Literature DB >> 17431022

Computer models of auxin transport: a review and commentary.

Eric M Kramer1.   

Abstract

With the recent proliferation of computer models of auxin transport, it is important that plant biologists understand something about these techniques and how to evaluate them. The paper begins with a brief introduction to the parts of a computer model, followed by a discussion of the limitations of the most common auxin modelling technique. Lastly, several recent models of organ initiation in the shoot apical meristem (i.e. phyllotaxis) are reviewed. The cell and molecular biology of phyllotaxis is now understood well enough that computer models can go beyond a simple 'proof of principle' and start to provide insights into gene function.

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Year:  2007        PMID: 17431022     DOI: 10.1093/jxb/erm060

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  21 in total

1.  Cell polarity in plants: Linking PIN polarity generation mechanisms to morphogenic auxin gradients.

Authors:  Pankaj Dhonukshe
Journal:  Commun Integr Biol       Date:  2009-03

Review 2.  How a plant builds leaves.

Authors:  Siobhan A Braybrook; Cris Kuhlemeier
Journal:  Plant Cell       Date:  2010-04-27       Impact factor: 11.277

3.  Quantitative predictions on auxin-induced polar distribution of PIN proteins during vein formation in leaves.

Authors:  K Alim; E Frey
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-22       Impact factor: 1.890

4.  Integration of transport-based models for phyllotaxis and midvein formation.

Authors:  Emmanuelle M Bayer; Richard S Smith; Therese Mandel; Naomi Nakayama; Michael Sauer; Przemyslaw Prusinkiewicz; Cris Kuhlemeier
Journal:  Genes Dev       Date:  2009-02-01       Impact factor: 11.361

5.  Localized auxin peaks in concentration-based transport models of the shoot apical meristem.

Authors:  Delphine Draelants; Daniele Avitabile; Wim Vanroose
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

6.  Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants.

Authors:  Silvia Grigolon; Peter Sollich; Olivier C Martin
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 7.  Racemose inflorescences of monocots: structural and morphogenetic interaction at the flower/inflorescence level.

Authors:  Margarita V Remizowa; Paula J Rudall; Vladimir V Choob; Dmitry D Sokoloff
Journal:  Ann Bot       Date:  2012-11-20       Impact factor: 4.357

8.  ERECTA family genes regulate auxin transport in the shoot apical meristem and forming leaf primordia.

Authors:  Ming-Kun Chen; Rebecca L Wilson; Klaus Palme; Franck Anicet Ditengou; Elena D Shpak
Journal:  Plant Physiol       Date:  2013-07-02       Impact factor: 8.340

9.  The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana.

Authors:  Yamel Ugartechea-Chirino; Ranjan Swarup; Kamal Swarup; Benjamin Péret; Morag Whitworth; Malcolm Bennett; Sue Bougourd
Journal:  Ann Bot       Date:  2009-12-01       Impact factor: 4.357

10.  Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis.

Authors:  Philip B Brewer; Elizabeth A Dun; Brett J Ferguson; Catherine Rameau; Christine A Beveridge
Journal:  Plant Physiol       Date:  2009-03-25       Impact factor: 8.340

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