10)0.0019 (9)0.0055 (9)0.0012 (8)
C170.0403 (10)0.0430 (10)0.0443 (10)−0.0004 (8)−0.0011 (8)0.0036 (8)
C180.0530 (12)0.0469 (11)0.0539 (12)0.0055 (9)0.0062 (10)0.0011 (10)
C190.0682 (14)0.0498 (12)0.0821 (16)0.0095 (12)−0.0013 (13)−0.0096 (13)
C200.0693 (15)0.0408 (11)0.095 (2)−0.0042 (11)−0.0175 (15)0.0054 (13)
C210.0614 (13)0.0547 (12)0.0736 (14)−0.0124 (12)−0.0097 (12)0.0233 (12)
C220.0468 (11)0.0554 (12)0.0512 (11)−0.0008 (10)−0.0007 (9)0.0098 (9)
N10.0454 (9)0.0403 (8)0.0452 (8)0.0020 (7)0.0056 (7)0.0064 (7)
O10.0734 (10)0.0768 (10)0.0599 (9)0.0050 (8)0.0309 (8)0.0169 (8)
O20.0924 (11)0.0505 (8)0.0466 (8)0.0073 (7)0.0019 (8)−0.0101 (7)
O30.1119 (13)0.0526 (8)0.0453 (8)0.0015 (10)0.0186 (9)−0.0054 (7)
S10.0614 (3)0.0477 (3)0.0389 (2)0.0074 (2)0.0117 (2)0.0022 (2)
C1—C61.369 (3)C12—H120.9300
C1—C21.377 (3)C13—C141.394 (3)
C1—S11.750 (2)C13—H130.9300
C2—C31.373 (3)C14—N11.419 (2)
C2—H20.9300C15—H15A0.9600
C3—C41.362 (4)C15—H15B0.9600
C3—H30.9300C15—H15C0.9600
C4—C51.363 (4)C16—O31.219 (2)
C4—H40.9300C16—C171.490 (3)
C5—C61.366 (3)C17—C181.382 (3)
C5—H50.9300C17—C221.383 (3)
C6—H60.9300C18—C191.384 (3)
C7—C81.360 (2)C18—H180.9300
C7—N11.420 (2)C19—C201.369 (3)
C7—C151.483 (3)C19—H190.9300
C8—C91.441 (3)C20—C211.366 (3)
C8—C161.481 (2)C20—H200.9300
C9—C101.383 (3)C21—C221.385 (3)
C9—C141.391 (3)C21—H210.9300
C10—C111.384 (3)C22—H220.9300
C10—H100.9300N1—S11.6701 (16)
C11—C121.375 (4)O1—S11.4134 (15)
C11—H110.9300O2—S11.4156 (15)
C12—C131.374 (3)
C6—C1—C2120.5 (2)C9—C14—C13121.60 (19)
C6—C1—S1119.18 (17)C9—C14—N1107.17 (16)
C2—C1—S1120.28 (17)C13—C14—N1131.22 (19)
C3—C2—C1119.0 (2)C7—C15—H15A109.5
C3—C2—H2120.5C7—C15—H15B109.5
C1—C2—H2120.5H15A—C15—H15B109.5
C4—C3—C2120.3 (2)C7—C15—H15C109.5
C4—C3—H3119.9H15A—C15—H15C109.5
C2—C3—H3119.9H15B—C15—H15C109.5
C3—C4—C5120.5 (3)O3—C16—C8119.11 (16)
C3—C4—H4119.7O3—C16—C17120.13 (17)
C5—C4—H4119.7C8—C16—C17120.66 (16)
C4—C5—C6120.0 (3)C18—C17—C22119.23 (18)
C4—C5—H5120.0C18—C17—C16122.10 (17)
C6—C5—H5120.0C22—C17—C16118.58 (17)
C5—C6—C1119.7 (2)C17—C18—C19120.1 (2)
C5—C6—H6120.1C17—C18—H18119.9
C1—C6—H6120.1C19—C18—H18119.9
C8—C7—N1107.82 (15)C20—C19—C18120.1 (2)
C8—C7—C15128.60 (16)C20—C19—H19120.0
N1—C7—C15123.54 (16)C18—C19—H19120.0
C7—C8—C9108.87 (16)C21—C20—C19120.3 (2)
C7—C8—C16128.73 (17)C21—C20—H20119.8
C9—C8—C16122.38 (17)C19—C20—H20119.8
C10—C9—C14119.69 (18)C20—C21—C22120.1 (2)
C10—C9—C8132.63 (18)C20—C21—H21120.0
C14—C9—C8107.64 (17)C22—C21—H21120.0
C9—C10—C11118.9 (2)C17—C22—C21120.1 (2)
C9—C10—H10120.6C17—C22—H22119.9
C11—C10—H10120.6C21—C22—H22119.9
C12—C11—C10120.6 (2)C14—N1—C7108.41 (14)
C12—C11—H11119.7C14—N1—S1122.94 (12)
C10—C11—H11119.7C7—N1—S1127.40 (13)
C13—C12—C11121.9 (2)O1—S1—O2119.97 (10)
C13—C12—H12119.1O1—S1—N1106.03 (10)
C11—C12—H12119.1O2—S1—N1106.76 (8)
C12—C13—C14117.3 (2)O1—S1—C1108.67 (10)
C12—C13—H13121.4O2—S1—C1109.36 (10)
C14—C13—H13121.4N1—S1—C1104.99 (8)
C6—C1—C2—C3−0.1 (3)C8—C16—C17—C18−19.3 (3)
S1—C1—C2—C3178.83 (18)O3—C16—C17—C22−19.3 (3)
C1—C2—C3—C40.1 (4)C8—C16—C17—C22164.22 (18)
C2—C3—C4—C50.8 (4)C22—C17—C18—C19−0.6 (3)
C3—C4—C5—C6−1.6 (4)C16—C17—C18—C19−177.1 (2)
C4—C5—C6—C11.6 (4)C17—C18—C19—C200.0 (3)
C2—C1—C6—C5−0.8 (3)C18—C19—C20—C21−0.2 (4)
S1—C1—C6—C5−179.70 (19)C19—C20—C21—C221.0 (4)
N1—C7—C8—C9−2.92 (19)C18—C17—C22—C211.4 (3)
C15—C7—C8—C9174.62 (18)C16—C17—C22—C21178.01 (19)
N1—C7—C8—C16178.71 (17)C20—C21—C22—C17−1.6 (3)
C15—C7—C8—C16−3.8 (3)C9—C14—N1—C7−1.39 (19)
C7—C8—C9—C10−179.9 (2)C13—C14—N1—C7179.84 (19)
C16—C8—C9—C10−1.4 (3)C9—C14—N1—S1−169.49 (12)
C7—C8—C9—C142.1 (2)C13—C14—N1—S111.7 (3)
C16—C8—C9—C14−179.42 (16)C8—C7—N1—C142.70 (19)
C14—C9—C10—C11−0.5 (3)C15—C7—N1—C14−174.99 (17)
C8—C9—C10—C11−178.31 (19)C8—C7—N1—S1170.12 (13)
C9—C10—C11—C120.5 (3)C15—C7—N1—S1−7.6 (2)
C10—C11—C12—C13−0.1 (4)C14—N1—S1—O1−40.28 (16)
C11—C12—C13—C14−0.1 (3)C7—N1—S1—O1153.97 (15)
C10—C9—C14—C130.2 (3)C14—N1—S1—O2−169.29 (14)
C8—C9—C14—C13178.55 (17)C7—N1—S1—O224.96 (17)
C10—C9—C14—N1−178.67 (16)C14—N1—S1—C174.67 (16)
C8—C9—C14—N1−0.37 (19)C7—N1—S1—C1−91.08 (16)
C12—C13—C14—C90.1 (3)C6—C1—S1—O1−159.68 (17)
C12—C13—C14—N1178.71 (19)C2—C1—S1—O121.40 (19)
C7—C8—C16—O3137.3 (2)C6—C1—S1—O2−27.02 (19)
C9—C8—C16—O3−40.9 (3)C2—C1—S1—O2154.07 (17)
C7—C8—C16—C17−46.2 (3)C6—C1—S1—N187.22 (18)
C9—C8—C16—C17135.63 (18)C2—C1—S1—N1−91.69 (17)
O3—C16—C17—C18157.2 (2)
D—H···AD—HH···AD···AD—H···A
C15—H15C···O1i0.962.593.525 (3)165
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Journal:  Eur J Med Chem       Date:  2005-04       Impact factor: 6.514

5.  Ethyl 2-acetoxy-methyl-1-phenyl-sulfonyl-1H-indole-3-carboxyl-ate.

Authors:  B Gunasekaran; Radhakrishnan Sureshbabu; A K Mohanakrishnan; G Chakkaravarthi; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

6.  4-Bromo-meth-yl-1-phenyl-sulfon-yl-1H-indole.

Authors:  G Chakkaravarthi; Radhakrishnan Sureshbabu; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-29

7.  6-Meth-oxy-9-phenyl-sulfonyl-2-(2-thien-yl)-9H-thieno[2,3-b]carbazole.

Authors:  G Chakkaravarthi; A Marx; V Dhayalan; A K Mohanakrishnan; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06

8.  3-Iodo-2-methyl-1-phenyl-sulfonyl-1H-indole.

Authors:  C Ramathilagam; Velu Saravanan; A K Mohanakrishnan; G Chakkaravarthi; P R Umarani; V Manivannan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-12

9.  1-(2-Bromo-meth-yl-1-phenyl-sulfonyl-1H-indol-3-yl)propan-1-one.

Authors:  M Umadevi; V Saravanan; R Yamuna; A K Mohanakrishnan; G Chakkaravarthi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-23

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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