Literature DB >> 22000039

On evaluating models in Computational Morphodynamics.

Henrik Jönsson1, Jérémy Gruel, Pawel Krupinski, Carl Troein.   

Abstract

Recent advances in experimental plant biology have led to an increased potential to investigate plant development at a systems level. The emerging research field of Computational Morphodynamics has the aim to lead this development by combining dynamic spatial experimental data with computational models of molecular networks, growth, and mechanics in a multicellular context. The increased number of published models may lead to a diversification of our understanding of the systems, and methods for evaluating, comparing, and sharing models are main challenges for the future. We will discuss this problem using ideas originating from physics and use recent computational models of plant development as examples.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22000039     DOI: 10.1016/j.pbi.2011.09.007

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  6 in total

1.  Localized auxin peaks in concentration-based transport models of the shoot apical meristem.

Authors:  Delphine Draelants; Daniele Avitabile; Wim Vanroose
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 2.  Systems analysis of shoot apical meristem growth and development: integrating hormonal and mechanical signaling.

Authors:  James A H Murray; Angharad Jones; Christophe Godin; Jan Traas
Journal:  Plant Cell       Date:  2012-10-30       Impact factor: 11.277

3.  Modelling the development and arrangement of the primary vascular structure in plants.

Authors:  Fabrizio Cartenì; Francesco Giannino; Fritz Hans Schweingruber; Stefano Mazzoleni
Journal:  Ann Bot       Date:  2014-09       Impact factor: 4.357

4.  MorphoGraphX: A platform for quantifying morphogenesis in 4D.

Authors:  Pierre Barbier de Reuille; Anne-Lise Routier-Kierzkowska; Daniel Kierzkowski; George W Bassel; Thierry Schüpbach; Gerardo Tauriello; Namrata Bajpai; Sören Strauss; Alain Weber; Annamaria Kiss; Agata Burian; Hugo Hofhuis; Aleksandra Sapala; Marcin Lipowczan; Maria B Heimlicher; Sarah Robinson; Emmanuelle M Bayer; Konrad Basler; Petros Koumoutsakos; Adrienne H K Roeder; Tinri Aegerter-Wilmsen; Naomi Nakayama; Miltos Tsiantis; Angela Hay; Dorota Kwiatkowska; Ioannis Xenarios; Cris Kuhlemeier; Richard S Smith
Journal:  Elife       Date:  2015-05-06       Impact factor: 8.140

5.  DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution.

Authors:  Guillaume Cerutti; Olivier Ali; Christophe Godin
Journal:  Front Plant Sci       Date:  2017-03-29       Impact factor: 5.753

6.  Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.

Authors:  Molly Megraw; Sayan Mukherjee; Uwe Ohler
Journal:  Genome Biol       Date:  2013-08-23       Impact factor: 13.583

  6 in total

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