Literature DB >> 25878130

Localized auxin peaks in concentration-based transport models of the shoot apical meristem.

Delphine Draelants1, Daniele Avitabile2, Wim Vanroose3.   

Abstract

We study the formation of auxin peaks in a generic class of concentration-based auxin transport models, posed on static plant tissues. Using standard asymptotic analysis, we prove that, on bounded domains, auxin peaks are not formed via a Turing instability in the active transport parameter, but via simple corrections to the homogeneous steady state. When the active transport is small, the geometry of the tissue encodes the peaks' amplitude and location: peaks arise where cells have fewer neighbours, that is, at the boundary of the domain. We test our theory and perform numerical bifurcation analysis on two models that are known to generate auxin patterns for biologically plausible parameter values. In the same parameter regimes, we find that realistic tissues are capable of generating a multitude of stationary patterns, with a variable number of auxin peaks, that can be selected by different initial conditions or by quasi-static changes in the active transport parameter. The competition between active transport and production rate determines whether peaks remain localized or cover the entire domain. In particular, changes in the auxin production that are fast with respect to the cellular life cycle affect the auxin peak distribution, switching from localized spots to fully patterned states. We relate the occurrence of localized patterns to a snaking bifurcation structure, which is known to arise in a wide variety of nonlinear media, but has not yet been reported in plant models.
© 2015 The Author(s) Published by the Royal Society. All rights reserved.

Keywords:  auxin patterns; auxin transport model; localized patterns; numerical bifurcation analysis; snaking

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Year:  2015        PMID: 25878130      PMCID: PMC4424673          DOI: 10.1098/rsif.2014.1407

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  42 in total

1.  On evaluating models in Computational Morphodynamics.

Authors:  Henrik Jönsson; Jérémy Gruel; Pawel Krupinski; Carl Troein
Journal:  Curr Opin Plant Biol       Date:  2011-10-13       Impact factor: 7.834

2.  Quantitative predictions on auxin-induced polar distribution of PIN proteins during vein formation in leaves.

Authors:  K Alim; E Frey
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-22       Impact factor: 1.890

3.  Self-organization of the vascular system in plant leaves: inter-dependent dynamics of auxin flux and carrier proteins.

Authors:  Francois G Feugier; A Mochizuki; Y Iwasa
Journal:  J Theor Biol       Date:  2005-10-21       Impact factor: 2.691

4.  An auxin-driven polarized transport model for phyllotaxis.

Authors:  Henrik Jönsson; Marcus G Heisler; Bruce E Shapiro; Elliot M Meyerowitz; Eric Mjolsness
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-13       Impact factor: 11.205

5.  A plausible model of phyllotaxis.

Authors:  Richard S Smith; Soazig Guyomarc'h; Therese Mandel; Didier Reinhardt; Cris Kuhlemeier; Przemyslaw Prusinkiewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

Review 6.  Computer models of auxin transport: a review and commentary.

Authors:  Eric M Kramer
Journal:  J Exp Bot       Date:  2007-04-12       Impact factor: 6.992

Review 7.  Phyllotaxis.

Authors:  Cris Kuhlemeier
Journal:  Trends Plant Sci       Date:  2007-03-26       Impact factor: 18.313

8.  Homoclinic snaking: structure and stability.

Authors:  John Burke; Edgar Knobloch
Journal:  Chaos       Date:  2007-09       Impact factor: 3.642

9.  Canalization without flux sensors: a traveling-wave hypothesis.

Authors:  Roeland M H Merks; Yves Van de Peer; Dirk Inzé; Gerrit T S Beemster
Journal:  Trends Plant Sci       Date:  2007-08-31       Impact factor: 18.313

10.  Numerical bifurcation analysis of the pattern formation in a cell based auxin transport model.

Authors:  Delphine Draelants; Jan Broeckhove; Gerrit T S Beemster; Wim Vanroose
Journal:  J Math Biol       Date:  2012-09-27       Impact factor: 2.259

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  2 in total

1.  Modeling Plant Tissue Development Using VirtualLeaf.

Authors:  Claudiu-Cristi Antonovici; Guacimo Y Peerdeman; Harold B Wolff; Roeland M H Merks
Journal:  Methods Mol Biol       Date:  2022

2.  Scaling relations for auxin waves.

Authors:  Bente Hilde Bakker; Timothy E Faver; Hermen Jan Hupkes; Roeland M H Merks; Jelle van der Voort
Journal:  J Math Biol       Date:  2022-09-26       Impact factor: 2.164

  2 in total

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