| Literature DB >> 25878796 |
Selvarasu Muthulakshmi1, Doraisamyraja Kalaivani1.
Abstract
In the crystal structure of the title mol-ecular salt,Entities:
Keywords: TGA/DTA studies; crystal structure; hydrogen bonding; pyridinium; styphnate
Year: 2015 PMID: 25878796 PMCID: PMC4384612 DOI: 10.1107/S2056989014027704
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of the title molecular salt, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details).
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N4H4 | 0.90(2) | 2.22(4) | 2.946(4) | 137(4) |
| N4H4 | 0.90(2) | 1.88(4) | 2.625(3) | 138(5) |
| O8H8 | 0.82 | 2.48 | 2.905(3) | 113 |
| O8H8 | 0.82 | 1.87 | 2.563(3) | 141 |
| O8H8 | 0.82 | 2.63 | 3.110(4) | 119 |
| C8H8O6ii | 0.93 | 2.58 | 3.352(5) | 141 |
| C8H8O8iii | 0.93 | 2.63 | 3.405(4) | 141 |
| C10H10O2iv | 0.93 | 2.43 | 3.139(4) | 133 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2A view along the a axis of the crystal packing of the title molecular salt. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details).
Figure 3A view along the b axis of the crystal packing of the title molecular salt. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details).
Experimental details
| Crystal data | |
| Chemical formula | C5H6N+C6H2N3O8 |
|
| 324.21 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 5.9506(2), 8.1608(3), 27.0175(10) |
| () | 90.379(5) |
|
| 1311.99(8) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.14 |
| Crystal size (mm) | 0.35 0.35 0.30 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.951, 0.959 |
| No. of measured, independent and observed [ | 14733, 2296, 1771 |
|
| 0.047 |
| (sin /)max (1) | 0.595 |
| Refinement | |
|
| 0.059, 0.198, 1.14 |
| No. of reflections | 2296 |
| No. of parameters | 212 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.32, 0.34 |
Computer programs: APEX2, SAINT and XPREP (Bruker, 2004 ▸), SIR92 (Altomare et al., 1993 ▸), SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸).
| C5H6N+·C6H2N3O8− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 5354 reflections |
| θ = 2.6–26.1° | |
| µ = 0.14 mm−1 | |
| β = 90.379 (5)° | Block, yellow |
| 0.35 × 0.35 × 0.30 mm | |
| Bruker Kappa APEXII CCD diffractometer | 2296 independent reflections |
| Radiation source: fine-focus sealed tube | 1771 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 25.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 14733 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2296 reflections | (Δ/σ)max < 0.001 |
| 212 parameters | Δρmax = 0.32 e Å−3 |
| 1 restraint | Δρmin = −0.34 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.5386 (5) | 0.1613 (3) | 0.08054 (10) | 0.0338 (6) | |
| C2 | 0.6344 (5) | 0.1587 (3) | 0.12957 (10) | 0.0335 (6) | |
| C3 | 0.5003 (5) | 0.0711 (3) | 0.16385 (10) | 0.0330 (6) | |
| C4 | 0.3031 (4) | −0.0084 (3) | 0.15364 (10) | 0.0331 (6) | |
| C5 | 0.2257 (4) | −0.0036 (3) | 0.10427 (10) | 0.0342 (7) | |
| C6 | 0.3424 (5) | 0.0820 (4) | 0.06890 (10) | 0.0372 (7) | |
| H6 | 0.2873 | 0.0862 | 0.0366 | 0.045* | |
| C7 | 1.2035 (5) | 0.4297 (4) | 0.17352 (12) | 0.0451 (8) | |
| H7 | 1.1200 | 0.3709 | 0.1964 | 0.054* | |
| C8 | 1.3941 (6) | 0.5094 (4) | 0.18837 (12) | 0.0485 (8) | |
| H8 | 1.4407 | 0.5063 | 0.2213 | 0.058* | |
| C9 | 1.5148 (6) | 0.5936 (4) | 0.15407 (12) | 0.0476 (8) | |
| H9 | 1.6461 | 0.6474 | 0.1635 | 0.057* | |
| C10 | 1.4438 (6) | 0.5993 (4) | 0.10590 (12) | 0.0488 (8) | |
| H10 | 1.5250 | 0.6577 | 0.0825 | 0.059* | |
| C11 | 1.2528 (6) | 0.5186 (4) | 0.09267 (12) | 0.0471 (8) | |
| H11 | 1.2027 | 0.5209 | 0.0600 | 0.057* | |
| N1 | 0.6481 (5) | 0.2501 (3) | 0.04118 (9) | 0.0477 (7) | |
| N2 | 0.0254 (4) | −0.0877 (3) | 0.09001 (10) | 0.0445 (7) | |
| N3 | 0.5834 (4) | 0.0636 (3) | 0.21455 (9) | 0.0436 (7) | |
| N4 | 1.1371 (4) | 0.4356 (3) | 0.12684 (10) | 0.0419 (6) | |
| O1 | 0.8179 (5) | 0.3281 (4) | 0.04960 (9) | 0.0730 (9) | |
| O2 | 0.5667 (5) | 0.2440 (5) | 0.00022 (10) | 0.0953 (12) | |
| O3 | −0.0431 (5) | −0.0774 (4) | 0.04783 (9) | 0.0732 (8) | |
| O4 | −0.0736 (4) | −0.1705 (3) | 0.12168 (9) | 0.0589 (7) | |
| O5 | 0.5195 (6) | 0.1641 (3) | 0.24370 (9) | 0.0800 (10) | |
| O6 | 0.7049 (5) | −0.0493 (5) | 0.22574 (10) | 0.0913 (11) | |
| O7 | 0.8146 (3) | 0.2234 (3) | 0.14326 (8) | 0.0493 (6) | |
| O8 | 0.1994 (4) | −0.0845 (3) | 0.19071 (8) | 0.0478 (6) | |
| H8A | 0.0816 | −0.1247 | 0.1805 | 0.072* | |
| H4A | 1.006 (6) | 0.388 (7) | 0.1186 (18) | 0.118 (19)* |
| C1 | 0.0332 (15) | 0.0309 (14) | 0.0374 (15) | −0.0026 (12) | 0.0065 (12) | −0.0001 (11) |
| C2 | 0.0283 (14) | 0.0298 (13) | 0.0424 (15) | 0.0001 (11) | 0.0028 (12) | −0.0035 (11) |
| C3 | 0.0324 (15) | 0.0339 (14) | 0.0327 (14) | −0.0014 (12) | −0.0003 (11) | −0.0011 (11) |
| C4 | 0.0317 (15) | 0.0281 (13) | 0.0397 (15) | −0.0009 (11) | 0.0066 (12) | −0.0007 (11) |
| C5 | 0.0261 (14) | 0.0323 (14) | 0.0441 (16) | −0.0023 (11) | −0.0006 (12) | −0.0039 (12) |
| C6 | 0.0367 (16) | 0.0374 (15) | 0.0374 (15) | 0.0010 (12) | −0.0014 (12) | −0.0043 (12) |
| C7 | 0.0468 (19) | 0.0385 (16) | 0.0503 (18) | −0.0043 (14) | 0.0104 (14) | 0.0022 (13) |
| C8 | 0.053 (2) | 0.0475 (18) | 0.0455 (17) | −0.0064 (16) | −0.0028 (15) | 0.0011 (14) |
| C9 | 0.0424 (18) | 0.0414 (17) | 0.059 (2) | −0.0093 (14) | −0.0024 (15) | −0.0018 (15) |
| C10 | 0.0491 (19) | 0.0419 (17) | 0.055 (2) | −0.0082 (15) | 0.0100 (15) | 0.0081 (14) |
| C11 | 0.053 (2) | 0.0450 (17) | 0.0432 (17) | −0.0018 (15) | −0.0018 (15) | 0.0019 (14) |
| N1 | 0.0497 (16) | 0.0525 (16) | 0.0408 (15) | −0.0080 (13) | 0.0037 (12) | 0.0065 (12) |
| N2 | 0.0343 (14) | 0.0446 (14) | 0.0544 (16) | −0.0056 (12) | 0.0010 (12) | −0.0080 (12) |
| N3 | 0.0395 (15) | 0.0515 (16) | 0.0398 (14) | −0.0069 (12) | 0.0005 (11) | 0.0036 (12) |
| N4 | 0.0349 (14) | 0.0362 (13) | 0.0547 (16) | −0.0041 (11) | 0.0008 (12) | −0.0050 (11) |
| O1 | 0.0702 (18) | 0.091 (2) | 0.0575 (15) | −0.0443 (16) | 0.0055 (13) | 0.0103 (14) |
| O2 | 0.092 (2) | 0.147 (3) | 0.0465 (15) | −0.054 (2) | −0.0129 (15) | 0.0350 (17) |
| O3 | 0.0594 (17) | 0.102 (2) | 0.0584 (16) | −0.0280 (15) | −0.0190 (13) | −0.0023 (15) |
| O4 | 0.0472 (14) | 0.0603 (15) | 0.0692 (16) | −0.0234 (12) | 0.0075 (12) | −0.0048 (12) |
| O5 | 0.133 (3) | 0.0616 (16) | 0.0453 (14) | 0.0037 (17) | −0.0071 (15) | −0.0118 (13) |
| O6 | 0.089 (2) | 0.124 (3) | 0.0600 (17) | 0.052 (2) | −0.0210 (15) | 0.0014 (17) |
| O7 | 0.0364 (12) | 0.0594 (14) | 0.0521 (13) | −0.0177 (10) | −0.0026 (10) | 0.0031 (10) |
| O8 | 0.0440 (13) | 0.0533 (13) | 0.0464 (12) | −0.0163 (10) | 0.0059 (10) | 0.0059 (10) |
| C1—C6 | 1.369 (4) | C8—H8 | 0.9300 |
| C1—C2 | 1.439 (4) | C9—C10 | 1.366 (4) |
| C1—N1 | 1.445 (4) | C9—H9 | 0.9300 |
| C2—O7 | 1.249 (3) | C10—C11 | 1.359 (5) |
| C2—C3 | 1.420 (4) | C10—H10 | 0.9300 |
| C3—C4 | 1.367 (4) | C11—N4 | 1.339 (4) |
| C3—N3 | 1.454 (4) | C11—H11 | 0.9300 |
| C4—O8 | 1.333 (3) | N1—O2 | 1.206 (4) |
| C4—C5 | 1.409 (4) | N1—O1 | 1.215 (4) |
| C5—C6 | 1.376 (4) | N2—O3 | 1.211 (3) |
| C5—N2 | 1.426 (4) | N2—O4 | 1.242 (3) |
| C6—H6 | 0.9300 | N3—O5 | 1.200 (4) |
| C7—N4 | 1.320 (4) | N3—O6 | 1.208 (4) |
| C7—C8 | 1.366 (5) | N4—H4A | 0.90 (2) |
| C7—H7 | 0.9300 | O8—H8A | 0.8200 |
| C8—C9 | 1.362 (5) | ||
| C6—C1—C2 | 122.4 (3) | C7—C8—H8 | 120.6 |
| C6—C1—N1 | 117.1 (3) | C8—C9—C10 | 120.3 (3) |
| C2—C1—N1 | 120.5 (2) | C8—C9—H9 | 119.9 |
| O7—C2—C3 | 120.3 (3) | C10—C9—H9 | 119.9 |
| O7—C2—C1 | 126.9 (3) | C11—C10—C9 | 119.1 (3) |
| C3—C2—C1 | 112.8 (2) | C11—C10—H10 | 120.4 |
| C4—C3—C2 | 126.3 (3) | C9—C10—H10 | 120.4 |
| C4—C3—N3 | 117.1 (2) | N4—C11—C10 | 119.8 (3) |
| C2—C3—N3 | 116.5 (2) | N4—C11—H11 | 120.1 |
| O8—C4—C3 | 118.1 (2) | C10—C11—H11 | 120.1 |
| O8—C4—C5 | 125.0 (2) | O2—N1—O1 | 121.5 (3) |
| C3—C4—C5 | 116.9 (2) | O2—N1—C1 | 118.3 (3) |
| C6—C5—C4 | 120.5 (2) | O1—N1—C1 | 120.2 (3) |
| C6—C5—N2 | 118.8 (3) | O3—N2—O4 | 121.9 (3) |
| C4—C5—N2 | 120.7 (3) | O3—N2—C5 | 119.8 (3) |
| C1—C6—C5 | 120.9 (3) | O4—N2—C5 | 118.4 (3) |
| C1—C6—H6 | 119.5 | O5—N3—O6 | 123.2 (3) |
| C5—C6—H6 | 119.5 | O5—N3—C3 | 118.8 (3) |
| N4—C7—C8 | 120.4 (3) | O6—N3—C3 | 117.8 (3) |
| N4—C7—H7 | 119.8 | C7—N4—C11 | 121.7 (3) |
| C8—C7—H7 | 119.8 | C7—N4—H4A | 118 (3) |
| C9—C8—C7 | 118.7 (3) | C11—N4—H4A | 120 (3) |
| C9—C8—H8 | 120.6 | C4—O8—H8A | 109.5 |
| C6—C1—C2—O7 | 178.0 (3) | N2—C5—C6—C1 | −178.3 (3) |
| N1—C1—C2—O7 | −2.3 (4) | N4—C7—C8—C9 | −0.6 (5) |
| C6—C1—C2—C3 | −2.0 (4) | C7—C8—C9—C10 | 0.8 (5) |
| N1—C1—C2—C3 | 177.7 (2) | C8—C9—C10—C11 | −0.7 (5) |
| O7—C2—C3—C4 | −178.4 (3) | C9—C10—C11—N4 | 0.3 (5) |
| C1—C2—C3—C4 | 1.6 (4) | C6—C1—N1—O2 | −3.0 (5) |
| O7—C2—C3—N3 | 0.6 (4) | C2—C1—N1—O2 | 177.3 (3) |
| C1—C2—C3—N3 | −179.4 (2) | C6—C1—N1—O1 | 177.1 (3) |
| C2—C3—C4—O8 | −179.9 (3) | C2—C1—N1—O1 | −2.6 (4) |
| N3—C3—C4—O8 | 1.1 (4) | C6—C5—N2—O3 | −2.8 (4) |
| C2—C3—C4—C5 | 0.3 (4) | C4—C5—N2—O3 | 177.3 (3) |
| N3—C3—C4—C5 | −178.7 (2) | C6—C5—N2—O4 | 177.0 (3) |
| O8—C4—C5—C6 | 178.3 (3) | C4—C5—N2—O4 | −2.9 (4) |
| C3—C4—C5—C6 | −1.9 (4) | C4—C3—N3—O5 | −87.2 (4) |
| O8—C4—C5—N2 | −1.8 (4) | C2—C3—N3—O5 | 93.7 (3) |
| C3—C4—C5—N2 | 178.0 (2) | C4—C3—N3—O6 | 89.1 (4) |
| C2—C1—C6—C5 | 0.6 (4) | C2—C3—N3—O6 | −90.0 (4) |
| N1—C1—C6—C5 | −179.2 (3) | C8—C7—N4—C11 | 0.2 (5) |
| C4—C5—C6—C1 | 1.5 (4) | C10—C11—N4—C7 | 0.0 (5) |
| H··· | ||||
| N4—H4 | 0.90 (2) | 2.22 (4) | 2.946 (4) | 137 (4) |
| N4—H4 | 0.90 (2) | 1.88 (4) | 2.625 (3) | 138 (5) |
| O8—H8 | 0.82 | 2.48 | 2.905 (3) | 113 |
| O8—H8 | 0.82 | 1.87 | 2.563 (3) | 141 |
| O8—H8 | 0.82 | 2.63 | 3.110 (4) | 119 |
| C8—H8···O6ii | 0.93 | 2.58 | 3.352 (5) | 141 |
| C8—H8···O8iii | 0.93 | 2.63 | 3.405 (4) | 141 |
| C10—H10···O2iv | 0.93 | 2.43 | 3.139 (4) | 133 |