Literature DB >> 25869161

Increasing amplification success of forensic DNA samples using multiple displacement amplification.

Kaye N Ballantyne1, Roland A H van Oorschot, R John Mitchell.   

Abstract

Multiple displacement amplification (MDA) is capable of amplifying nanogram template amounts of DNA with high accuracy to generate micrograms of representative product. Although MDA is able to amplify small template amounts (<100 pg), increased levels of preferential amplification and allelic dropout are observed. The use of molecular crowders (polyethylene glycol 400) can decrease the amplification bias and increase amplification success. We describe the use of standard and crowded MDA on low-concentration casework samples originating from blood, semen, saliva, hair, and trace DNA. While standard MDA produced no significant increases in STR genotyping success, the use of crowded MDA yielded an average increase of 15% in the number of alleles, with a significant decrease in the amplification bias, resulting in clearer, more-complete profiles from forensically relevant samples.

Entities:  

Year:  2007        PMID: 25869161     DOI: 10.1007/s12024-007-0017-2

Source DB:  PubMed          Journal:  Forensic Sci Med Pathol        ISSN: 1547-769X            Impact factor:   2.007


  21 in total

1.  Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

Authors:  J Guillermo Paez; Ming Lin; Rameen Beroukhim; Jeffrey C Lee; Xiaojun Zhao; Daniel J Richter; Stacey Gabriel; Paula Herman; Hidefumi Sasaki; David Altshuler; Cheng Li; Matthew Meyerson; William R Sellers
Journal:  Nucleic Acids Res       Date:  2004-05-18       Impact factor: 16.971

2.  Whole genome amplification strategy for forensic genetic analysis using single or few cell equivalents of genomic DNA.

Authors:  Erin K Hanson; Jack Ballantyne
Journal:  Anal Biochem       Date:  2005-09-15       Impact factor: 3.365

3.  Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer.

Authors:  H Telenius; N P Carter; C E Bebb; M Nordenskjöld; B A Ponder; A Tunnacliffe
Journal:  Genomics       Date:  1992-07       Impact factor: 5.736

4.  Whole genome amplification from a single cell: implications for genetic analysis.

Authors:  L Zhang; X Cui; K Schmitt; R Hubert; W Navidi; N Arnheim
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

5.  Molecular crowding increases the amplification success of multiple displacement amplification and short tandem repeat genotyping.

Authors:  Kaye N Ballantyne; Roland A H van Oorschot; R John Mitchell; Irene Koukoulas
Journal:  Anal Biochem       Date:  2006-05-11       Impact factor: 3.365

6.  A multiple-tubes approach for accurate genotyping of very small DNA samples by using PCR: statistical considerations.

Authors:  W Navidi; N Arnheim; M S Waterman
Journal:  Am J Hum Genet       Date:  1992-02       Impact factor: 11.025

7.  Alu polymerase chain reaction: a method for rapid isolation of human-specific sequences from complex DNA sources.

Authors:  D L Nelson; S A Ledbetter; L Corbo; M F Victoria; R Ramírez-Solis; T D Webster; D H Ledbetter; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

8.  Assessment of multiple displacement amplification for polymorphism discovery and haplotype determination at a highly polymorphic locus, MC1R.

Authors:  Kenton K Murthy; Vafa S Mahboubi; Alicia Santiago; Mandy T Barragan; Ralph Knöll; Heinz-Peter Schultheiss; Daniel T O'Connor; Nicholas J Schork; Brinda K Rana
Journal:  Hum Mutat       Date:  2005-08       Impact factor: 4.878

9.  Multiple mutation analyses in single tumor cells with improved whole genome amplification.

Authors:  W Dietmaier; A Hartmann; S Wallinger; E Heinmöller; T Kerner; E Endl; K W Jauch; F Hofstädter; J Rüschoff
Journal:  Am J Pathol       Date:  1999-01       Impact factor: 4.307

10.  Genome amplification of single sperm using multiple displacement amplification.

Authors:  Zhengwen Jiang; Xingqi Zhang; Ranjan Deka; Li Jin
Journal:  Nucleic Acids Res       Date:  2005-06-07       Impact factor: 16.971

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  1 in total

1.  Investigative strategy for the forensic detection of sperm traces.

Authors:  Heidrun Evers; Frank Heidorn; Christin Gruber; Gabriele Lasczkowski; Manfred Risse; Reinhard Dettmeyer; Marcel A Verhoff
Journal:  Forensic Sci Med Pathol       Date:  2009-06-11       Impact factor: 2.007

  1 in total

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