| Literature DB >> 25914639 |
Krzysztof J Gorgolewski1, Gael Varoquaux2, Gabriel Rivera3, Yannick Schwarz2, Satrajit S Ghosh4, Camille Maumet5, Vanessa V Sochat6, Thomas E Nichols7, Russell A Poldrack6, Jean-Baptiste Poline8, Tal Yarkoni9, Daniel S Margulies10.
Abstract
Here we present NeuroVault-a web based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain. NeuroVault is easy to use and employs modern web technologies to provide informative visualization of data without the need to install additional software. In addition, it leverages the power of the Neurosynth database to provide cognitive decoding of deposited maps. The data are exposed through a public REST API enabling other services and tools to take advantage of it. NeuroVault is a new resource for researchers interested in conducting meta- and coactivation analyses.Entities:
Keywords: data sharing; database; meta-analysis; repository; statistical parameter mapping (SPM)
Year: 2015 PMID: 25914639 PMCID: PMC4392315 DOI: 10.3389/fninf.2015.00008
Source DB: PubMed Journal: Front Neuroinform ISSN: 1662-5196 Impact factor: 4.081
Figure 1Schematic overview of the NeuroVault platform. To begin working with NeuroVault, users are asked to create an account or log in using their Facebook or Google account. After login, the user creates a collection (representing a paper or a study). At this stage, users can provide a DOI pointing to a paper associated with the collection and/or fill in a number of fields describing the study (see Supplementary Table 1 for details). This additional information is, however, optional. After the collection is created, users can add images. This can be done one-by-one or in bulk by uploading whole folders. Again, there is an option to add more metadata describing the images. The process of creating a collection and uploading statistical maps to NeuroVault takes only 5–10 min. When the maps are uploaded, users can start benefiting from permanent link to their results, interactive web-based visualization, and real-time image decoding.
Figure 2Visualization options available in NeuroVault. The user can choose to interactively interrogate the images using 2D volumetric view (A), 3D fiducial view (B), 3D inflated view (C), or a flattened cortical surface map (D).
Figure 3Results of the Neurosynth decoding of a statistical map obtained through NeuroVault API. Users are able to interactively compare their maps with Neurosynth topic maps.
Figure 4Comparison of frequency of activation across human brain studies obtained using different methods. Top: Prior activation probability map obtained from coordinate-based meta-analysis using NeuroSynth. Middle: Proportion of maps in NeuroVault exhibiting values of T or Z higher than 3. Bottom: Mean of all T and Z maps (also deposited in NeuroVault). Maps from this figure are available at http://neurovault.org/collections/439/.
Details of the four studies included in the example meta-analysis.
| 42 | 2 | 15 | “Triangulating a Cognitive Control Network Using Diffusion-Weighted Magnetic Resonance Imaging (MRI) and Functional MRI” (Aron et al., |
| 98 | 1 | 24 | “The generality of self-control” |
| 413 | 2 | 8 | “Classification learning and stop-signal (1 year test–retest)”g6 |
| 423 | 3 | 20 | “Common Neural Substrates for Inhibition of Spoken and Manual Responses” (Xue et al., |
Figure 5Comparison of image based and coordinate based meta analysis of response inhibition. Meta analysis based on unthresholded statistical maps obtained from NeuroVault (top row) managed to recover the pattern of activation obtained using traditional methods despite including much fewer studies. NeuroVault map has been thresholded at z = 6, response inhibition map has been thresholded at z = 1.77 (the threshold values were chosen for visualization purposes only, but both are statistically significant at p < 0.05). Unthresholded versions of these maps are available at http://neurovault.org/collections/439/.