Literature DB >> 21588914

Morpholinium styphnate.

D Kalaivani1, R Malarvizhi.   

Abstract

In the title mol-ecular salt (systematic name: morpholinium 3-hy-droxy-2,4,6-trinitro-phenolate), C(4)H(10)NO(+)·C(6)H(2)N(3)O(8) (-), two of the nitro groups of the anion are close to parallel with the plane of the benzene ring [dihedral angles = 3.46 (9) and 11.60 (10)°] and one is almost perpendicular [dihedral angle = 82.23 (8)°]. An intra-molecular O-H⋯O hydrogen bond occurs in the anion. The morpholinium cation has a slightly distorted chair conformation. In the crystal, the components are linked by simple N-H⋯O and trifurcated N-H⋯(O,O,O) hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588914      PMCID: PMC3009074          DOI: 10.1107/S1600536810038304

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related mol­ecular salts, see: Radha et al. (1987 ▶).

Experimental

Crystal data

C4H10NO+·C6H2N3O8 − M = 332.24 Triclinic, a = 7.680 (5) Å b = 7.973 (5) Å c = 11.852 (5) Å α = 94.785 (5)° β = 99.016 (5)° γ = 108.188 (5)° V = 674.1 (7) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.30 × 0.16 × 0.16 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.957, T max = 0.977 16214 measured reflections 3841 independent reflections 2944 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.157 S = 1.06 3841 reflections 225 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038304/hb5640sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038304/hb5640Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO+·C6H2N3O8Z = 2
Mr = 332.24F(000) = 344
Triclinic, P1Dx = 1.637 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.680 (5) ÅCell parameters from 5851 reflections
b = 7.973 (5) Åθ = 1.8–29.8°
c = 11.852 (5) ŵ = 0.15 mm1
α = 94.785 (5)°T = 293 K
β = 99.016 (5)°Prism, yellow
γ = 108.188 (5)°0.30 × 0.16 × 0.16 mm
V = 674.1 (7) Å3
Bruker Kappa APEXII CCD diffractometer3841 independent reflections
Radiation source: fine-focus sealed tube2944 reflections with I > 2σ(I)
graphiteRint = 0.023
ω and φ scanθmax = 29.8°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −10→10
Tmin = 0.957, Tmax = 0.977k = −11→11
16214 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.157w = 1/[σ2(Fo2) + (0.0867P)2 + 0.1583P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3841 reflectionsΔρmax = 0.77 e Å3
225 parametersΔρmin = −0.38 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.049 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.48003 (18)0.27015 (18)−0.13460 (12)0.0293 (3)
C20.31234 (18)0.11938 (18)−0.14972 (11)0.0287 (3)
C30.24207 (17)0.02930 (17)−0.06486 (12)0.0270 (3)
C40.33875 (18)0.09746 (17)0.05024 (11)0.0274 (3)
C50.49948 (18)0.24441 (18)0.07302 (12)0.0288 (3)
C60.57105 (17)0.32628 (17)−0.01487 (12)0.0278 (3)
C70.7665 (3)0.2429 (2)−0.41273 (15)0.0457 (4)
H7A0.70220.1253−0.39540.055*
H7B0.86440.2344−0.45330.055*
C80.6313 (3)0.3086 (3)−0.48707 (15)0.0497 (4)
H8A0.57890.2278−0.55890.060*
H8B0.52980.3097−0.44790.060*
C90.7903 (3)0.6028 (3)−0.40700 (17)0.0536 (5)
H9A0.68800.6021−0.36810.064*
H9B0.84540.7225−0.42440.064*
C100.9345 (2)0.5533 (2)−0.32858 (15)0.0453 (4)
H10A1.04050.5600−0.36520.054*
H10B0.97840.6355−0.25710.054*
N10.74511 (16)0.47391 (16)0.01785 (11)0.0332 (3)
N20.21517 (18)0.0548 (2)−0.26913 (11)0.0398 (3)
N30.27441 (17)0.01490 (17)0.14458 (11)0.0352 (3)
N40.84911 (19)0.36922 (19)−0.30416 (11)0.0373 (3)
O10.81876 (17)0.54823 (17)−0.05681 (12)0.0544 (4)
O20.81128 (17)0.52044 (18)0.12078 (11)0.0533 (3)
O30.1114 (3)0.1265 (3)−0.31268 (14)0.0847 (6)
O40.2437 (3)−0.0695 (3)−0.31820 (14)0.0838 (6)
O50.14855 (16)−0.13353 (15)0.12339 (10)0.0440 (3)
O60.3436 (2)0.0883 (2)0.24304 (10)0.0587 (4)
O70.53339 (16)0.33703 (18)−0.21939 (10)0.0463 (3)
O80.08817 (14)−0.11441 (14)−0.09399 (10)0.0371 (3)
O90.7206 (2)0.4823 (2)−0.51108 (10)0.0534 (3)
H4A0.762 (3)0.371 (3)−0.2657 (19)0.053 (6)*
H4B0.931 (3)0.333 (3)−0.2646 (18)0.047 (5)*
H50.562 (3)0.285 (3)0.1470 (19)0.048 (5)*
H80.079 (4)−0.160 (3)−0.026 (2)0.069 (7)*
U11U22U33U12U13U23
C10.0251 (6)0.0320 (6)0.0319 (7)0.0093 (5)0.0077 (5)0.0079 (5)
C20.0269 (6)0.0312 (6)0.0266 (6)0.0088 (5)0.0033 (5)0.0025 (5)
C30.0242 (6)0.0244 (6)0.0323 (7)0.0082 (5)0.0050 (5)0.0033 (5)
C40.0273 (6)0.0269 (6)0.0288 (6)0.0088 (5)0.0066 (5)0.0067 (5)
C50.0273 (6)0.0283 (6)0.0297 (7)0.0090 (5)0.0030 (5)0.0033 (5)
C60.0221 (5)0.0250 (6)0.0352 (7)0.0065 (5)0.0045 (5)0.0049 (5)
C70.0533 (9)0.0447 (9)0.0365 (8)0.0164 (7)0.0019 (7)0.0028 (7)
C80.0473 (9)0.0627 (11)0.0332 (8)0.0175 (8)−0.0039 (7)0.0003 (7)
C90.0680 (12)0.0471 (10)0.0506 (10)0.0233 (9)0.0134 (9)0.0136 (8)
C100.0451 (9)0.0448 (9)0.0385 (8)0.0042 (7)0.0080 (7)0.0061 (7)
N10.0245 (5)0.0284 (6)0.0452 (7)0.0076 (4)0.0049 (5)0.0047 (5)
N20.0351 (6)0.0491 (8)0.0297 (6)0.0079 (5)0.0050 (5)0.0014 (5)
N30.0343 (6)0.0384 (6)0.0337 (6)0.0106 (5)0.0084 (5)0.0124 (5)
N40.0343 (6)0.0486 (8)0.0272 (6)0.0108 (6)0.0046 (5)0.0101 (5)
O10.0419 (6)0.0498 (7)0.0578 (8)−0.0079 (5)0.0139 (6)0.0147 (6)
O20.0385 (6)0.0535 (7)0.0484 (7)−0.0044 (5)−0.0036 (5)−0.0010 (6)
O30.0871 (12)0.1311 (16)0.0459 (8)0.0682 (12)−0.0171 (8)−0.0025 (9)
O40.1088 (14)0.0908 (13)0.0509 (9)0.0491 (11)−0.0020 (9)−0.0255 (8)
O50.0432 (6)0.0382 (6)0.0473 (7)0.0038 (5)0.0130 (5)0.0167 (5)
O60.0635 (8)0.0691 (9)0.0290 (6)0.0013 (7)0.0071 (5)0.0107 (6)
O70.0364 (6)0.0621 (8)0.0379 (6)0.0070 (5)0.0117 (5)0.0204 (5)
O80.0320 (5)0.0316 (5)0.0389 (6)−0.0003 (4)0.0047 (4)0.0040 (4)
O90.0640 (8)0.0711 (9)0.0337 (6)0.0321 (7)0.0077 (5)0.0185 (6)
C1—O71.2426 (17)C8—H8B0.9700
C1—C21.4356 (19)C9—O91.416 (2)
C1—C61.446 (2)C9—C101.503 (3)
C2—C31.3665 (19)C9—H9A0.9700
C2—N21.4603 (19)C9—H9B0.9700
C3—O81.3378 (17)C10—N41.482 (2)
C3—C41.4194 (19)C10—H10A0.9700
C4—C51.3817 (19)C10—H10B0.9700
C4—N31.4214 (17)N1—O11.2203 (17)
C5—C61.3719 (19)N1—O21.2233 (18)
C5—H50.91 (2)N2—O31.197 (2)
C6—N11.4498 (18)N2—O41.203 (2)
C7—N41.484 (2)N3—O61.2184 (18)
C7—C81.502 (3)N3—O51.2482 (18)
C7—H7A0.9700N4—H4A0.87 (2)
C7—H7B0.9700N4—H4B0.86 (2)
C8—O91.416 (3)O8—H80.91 (3)
C8—H8A0.9700
O7—C1—C2120.48 (13)O9—C9—C10111.16 (15)
O7—C1—C6126.99 (13)O9—C9—H9A109.4
C2—C1—C6112.53 (11)C10—C9—H9A109.4
C3—C2—C1126.43 (12)O9—C9—H9B109.4
C3—C2—N2118.38 (12)C10—C9—H9B109.4
C1—C2—N2115.13 (12)H9A—C9—H9B108.0
O8—C3—C2119.07 (12)N4—C10—C9108.79 (14)
O8—C3—C4124.16 (12)N4—C10—H10A109.9
C2—C3—C4116.77 (12)C9—C10—H10A109.9
C5—C4—C3120.65 (12)N4—C10—H10B109.9
C5—C4—N3118.42 (12)C9—C10—H10B109.9
C3—C4—N3120.92 (12)H10A—C10—H10B108.3
C6—C5—C4120.95 (13)O1—N1—O2122.51 (13)
C6—C5—H5119.1 (13)O1—N1—C6119.61 (13)
C4—C5—H5119.9 (13)O2—N1—C6117.88 (12)
C5—C6—C1122.56 (12)O3—N2—O4123.56 (16)
C5—C6—N1116.61 (13)O3—N2—C2118.88 (15)
C1—C6—N1120.83 (12)O4—N2—C2117.55 (15)
N4—C7—C8109.05 (15)O6—N3—O5121.80 (13)
N4—C7—H7A109.9O6—N3—C4119.89 (13)
C8—C7—H7A109.9O5—N3—C4118.30 (13)
N4—C7—H7B109.9C10—N4—C7110.99 (13)
C8—C7—H7B109.9C10—N4—H4A107.0 (14)
H7A—C7—H7B108.3C7—N4—H4A109.7 (14)
O9—C8—C7111.04 (15)C10—N4—H4B110.8 (14)
O9—C8—H8A109.4C7—N4—H4B107.9 (14)
C7—C8—H8A109.4H4A—N4—H4B110.4 (19)
O9—C8—H8B109.4C3—O8—H8103.0 (16)
C7—C8—H8B109.4C8—O9—C9109.86 (13)
H8A—C8—H8B108.0
O7—C1—C2—C3177.37 (14)C2—C1—C6—N1178.50 (11)
C6—C1—C2—C3−2.0 (2)N4—C7—C8—O957.88 (19)
O7—C1—C2—N20.1 (2)O9—C9—C10—N4−58.2 (2)
C6—C1—C2—N2−179.23 (12)C5—C6—N1—O1177.61 (13)
C1—C2—C3—O8−176.85 (13)C1—C6—N1—O1−2.3 (2)
N2—C2—C3—O80.29 (19)C5—C6—N1—O2−3.30 (19)
C1—C2—C3—C43.7 (2)C1—C6—N1—O2176.81 (13)
N2—C2—C3—C4−179.14 (12)C3—C2—N2—O399.3 (2)
O8—C3—C4—C5178.49 (12)C1—C2—N2—O3−83.3 (2)
C2—C3—C4—C5−2.12 (19)C3—C2—N2—O4−80.3 (2)
O8—C3—C4—N3−0.6 (2)C1—C2—N2—O497.2 (2)
C2—C3—C4—N3178.84 (12)C5—C4—N3—O610.8 (2)
C3—C4—C5—C6−1.0 (2)C3—C4—N3—O6−170.13 (14)
N3—C4—C5—C6178.09 (12)C5—C4—N3—O5−168.37 (13)
C4—C5—C6—C12.8 (2)C3—C4—N3—O510.7 (2)
C4—C5—C6—N1−177.07 (12)C9—C10—N4—C754.78 (19)
O7—C1—C6—C5179.29 (14)C8—C7—N4—C10−54.73 (19)
C2—C1—C6—C5−1.38 (19)C7—C8—O9—C9−61.7 (2)
O7—C1—C6—N1−0.8 (2)C10—C9—O9—C862.0 (2)
D—H···AD—HH···AD···AD—H···A
O8—H8···O50.91 (3)1.75 (3)2.571 (2)149 (2)
N4—H4A···O70.87 (2)1.87 (2)2.715 (2)164 (2)
N4—H4B···O2i0.86 (2)2.31 (2)2.962 (2)132.4 (17)
N4—H4B···O5ii0.86 (2)2.42 (2)2.967 (2)121.5 (17)
N4—H4B···O3iii0.86 (2)2.54 (2)3.206 (3)134.3 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8⋯O50.91 (3)1.75 (3)2.571 (2)149 (2)
N4—H4A⋯O70.87 (2)1.87 (2)2.715 (2)164 (2)
N4—H4B⋯O2i0.86 (2)2.31 (2)2.962 (2)132.4 (17)
N4—H4B⋯O5ii0.86 (2)2.42 (2)2.967 (2)121.5 (17)
N4—H4B⋯O3iii0.86 (2)2.54 (2)3.206 (3)134.3 (17)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  2-Meth-oxy-anilinium 3-hy-droxy-2,4,6-trinitro-phenolate.

Authors:  Doraisamyraja Kalaivani; Rangasamy Malarvizhi; Kaliyaperumal Thanigaimani; Packianathan Thomas Muthiah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-23

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3.  Crystal structure of 1,10-phenanthrolinium 3-hy-droxy-2,4,6-tri-nitro-phenolate.

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