Literature DB >> 25871932

An active atmospheric methane sink in high Arctic mineral cryosols.

M C Y Lau1, B T Stackhouse1, A C Layton2, A Chauhan2, T A Vishnivetskaya2, K Chourey3, J Ronholm4, N C S Mykytczuk5, P C Bennett6, G Lamarche-Gagnon4, N Burton1, W H Pollard7, C R Omelon6, D M Medvigy1, R L Hettich3, S M Pfiffner2, L G Whyte4, T C Onstott1.   

Abstract

Methane (CH4) emission by carbon-rich cryosols at the high latitudes in Northern Hemisphere has been studied extensively. In contrast, data on the CH4 emission potential of carbon-poor cryosols is limited, despite their spatial predominance. This work employs CH4 flux measurements in the field and under laboratory conditions to show that the mineral cryosols at Axel Heiberg Island in the Canadian high Arctic consistently consume atmospheric CH4. Omics analyses present the first molecular evidence of active atmospheric CH4-oxidizing bacteria (atmMOB) in permafrost-affected cryosols, with the prevalent atmMOB genotype in our acidic mineral cryosols being closely related to Upland Soil Cluster α. The atmospheric (atm) CH4 uptake at the study site increases with ground temperature between 0 °C and 18 °C. Consequently, the atm CH4 sink strength is predicted to increase by a factor of 5-30 as the Arctic warms by 5-15 °C over a century. We demonstrate that acidic mineral cryosols are a previously unrecognized potential of CH4 sink that requires further investigation to determine its potential impact on larger scales. This study also calls attention to the poleward distribution of atmMOB, as well as to the potential influence of microbial atm CH4 oxidation, in the context of regional CH4 flux models and global warming.

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Year:  2015        PMID: 25871932      PMCID: PMC4511939          DOI: 10.1038/ismej.2015.13

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  34 in total

1.  First genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenase.

Authors:  Peter Ricke; Michael Kube; Satoshi Nakagawa; Christoph Erkel; Richard Reinhardt; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

2.  Abundance, distribution and potential activity of methane oxidizing bacteria in permafrost soils from the Lena Delta, Siberia.

Authors:  Susanne Liebner; Dirk Wagner
Journal:  Environ Microbiol       Date:  2007-01       Impact factor: 5.491

3.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

Review 4.  Molecular biology and regulation of methane monooxygenase.

Authors:  J C Murrell; B Gilbert; I R McDonald
Journal:  Arch Microbiol       Date:  2000 May-Jun       Impact factor: 2.552

5.  The total carbon column observing network.

Authors:  Debra Wunch; Geoffrey C Toon; Jean-François L Blavier; Rebecca A Washenfelder; Justus Notholt; Brian J Connor; David W T Griffith; Vanessa Sherlock; Paul O Wennberg
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-05-28       Impact factor: 4.226

6.  Improved attribution of climate forcing to emissions.

Authors:  Drew T Shindell; Greg Faluvegi; Dorothy M Koch; Gavin A Schmidt; Nadine Unger; Susanne E Bauer
Journal:  Science       Date:  2009-10-30       Impact factor: 47.728

7.  Oxidation of methane by a biological dicopper centre.

Authors:  Ramakrishnan Balasubramanian; Stephen M Smith; Swati Rawat; Liliya A Yatsunyk; Timothy L Stemmler; Amy C Rosenzweig
Journal:  Nature       Date:  2010-04-21       Impact factor: 49.962

8.  The quest for atmospheric methane oxidizers in forest soils.

Authors:  Steffen Kolb
Journal:  Environ Microbiol Rep       Date:  2009-07-14       Impact factor: 3.541

9.  MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads.

Authors:  Toshiaki Namiki; Tsuyoshi Hachiya; Hideaki Tanaka; Yasubumi Sakakibara
Journal:  Nucleic Acids Res       Date:  2012-07-19       Impact factor: 16.971

10.  Metagenomes from thawing low-soil-organic-carbon mineral cryosols and permafrost of the canadian high arctic.

Authors:  Archana Chauhan; Alice C Layton; Tatiana A Vishnivetskaya; Daniel Williams; Susan M Pfiffner; Bhanu Rekepalli; Brandon Stackhouse; Maggie C Y Lau; Tommy J Phelps; Nadia Mykytczuk; Jennifer Ronholm; Lyle Whyte; Tullis C Onstott; Gary S Sayler
Journal:  Genome Announc       Date:  2014-11-20
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  17 in total

1.  Predominance of Anaerobic, Spore-Forming Bacteria in Metabolically Active Microbial Communities from Ancient Siberian Permafrost.

Authors:  Renxing Liang; Maggie Lau; Tatiana Vishnivetskaya; Karen G Lloyd; Wei Wang; Jessica Wiggins; Jennifer Miller; Susan Pfiffner; Elizaveta M Rivkina; Tullis C Onstott
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

2.  In Situ Field Sequencing and Life Detection in Remote (79°26'N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities.

Authors:  J Goordial; Ianina Altshuler; Katherine Hindson; Kelly Chan-Yam; Evangelos Marcolefas; Lyle G Whyte
Journal:  Front Microbiol       Date:  2017-12-20       Impact factor: 5.640

3.  Draft Genome Sequence of Uncultured Upland Soil Cluster Gammaproteobacteria Gives Molecular Insights into High-Affinity Methanotrophy.

Authors:  Collin R Edwards; Tullis C Onstott; Jennifer M Miller; Jessica B Wiggins; Wei Wang; Charles K Lee; S Craig Cary; Stephen B Pointing; Maggie C Y Lau
Journal:  Genome Announc       Date:  2017-04-27

4.  Taxonomic and Functional Compositions Impacted by the Quality of Metatranscriptomic Assemblies.

Authors:  Maggie C Y Lau; Rachel L Harris; Youmi Oh; Min Joo Yi; Aida Behmard; Tullis C Onstott
Journal:  Front Microbiol       Date:  2018-06-20       Impact factor: 5.640

5.  Methanotrophy across a natural permafrost thaw environment.

Authors:  Caitlin M Singleton; Carmody K McCalley; Ben J Woodcroft; Joel A Boyd; Paul N Evans; Suzanne B Hodgkins; Jeffrey P Chanton; Steve Frolking; Patrick M Crill; Scott R Saleska; Virginia I Rich; Gene W Tyson
Journal:  ISME J       Date:  2018-06-28       Impact factor: 10.302

6.  Paleo-Rock-Hosted Life on Earth and the Search on Mars: A Review and Strategy for Exploration.

Authors:  T C Onstott; B L Ehlmann; H Sapers; M Coleman; M Ivarsson; J J Marlow; A Neubeck; P Niles
Journal:  Astrobiology       Date:  2019-06-25       Impact factor: 4.335

Review 7.  Microbial ecology of the cryosphere (glacial and permafrost habitats): current knowledge.

Authors:  Rosa Margesin; Tony Collins
Journal:  Appl Microbiol Biotechnol       Date:  2019-02-05       Impact factor: 4.813

8.  Culture-Dependent Bioprospecting of Bacterial Isolates From the Canadian High Arctic Displaying Antibacterial Activity.

Authors:  Evangelos Marcolefas; Tiffany Leung; Mira Okshevsky; Geoffrey McKay; Emma Hignett; Jérémie Hamel; Gabriela Aguirre; Olivia Blenner-Hassett; Brian Boyle; Roger C Lévesque; Dao Nguyen; Samantha Gruenheid; Lyle Whyte
Journal:  Front Microbiol       Date:  2019-08-09       Impact factor: 5.640

9.  Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution.

Authors:  Liang Shen; Yongqin Liu; Michelle A Allen; Baiqing Xu; Ninglian Wang; Timothy J Williams; Feng Wang; Yuguang Zhou; Qing Liu; Ricardo Cavicchioli
Journal:  Microbiome       Date:  2021-06-12       Impact factor: 14.650

10.  Landscape topography structures the soil microbiome in arctic polygonal tundra.

Authors:  Neslihan Taş; Emmanuel Prestat; Shi Wang; Yuxin Wu; Craig Ulrich; Timothy Kneafsey; Susannah G Tringe; Margaret S Torn; Susan S Hubbard; Janet K Jansson
Journal:  Nat Commun       Date:  2018-02-22       Impact factor: 14.919

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