Literature DB >> 25869863

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.

Krzysztof J Gorgolewski1, Gael Varoquaux2, Gabriel Rivera3, Yannick Schwartz2, Vanessa V Sochat4, Satrajit S Ghosh5, Camille Maumet6, Thomas E Nichols7, Jean-Baptiste Poline8, Tal Yarkoni9, Daniel S Margulies10, Russell A Poldrack11.   

Abstract

NeuroVault.org is dedicated to storing outputs of analyses in the form of statistical maps, parcellations and atlases, a unique strategy that contrasts with most neuroimaging repositories that store raw acquisition data or stereotaxic coordinates. Such maps are indispensable for performing meta-analyses, validating novel methodology, and deciding on precise outlines for regions of interest (ROIs). NeuroVault is open to maps derived from both healthy and clinical populations, as well as from various imaging modalities (sMRI, fMRI, EEG, MEG, PET, etc.). The repository uses modern web technologies such as interactive web-based visualization, cognitive decoding, and comparison with other maps to provide researchers with efficient, intuitive tools to improve the understanding of their results. Each dataset and map is assigned a permanent Universal Resource Locator (URL), and all of the data is accessible through a REST Application Programming Interface (API). Additionally, the repository supports the NIDM-Results standard and has the ability to parse outputs from popular FSL and SPM software packages to automatically extract relevant metadata. This ease of use, modern web-integration, and pioneering functionality holds promise to improve the workflow for making inferences about and sharing whole-brain statistical maps.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25869863      PMCID: PMC4806527          DOI: 10.1016/j.neuroimage.2015.04.016

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  16 in total

Review 1.  Sharing heterogeneous data: the national database for autism research.

Authors:  Dan Hall; Michael F Huerta; Matthew J McAuliffe; Gregory K Farber
Journal:  Neuroinformatics       Date:  2012-10

Review 2.  Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies.

Authors:  Gary H Glover; Bryon A Mueller; Jessica A Turner; Theo G M van Erp; Thomas T Liu; Douglas N Greve; James T Voyvodic; Jerod Rasmussen; Gregory G Brown; David B Keator; Vince D Calhoun; Hyo Jong Lee; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; Syam Gadde; Adrian Preda; Kelvin O Lim; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  J Magn Reson Imaging       Date:  2012-02-07       Impact factor: 4.813

Review 3.  Making big data open: data sharing in neuroimaging.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

4.  Dissociable roles of right inferior frontal cortex and anterior insula in inhibitory control: evidence from intrinsic and task-related functional parcellation, connectivity, and response profile analyses across multiple datasets.

Authors:  Weidong Cai; Srikanth Ryali; Tianwen Chen; Chiang-Shan R Li; Vinod Menon
Journal:  J Neurosci       Date:  2014-10-29       Impact factor: 6.167

5.  Lost in localization--but found with foci?!

Authors:  David C Van Essen
Journal:  Neuroimage       Date:  2009-05-27       Impact factor: 6.556

6.  Data sharing in neuroimaging research.

Authors:  Jean-Baptiste Poline; Janis L Breeze; Satrajit Ghosh; Krzysztof Gorgolewski; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Karl G Helmer; David B Keator; Daniel S Marcus; Russell A Poldrack; Yannick Schwartz; John Ashburner; David N Kennedy
Journal:  Front Neuroinform       Date:  2012-04-05       Impact factor: 4.081

7.  Large-scale automated synthesis of human functional neuroimaging data.

Authors:  Tal Yarkoni; Russell A Poldrack; Thomas E Nichols; David C Van Essen; Tor D Wager
Journal:  Nat Methods       Date:  2011-06-26       Impact factor: 28.547

8.  The cognitive atlas: toward a knowledge foundation for cognitive neuroscience.

Authors:  Russell A Poldrack; Aniket Kittur; Donald Kalar; Eric Miller; Christian Seppa; Yolanda Gil; D Stott Parker; Fred W Sabb; Robert M Bilder
Journal:  Front Neuroinform       Date:  2011-09-06       Impact factor: 4.081

9.  Toward open sharing of task-based fMRI data: the OpenfMRI project.

Authors:  Russell A Poldrack; Deanna M Barch; Jason P Mitchell; Tor D Wager; Anthony D Wagner; Joseph T Devlin; Chad Cumba; Oluwasanmi Koyejo; Michael P Milham
Journal:  Front Neuroinform       Date:  2013-07-08       Impact factor: 4.081

10.  NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.

Authors:  Krzysztof J Gorgolewski; Gael Varoquaux; Gabriel Rivera; Yannick Schwarz; Satrajit S Ghosh; Camille Maumet; Vanessa V Sochat; Thomas E Nichols; Russell A Poldrack; Jean-Baptiste Poline; Tal Yarkoni; Daniel S Margulies
Journal:  Front Neuroinform       Date:  2015-04-10       Impact factor: 4.081

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  38 in total

1.  MRI quality control for the Italian Neuroimaging Network Initiative: moving towards big data in multiple sclerosis.

Authors:  Loredana Storelli; Maria A Rocca; Patrizia Pantano; Elisabetta Pagani; Nicola De Stefano; Gioacchino Tedeschi; Paola Zaratin; Massimo Filippi
Journal:  J Neurol       Date:  2019-08-17       Impact factor: 4.849

2.  What Executive Function Network is that? An Image-Based Meta-Analysis of Network Labels.

Authors:  Helene van Ettinger-Veenstra; Suzanne T Witt; Taylor Salo; Michael C Riedel; Angela R Laird
Journal:  Brain Topogr       Date:  2021-05-10       Impact factor: 3.020

3.  Reply to Brown and Behrmann, Cox, et al., and Kessler et al.: Data and code sharing is the way forward for fMRI.

Authors:  Anders Eklund; Thomas E Nichols; Hans Knutsson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

4.  Functional brain segmentation using inter-subject correlation in fMRI.

Authors:  Jukka-Pekka Kauppi; Juha Pajula; Jari Niemi; Riitta Hari; Jussi Tohka
Journal:  Hum Brain Mapp       Date:  2017-03-10       Impact factor: 5.038

5.  An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity.

Authors:  Michael de Ridder; Karsten Klein; Jean Yang; Pengyi Yang; Jim Lagopoulos; Ian Hickie; Max Bennett; Jinman Kim
Journal:  Neuroinformatics       Date:  2019-04

6.  A tail of two sides: Artificially doubled false positive rates in neuroimaging due to the sidedness choice with t-tests.

Authors:  Gang Chen; Robert W Cox; Daniel R Glen; Justin K Rajendra; Richard C Reynolds; Paul A Taylor
Journal:  Hum Brain Mapp       Date:  2018-09-28       Impact factor: 5.038

7.  Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates.

Authors:  Anders Eklund; Thomas E Nichols; Hans Knutsson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

Review 8.  Are the Neural Correlates of Consciousness in the Front or in the Back of the Cerebral Cortex? Clinical and Neuroimaging Evidence.

Authors:  Melanie Boly; Marcello Massimini; Naotsugu Tsuchiya; Bradley R Postle; Christof Koch; Giulio Tononi
Journal:  J Neurosci       Date:  2017-10-04       Impact factor: 6.167

Review 9.  Human brain atlasing: past, present and future.

Authors:  Wieslaw L Nowinski
Journal:  Neuroradiol J       Date:  2017-11-03

10.  Rostro-caudal Architecture of the Frontal Lobes in Humans.

Authors:  Michel Thiebaut de Schotten; Marika Urbanski; Benedicte Batrancourt; Richard Levy; Bruno Dubois; Leonardo Cerliani; Emmanuelle Volle
Journal:  Cereb Cortex       Date:  2017-08-01       Impact factor: 5.357

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