Literature DB >> 28420795

Reply to Brown and Behrmann, Cox, et al., and Kessler et al.: Data and code sharing is the way forward for fMRI.

Anders Eklund1,2,3, Thomas E Nichols4,5, Hans Knutsson6,3.   

Abstract

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Year:  2017        PMID： 28420795      PMCID： PMC5410782          DOI： 10.1073/pnas.1620285114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  14 in total

1.  The case for open computer programs.

Authors:  Darrel C Ince; Leslie Hatton; John Graham-Cumming
Journal:  Nature       Date:  2012-02-22       Impact factor: 49.962

2.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

Review 3.  Making big data open: data sharing in neuroimaging.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

4.  Reevaluating "cluster failure" in fMRI using nonparametric control of the false discovery rate.

Authors:  Daniel Kessler; Mike Angstadt; Chandra S Sripada
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

5.  FMRI Clustering in AFNI: False-Positive Rates Redux.

Authors:  Robert W Cox; Gang Chen; Daniel R Glen; Richard C Reynolds; Paul A Taylor
Journal:  Brain Connect       Date:  2017-04

6.  Toward standard practices for sharing computer code and programs in neuroscience.

Authors:  Stephen J Eglen; Ben Marwick; Yaroslav O Halchenko; Michael Hanke; Shoaib Sufi; Padraig Gleeson; R Angus Silver; Andrew P Davison; Linda Lanyon; Mathew Abrams; Thomas Wachtler; David J Willshaw; Christophe Pouzat; Jean-Baptiste Poline
Journal:  Nat Neurosci       Date:  2017-05-25       Impact factor: 24.884

7.  BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Authors:  Krzysztof J Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capotă; M Mallar Chakravarty; Nathan W Churchill; Alexander Li Cohen; R Cameron Craddock; Gabriel A Devenyi; Anders Eklund; Oscar Esteban; Guillaume Flandin; Satrajit S Ghosh; J Swaroop Guntupalli; Mark Jenkinson; Anisha Keshavan; Gregory Kiar; Franziskus Liem; Pradeep Reddy Raamana; David Raffelt; Christopher J Steele; Pierre-Olivier Quirion; Robert E Smith; Stephen C Strother; Gaël Varoquaux; Yida Wang; Tal Yarkoni; Russell A Poldrack
Journal:  PLoS Comput Biol       Date:  2017-03-09       Impact factor: 4.475

8.  NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.

Authors:  Krzysztof J Gorgolewski; Gael Varoquaux; Gabriel Rivera; Yannick Schwartz; Vanessa V Sochat; Satrajit S Ghosh; Camille Maumet; Thomas E Nichols; Jean-Baptiste Poline; Tal Yarkoni; Daniel S Margulies; Russell A Poldrack
Journal:  Neuroimage       Date:  2015-04-11       Impact factor: 6.556

9.  Data sharing in neuroimaging research.

Authors:  Jean-Baptiste Poline; Janis L Breeze; Satrajit Ghosh; Krzysztof Gorgolewski; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Karl G Helmer; David B Keator; Daniel S Marcus; Russell A Poldrack; Yannick Schwartz; John Ashburner; David N Kennedy
Journal:  Front Neuroinform       Date:  2012-04-05       Impact factor: 4.081

10.  Toward open sharing of task-based fMRI data: the OpenfMRI project.

Authors:  Russell A Poldrack; Deanna M Barch; Jason P Mitchell; Tor D Wager; Anthony D Wagner; Joseph T Devlin; Chad Cumba; Oluwasanmi Koyejo; Michael P Milham
Journal:  Front Neuroinform       Date:  2013-07-08       Impact factor: 4.081
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  7 in total

1.  Individual differences in decoding skill, print exposure, and cortical structure in young adults.

Authors:  Clinton L Johns; Andrew A Jahn; Hannah R Jones; Dave Kush; Peter J Molfese; Julie A Van Dyke; James S Magnuson; Whitney Tabor; W Einar Mencl; Donald P Shankweiler; David Braze
Journal:  Lang Cogn Neurosci       Date:  2018-05-22       Impact factor: 2.331

2.  Controversy in statistical analysis of functional magnetic resonance imaging data.

Authors:  Emery N Brown; Marlene Behrmann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

3.  Discrete Modules and Mesoscale Functional Circuits for Thermal Nociception within Primate S1 Cortex.

Authors:  Pai-Feng Yang; Ruiqi Wu; Tung-Lin Wu; Zhaoyue Shi; Li Min Chen
Journal:  J Neurosci       Date:  2018-01-15       Impact factor: 6.167

4.  Insula Sensitivity to Unfairness in Alcohol Use Disorder.

Authors:  Carlos R Cortes; Erica N Grodin; Claire L Mann; Karan Mathur; Michael Kerich; Xi Zhu; Melanie Schwandt; Nancy Diazgranados; David T George; Reza Momenan; Markus Heilig
Journal:  Alcohol Alcohol       Date:  2018-05-01       Impact factor: 2.826

5.  Replication of Resting State-Task Network Correspondence and Novel Findings on Brain Network Activation During Task fMRI in the Human Connectome Project Study.

Authors:  Lisa D Nickerson
Journal:  Sci Rep       Date:  2018-12-03       Impact factor: 4.379

6.  Cluster failure revisited: Impact of first level design and physiological noise on cluster false positive rates.

Authors:  Anders Eklund; Hans Knutsson; Thomas E Nichols
Journal:  Hum Brain Mapp       Date:  2018-10-15       Impact factor: 5.038

7.  Evaluation of Six Phase Encoding Based Susceptibility Distortion Correction Methods for Diffusion MRI.

Authors:  Xuan Gu; Anders Eklund
Journal:  Front Neuroinform       Date:  2019-12-05       Impact factor: 4.081
  7 in total

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