Literature DB >> 28266853

Potential Artifacts in Sample Preparation Methods Used for Imaging Amyloid Oligomers and Protofibrils due to Surface-Mediated Fibril Formation.

Yi-Chih Lin1, Milton H Repollet-Pedrosa2, John J Ferrie1, E James Petersson1, Zahra Fakhraai1.   

Abstract

Accurate imaging of nanometer-sized structures and morphologies is essential to characterizing amyloid species formed at various stages of amyloid aggregation. In this article, we examine the effect of different drying procedures on the final morphology of surface-mediated fibrils formed during the incubation period, which may then be mistaken as oligomers or protofibrils intentionally formed in solution for a particular study. Atomic force microscopy results show that some artifacts, such as globules, flakelike structures, and even micrometer-long fibrils, can be produced under various drying conditions. We also demonstrate that one can prevent drying artifacts by using an appropriate spin-coating procedure to dry amyloid samples. This procedure can bypass the wetting/dewetting transition of the liquid layer during the drying process and preserve the structure of interest on the substrate without generating drying artifacts.

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Year:  2017        PMID: 28266853      PMCID: PMC5520986          DOI: 10.1021/acs.jpcb.6b12560

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  24 in total

Review 1.  Techniques to study amyloid fibril formation in vitro.

Authors:  Melanie R Nilsson
Journal:  Methods       Date:  2004-09       Impact factor: 3.608

2.  Inhibition of amyloid peptide fibrillation by inorganic nanoparticles: functional similarities with proteins.

Authors:  Seong Il Yoo; Ming Yang; Jeffrey R Brender; Vivekanandan Subramanian; Kai Sun; Nam Eok Joo; Soo-Hwan Jeong; Ayyalusamy Ramamoorthy; Nicholas A Kotov
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-14       Impact factor: 15.336

3.  Review: recent advances and current challenges in scanning probe microscopy of biomolecular surfaces and interfaces.

Authors:  Annette F Raigoza; Jason W Dugger; Lauren J Webb
Journal:  ACS Appl Mater Interfaces       Date:  2013-07-31       Impact factor: 9.229

Review 4.  The amyloid beta peptide: a chemist's perspective. Role in Alzheimer's and fibrillization.

Authors:  I W Hamley
Journal:  Chem Rev       Date:  2012-07-19       Impact factor: 60.622

5.  High-speed atomic force microscopy reveals structural dynamics of amyloid β1-42 aggregates.

Authors:  Takahiro Watanabe-Nakayama; Kenjiro Ono; Masahiro Itami; Ryoichi Takahashi; David B Teplow; Masahito Yamada
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

6.  Chirality-assisted ring-like aggregation of aβ(1-40) at liquid-solid interfaces: a stereoselective two-step assembly process.

Authors:  Guanbin Gao; Mingxi Zhang; Pei Lu; Guanlun Guo; Dong Wang; Taolei Sun
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-22       Impact factor: 15.336

7.  Specific domains of Aβ facilitate aggregation on and association with lipid bilayers.

Authors:  Elizabeth A Yates; Sherry L Owens; Michael F Lynch; Elena M Cucco; C Samuel Umbaugh; Justin Legleiter
Journal:  J Mol Biol       Date:  2013-03-21       Impact factor: 5.469

8.  Protein nanopatterning on self-organized poly(styrene-b-isoprene) thin film templates.

Authors:  Dan Liu; Tao Wang; Joseph L Keddie
Journal:  Langmuir       Date:  2009-04-21       Impact factor: 3.882

9.  Structure-neurotoxicity relationships of amyloid beta-protein oligomers.

Authors:  Kenjiro Ono; Margaret M Condron; David B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

Review 10.  The amyloid state and its association with protein misfolding diseases.

Authors:  Tuomas P J Knowles; Michele Vendruscolo; Christopher M Dobson
Journal:  Nat Rev Mol Cell Biol       Date:  2014-06       Impact factor: 94.444

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  3 in total

1.  Possible Existence of α-Sheets in the Amyloid Fibrils Formed by a TTR105-115 Mutant.

Authors:  Mary Rose Hilaire; Bei Ding; Debopreeti Mukherjee; Jianxin Chen; Feng Gai
Journal:  J Am Chem Soc       Date:  2018-01-04       Impact factor: 15.419

2.  Microfluidic deposition for resolving single-molecule protein architecture and heterogeneity.

Authors:  Francesco Simone Ruggeri; Jerome Charmet; Tadas Kartanas; Quentin Peter; Sean Chia; Johnny Habchi; Christopher M Dobson; Michele Vendruscolo; Tuomas P J Knowles
Journal:  Nat Commun       Date:  2018-09-24       Impact factor: 14.919

3.  Surface-Directed Structural Transition of Amyloidogenic Aggregates and the Resulting Neurotoxicity.

Authors:  Hao Chen; Dan Sun; Yin Tian; Haiming Fan; Yonggang Liu; Ludmilla A Morozova-Roche; Ce Zhang
Journal:  ACS Omega       Date:  2020-02-06
  3 in total

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